BAC Information

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BAC

Clone NameB6Ng01-105K16
Chromosome1 (Build37)
Map Location 169,153,023 - 169,318,317
singlet/doubletdoublet
Overlap geneUck2, LOC100039844, Tmco1, Aldh9a1, Mgst3
Upstream geneMael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik
Downstream geneLrrc52, Rxrg, Lmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105K16.bB6Ng01-105K16.g
ACCDH913624DH913625
length1,080863
definitionDH913624|Mus musculus domesticus DNA, BAC clone: B6Ng01-105K16, 5' end.DH913625|Mus musculus domesticus DNA, BAC clone: B6Ng01-105K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,317,226 - 169,318,317)(169,153,023 - 169,153,885)
sequence
gaattctgctggcagatcttcctgggaatatcactattctggcactcgag
tttccatcagccctgtccctgatttccttccatgacctccagccttacct
cactggggcaaaatcccatcaggaatccctgaaaggcccattcctttgtg
gaaacatccaaaggctgattcaaagctggagagctgttagtggaagctgt
aagtgagtaaaccaagcctccagccccacccgagtttgctaagccatctt
gtatgtgggactttaagaggcatccattctatctgaccaagccaaccctt
taaatgaccatccctgtgtcaccatcattaaatcgttggggttggactga
tagcacagccaaccaagtaagggttgctatgagattttgggggaatggtg
gctttgctgggctaaggatacttagtcatggtcaccttcctgtttgtatt
aacataaaacaccagctaaaaatttgcagaagagcaacatcacaaactga
agtagaagttgctttttgtccaacctgaggttttgtttacttaaagtcaa
agagaaatctgtcatttaggaaaccctaaggttttgtgtaacttggtgac
tcaggagtgataaattctttgggatggtgcccacatccataactcctgcc
ttttgctttacttatgcaatgctgattgtgccctggggcatttcactagg
cagccaagaggacttgggtacacagtgaaagagtaggcttgcccagaacc
cttccctgtaactgaaagaactatgccccagtgagataggccagcagtgg
cggaagcaggaaacagacagggtcgatccaactggagtactagaatagtg
atcttcccaggagaagctgtcagcagaattcctaaaaggagagcacctga
gccaaagagcctaagagcccatgctgctgcctcataccctggaacagagt
gaatcctgaagctaaccacacacatcattttagcctagattaaggttctt
agcctgagggtatggaggatgtctgggacgaatctaagcctgctgggtct
gctatacttactattcgtatagccatgtta
gaattcattgtttttatttgtctttatttacagccaagtacatagggtgt
ggtcatttcatagcacgaacaaaggcagggcagtaaaaagcaaagacggg
aagaggcagcatcttccagggaaagaacagcctaggtctctagccaccca
accttgctctggaggcagggctgggtaggaactcactgcccgagagaaac
aggactccgctgctgaaactcggtcacctgtggctggcaccgtgagaaca
cagcaggaccagagccagaatcttaaaagggacttgtatacactactaga
tgcatccaattgtgcctttccaacctgccctcttccttgtcctgacacaa
agagcatacagcaatggcccagaggaaaatatgaacggcaaaggagacag
agaaggccagctggtccttcgaagaaagcaagggcctgcatgtaccaggg
gctgaccccagcctcaggaaatcagccctttctttggactcttggacatg
aacaacacaggttccaagggcagtgaaaaacatttccctgccagagactg
cattcctctgcagcagtgggggctttgaggccaaggttgatccggtctcc
acttttgactactcaggggcactgacccagcggcctcccaagagactcac
cctggagagagcgagctggagccaacttcccccacggtctgagtagtcac
cgctaagtgttcgttcggagacaggtgacttggccactgccctagcccca
aggcatgaacctgcttcactcccttccccaggcctactctacccaagcta
gatcagatgcctatctttttcagcctcgggttatccaaagagagtcaggg
ggggcgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_169317226_169318317
seq2: B6Ng01-105K16.b_44_1123 (reverse)

