BAC Information

Click to search

BAC

Clone NameB6Ng01-105G22
Chromosome1 (Build37)
Map Location 196,837,875 - 196,838,676
singlet/doubletsinglet
Overlap genenone
Upstream geneEG623172, Plxna2, Cd34
Downstream geneCd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105G22.g
ACCDH913457
length794
definitionDH913457|Mus musculus domesticus DNA, BAC clone: B6Ng01-105G22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaaatccttccgttgttgcccatataaactaagactcattttct
tcctgtgcctttctttttccttctttccttagcttatgatgcttttcata
gtttgtttctgctcttcctattttccttttcagattatgtctgtccatgt
gtagcttactacacacaattgattcttaaatttgtgtttgcttaagcctt
ataatagttacccctactgcaagaattggcacacttttctcccacctttc
tccttctctctctctctctctctctctctctctctctctctctctctctc
aagtgctggcgattgaacacaagggtttacatatactagacaagcactct
gccactggtctaaattcaaagcctcctcccactcccctttggacataaca
cttcgcagcataggtaggcatcaaacttacaatccacttgcctctacctt
ccaagttattaattatatgtttgtgctatcatgctggctctattttattt
ttgactaaaggaatggaatagaaagcctaaagatacatacatgttgaaac
ccctgctttataacaaagagatttacgtactgattagaaacaggaatagg
tagatatttgataaaacaaacaaacacaccactgctaatggaaataataa
tccaggccatataaaaataatgatccaacaatgatacaaggtgaatgtta
aacaaaacttcatgtaccagctaatagtatctaccaggatctagagccac
actgctgttcctaagatggcaagaaaccccttaccatagagaaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_196837875_196838676
seq2: B6Ng01-105G22.g_68_861

seq1  GAATTCTAAATCCTTCCGTTGTTGCCCATATAAACTAAGACTCATTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATCCTTCCGTTGTTGCCCATATAAACTAAGACTCATTTTCT  50

seq1  TCCTGTGCCTTTCTTTTTCCTTCTTTCCTTAGCTTATGATGCTTTTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGCCTTTCTTTTTCCTTCTTTCCTTAGCTTATGATGCTTTTCATA  100

seq1  GTTTGTTTCTGCTCTTCCTATTTTCCTTTTCAGATTATGTCTGTCCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTCTGCTCTTCCTATTTTCCTTTTCAGATTATGTCTGTCCATGT  150

seq1  GTAGCTTACTACACACAATTGATTCTTAAATTTGTGTTTGCTTAAGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTACTACACACAATTGATTCTTAAATTTGTGTTTGCTTAAGCCTT  200

seq1  ATAATAGTTACCCCTACTGCAAGAATTGGCACACTTTTCTCCCACCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGTTACCCCTACTGCAAGAATTGGCACACTTTTCTCCCACCTTTC  250

seq1  TCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  300

seq1  AAGTGCTGGCGATTGAACACAAGGCTTTACATATACTAGACAAGCACTCT  350
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAGTGCTGGCGATTGAACACAAGGGTTTACATATACTAGACAAGCACTCT  350

seq1  GCCACTGGTCTAAATTCAAAGCCTCCTCCCACTCCCCTTTGCACATAACA  400
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCCACTGGTCTAAATTCAAAGCCTCCTCCCACTCCCCTTTGGACATAACA  400

seq1  CTTCGTAGCATAGGTAGGCATCAAACTTACAATCCACTTGCCTCTACCTT  450
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGCAGCATAGGTAGGCATCAAACTTACAATCCACTTGCCTCTACCTT  450

seq1  CCAAGTTATGAATTATAGGTTTGTGCTATCATGCTGGCTCTATTTTATTT  500
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  CCAAGTTATTAATTATATGTTTGTGCTATCATGCTGGCTCTATTTTATTT  500

seq1  TTGACTAAAGGAATGGAATAGAAAGCCTAGTAGATACATACATGTTGAAA  550
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  TTGACTAAAGGAATGGAATAGAAAGCCTA-AAGATACATACATGTTGAAA  549

seq1  CCCCTGCTTTATGACAAAGAGATTTACGTACTGATTAGAAACAGGGAATA  600
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  CCCCTGCTTTATAACAAAGAGATTTACGTACTGATTAGAAACA-GGAATA  598

seq1  GGTAGATATTTTGATAAAACAAACAAACACACCACTGCTAGTGGAAATAA  650
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  GGTAGATA-TTTGATAAAACAAACAAACACACCACTGCTAATGGAAATAA  647

seq1  TTAATCTAGGCCATATAAAAATAATGATCCAACAATGATATAAATGTGAA  700
       ||||| |||||||||||||||||||||||||||||||||  || |||||
seq2  -TAATCCAGGCCATATAAAAATAATGATCCAACAATGATA-CAAGGTGAA  695

seq1  TGTTAAAACAAAACTTCATGTACAAGCTAATAGTATCT-TCATGATCTTG  749
      |||| |||||||||||||||||| ||||||||||||||  || ||||| |
seq2  TGTT-AAACAAAACTTCATGTACCAGCTAATAGTATCTACCAGGATCTAG  744

seq1  AGCTAGACATGCAGTTCCTAAAGATGGCAAAGAAATCCCTTACCATAAAG  799
      ||| | || ||| |||||| |||||||| |||||| ||||||||||| ||
seq2  AGCCACAC-TGCTGTTCCT-AAGATGGC-AAGAAACCCCTTACCATAGAG  791

seq1  AAA  802
      |||
seq2  AAA  794