BAC Information

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BAC

Clone NameB6Ng01-105I12
Chromosome1 (Build37)
Map Location 174,637,277 - 174,798,778
singlet/doubletdoublet
Overlap geneLOC665875
Upstream geneLOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp
Downstream geneApcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105I12.bB6Ng01-105I12.g
ACCDH913530DH913531
length1,126276
definitionDH913530|Mus musculus domesticus DNA, BAC clone: B6Ng01-105I12, 5' end.DH913531|Mus musculus domesticus DNA, BAC clone: B6Ng01-105I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,797,654 - 174,798,778)(174,637,277 - 174,637,552)
sequence
gaattcctccccttaccattaaggcatcttgtcctgtgagctcataaccc
gtaagctcataacctgttgaaccagcgtgttacttagggttttccagaga
aatagaaccaatggagtatgtataattataacaagagatttattagtttg
gttcacatagtctgcggctgaataatcccataatggccatctgtaggcta
gggaaagaaaaatctgtagctgcttggtccaagaatttgaaaacctcaga
atgaggaataggacaatgatataggacaggtcaggcccaaagaccacaga
acctcttgcacagcatcgagaaatacacacataggaaggaaaagcaagag
agagacaaaaagaaaacaggttttgtgctttctgctttttgtttatagct
cagctctaaacctgcctcctggtgctgcccacatctgcatgtgcatcccc
tccccccaaagctcattgacatgacagtcttacagacacactgtgatggc
tggtctcaatgtcagcttggcacctgaactagagttatctgaaaggacgg
caatgttgtgcaccctaactcctgccccatggacagctgttcggtgtccc
caaagttctgtatgagaaaacatgcttctagtctcctttctgttgctgtg
ataaaacaccctgaccaaaagcaagtgcaggaaggaaaagtgttatttga
attttgcaattccaggttgctgtcccctgttgtagcagaagtcagagggg
cagcagattgagacatctggtggacatcacaaccacatgcaagagcagag
aaaaatcagtgcactgtactgcctgcctgcttgctctcatatagttttct
actgtgcttatacagtcaaaggcccagacaatgcaattagcactgctcaa
aatccaggtcttcccaattaccaatatagacaattcccctacaaccagac
cttatataacccccacattataactccctttccagatgattctaggccat
attatctagacattgaacaaacagccgcattgcttagagcattatctctt
ggggttgggttcctcgttctatcctggtctacttggattcccctactggt
aaacctctgtttcggggaaacactgc
tcccaattgggtgtctagctcaggggttgcagagttctgggtgggcagga
agcccatggtaaaggggagctgaagaaggcatactcacaggggcagagat
aattaccatctgggctagaagccagggatacagcagtcctggtagggtct
ttaatgagaatcagagtttggtgggagacattggagacatgagtatgtgg
ggttttctagcttcatgtctgttgctgccataaagcatcctgactaaata
gcaacttagtcgggggggggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174797654_174798778
seq2: B6Ng01-105I12.b_41_1166 (reverse)

seq1  GCAGTGTT--CCCGGAACAGA-GATTAACAGTGGGGGAATCAGAGATGAC  47
      ||||||||  |||| |||||| | ||| |||| ||||||||  ||  |||
seq2  GCAGTGTTTCCCCGAAACAGAGGTTTACCAGTAGGGGAATCCAAGTAGAC  50

seq1  CCAAGGATAGAACGAGGAACCAAACCCCAAGGAGATAATGCTCTAAAGCA  97
      |  |||||||||||||||||| |||||||| ||||||||||||| |||||
seq2  C--AGGATAGAACGAGGAACCCAACCCCAA-GAGATAATGCTCT-AAGCA  96

seq1  GTGCGCATGTTTGTTTCAAATGTCTAGATAATATGGCCTAGAATCATCTG  147
       ||||  ||||||||   ||||||||||||||||||||||||||||||||
seq2  ATGCGGCTGTTTGTT--CAATGTCTAGATAATATGGCCTAGAATCATCTG  144

seq1  GGAAGGGAGTTATAATGT-GGGGTTATAT-AGGTCTGGTTGTAGGGGAAT  195
      | |||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  GAAAGGGAGTTATAATGTGGGGGTTATATAAGGTCTGGTTGTAGGGGAAT  194

seq1  TGTCTATATTGGTAATTGGGAAGACCCTGGA-TTTGAGCAGTGCT-ATTG  243
      |||||||||||||||||||||||| |||||| ||||||||||||| ||||
seq2  TGTCTATATTGGTAATTGGGAAGA-CCTGGATTTTGAGCAGTGCTAATTG  243

seq1  CATTGTCTGGGCCTTTGACTGTATAAGCACAGTAGAAAACTATATGAGAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTGGGCCTTTGACTGTATAAGCACAGTAGAAAACTATATGAGAG  293

seq1  CAAGCAGGCAGGCAGTACAGTTGCACTGATTTTTCTCTGCTCTTGCATGT  343
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAAGCAGGCAGGCAGTACAG-TGCACTGATTTTTCTCTGCTCTTGCATGT  342

seq1  GGTTGTGATGTCCACCAGATGTCTCAATCTGCTGCCCCTCTGACTTCTGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGATGTCCACCAGATGTCTCAATCTGCTGCCCCTCTGACTTCTGC  392

seq1  TACAACAGGGGACAGCAACCTGGAATTGC-AAATTC-AATAACACTTTTC  441
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  TACAACAGGGGACAGCAACCTGGAATTGCAAAATTCAAATAACACTTTTC  442

seq1  CTTCCTGCACTTGCTTTTGGTCAGGGTGTTTTATCACAGCAACAGAAAGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCACTTGCTTTTGGTCAGGGTGTTTTATCACAGCAACAGAAAGG  492

seq1  AGACTAGAAGCATGTTTTCTCATACAGAACTTTGGGGACACCGAACAGCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGAAGCATGTTTTCTCATACAGAACTTTGGGGACACCGAACAGCT  542

seq1  GTCCATGGGGCAGGAGTTAGGGTGCACAACATTGCCGTCCTTTCAGATAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGGGGCAGGAGTTAGGGTGCACAACATTGCCGTCCTTTCAGATAA  592

seq1  CTCTAGTTCAGGTGCCAAGCTGACATTGAGACCAGCCATCACAGTGTGTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTTCAGGTGCCAAGCTGACATTGAGACCAGCCATCACAGTGTGTC  642

seq1  TGTAAGACTGTCATGTCAATGAGCTTTGGGGGGAGGGGATGCACATGCAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGACTGTCATGTCAATGAGCTTTGGGGGGAGGGGATGCACATGCAG  692

seq1  ATGTGGGCAGCACCAGGAGGCAGGTTTAGAGCTGAGCTATAAACAAAAAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGCAGCACCAGGAGGCAGGTTTAGAGCTGAGCTATAAACAAAAAG  742

seq1  CAGAAAGCACAAAACCTGTTTTCTTTTTGTCTCTCTCTTGCTTTTCCTTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCACAAAACCTGTTTTCTTTTTGTCTCTCTCTTGCTTTTCCTTC  792

seq1  CTATGTGTGTATTTCTCGATGCTGTGCAAGAGGTTCTGTGGTCTTTGGGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGTGTATTTCTCGATGCTGTGCAAGAGGTTCTGTGGTCTTTGGGC  842

seq1  CTGACCTGTCCTATATCATTGTCCTATTCCTCATTCTGAGGTTTTCAAAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTGTCCTATATCATTGTCCTATTCCTCATTCTGAGGTTTTCAAAT  892

seq1  TCTTGGACCAAGCAGCTACAGATTTTTCTTTCCCTAGCCTACAGATGGCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGACCAAGCAGCTACAGATTTTTCTTTCCCTAGCCTACAGATGGCC  942

seq1  ATTATGGGATTATTCAGCCGCAGACTATGTGAACCAAACTAATAAATCTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGGATTATTCAGCCGCAGACTATGTGAACCAAACTAATAAATCTC  992

seq1  TTGTTATAATTATACATACTCCATTGGTTCTATTTCTCTGGAAAACCCTA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATAATTATACATACTCCATTGGTTCTATTTCTCTGGAAAACCCTA  1042

seq1  AGTAACACGCTGGTTCAACAGGTTATGAGCTTACGGGTTATGAGCTCACA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACACGCTGGTTCAACAGGTTATGAGCTTACGGGTTATGAGCTCACA  1092

seq1  GGACAAGATGCCTTAATGGTAAGGGGAGGAATTC  1125
      ||||||||||||||||||||||||||||||||||
seq2  GGACAAGATGCCTTAATGGTAAGGGGAGGAATTC  1126

seq1: chr1_174637277_174637552
seq2: B6Ng01-105I12.g_76_351

seq1  TCCCAATTGGGTGTCTAGCTCAGGGGTTGCAGAGTTCTGGGTGGGCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATTGGGTGTCTAGCTCAGGGGTTGCAGAGTTCTGGGTGGGCAGGA  50

seq1  AGCCCATGGTAAAGGGGAGCTGAAGAAGGCATACTCACAGGGGCAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGGTAAAGGGGAGCTGAAGAAGGCATACTCACAGGGGCAGAGAT  100

seq1  AATTACCATCTGGGCTAGAAGCCAGGGATACAGCAGTCCTGGTAGGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCATCTGGGCTAGAAGCCAGGGATACAGCAGTCCTGGTAGGGTCT  150

seq1  TTAATGAGAATCAGAGTTTGGTGGGAGACATTGGAGACATGAGTATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAGAATCAGAGTTTGGTGGGAGACATTGGAGACATGAGTATGTGG  200

seq1  GGTTTTCTAGCTTCATGTCTGTTGCTGCCATAAAGCATCCTGACTAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTAGCTTCATGTCTGTTGCTGCCATAAAGCATCCTGACTAAATA  250

seq1  GCAACTTAGTCGGGGGGGGGGGGGGA  276
      ||||||||||||||||||||||||||
seq2  GCAACTTAGTCGGGGGGGGGGGGGGA  276