seq1  TAACAATGGCTATACAGTATAGTAAGTTAAGCAGACACCAGCAGGCTATA  50
      |||| |||||||||| | |||||||||  ||||||| |||||||||| ||
seq2  TAAC-ATGGCTATAC-GAATAGTAAGTATAGCAGAC-CCAGCAGGCT-TA  46

seq1  GATCTGTCACAGACATCATCCATACCCTCAGGCTAAGAACCTTAAATCTA  100
      |||  ||| |||||||| ||||||||||||||||||||||||| ||||||
seq2  GATTCGTCCCAGACATCCTCCATACCCTCAGGCTAAGAACCTT-AATCTA  95

seq1  GGCTTAAAATGTGGTGGTGTTGGTTTTGCCTCCAGGATTCACTCTGTTCC  150
      ||| |||||||  || |||| |   ||  || ||||||||||||||||||
seq2  GGC-TAAAATGATGT-GTGTGG---TTAGCTTCAGGATTCACTCTGTTCC  140

seq1  AGGGTATGAGGCAGCAGCATGGGGCTCTTAGGCTCTTTGGCTCAGGTGCT  200
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGGTATGAGGCAGCAGCAT-GGGCTCTTAGGCTCTTTGGCTCAGGTGCT  189

seq1  CTCCTTTTAGGAATTCTGCTGACAGCTTCTCCTGGGAAGATCACTATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTAGGAATTCTGCTGACAGCTTCTCCTGGGAAGATCACTATTCT  239

seq1  AGTACTCCAGTTTGGATCGACCCTGTCTGTTTCCTGCTTCCGCCACTGCT  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTACTCCAG-TTGGATCGACCCTGTCTGTTTCCTGCTTCCGCCACTGCT  288

seq1  GGCCTATCTCACTGGGGCATAGTTCTTTCAGTTACAGGGAAGGGTTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTATCTCACTGGGGCATAGTTCTTTCAGTTACAGGGAAGGGTTCTGG  338

seq1  GCAAGCCTACTCTTTCACTGTGTACCCAAGTCCTCTTGGCTGCCTAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCTACTCTTTCACTGTGTACCCAAGTCCTCTTGGCTGCCTAGTGA  388

seq1  AATGCCCCAGGGCACAATCAGCATTGCATAAGTAAAGCAAAAGGCAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCCAGGGCACAATCAGCATTGCATAAGTAAAGCAAAAGGCAGGAG  438

seq1  TTATGGATGTGGGCACCATCCCAAAGAATTTATCACTCCTGAGTCACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGATGTGGGCACCATCCCAAAGAATTTATCACTCCTGAGTCACCAA  488

seq1  GTTACACAAAACCTTAGGGTTTCCTAAATGACAGATTTCTCTTTGACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACAAAACCTTAGGGTTTCCTAAATGACAGATTTCTCTTTGACTTT  538

seq1  AAGTAAACAAAACCTCAGGTTGGACAAAAAGCAACTTCTACTTCAGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAACAAAACCTCAGGTTGGACAAAAAGCAACTTCTACTTCAGTTTG  588

seq1  TGATGTTGCTCTTCTGCAAATTTTTAGCTGGTGTTTTATGTTAATACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGCTCTTCTGCAAATTTTTAGCTGGTGTTTTATGTTAATACAAA  638

seq1  CAGGAAGGTGACCATGACTAAGTATCCTTAGCCCAGCAAAGCCACCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGTGACCATGACTAAGTATCCTTAGCCCAGCAAAGCCACCATTC  688

seq1  CCCCAAAATCTCATAGCAACCCTTACTTGGTTGGCTGTGCTATCAGTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAATCTCATAGCAACCCTTACTTGGTTGGCTGTGCTATCAGTCCA  738

seq1  ACCCCAACGATTTAATGATGGTGACACAGGGATGGTCATTTAAAGGGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAACGATTTAATGATGGTGACACAGGGATGGTCATTTAAAGGGTTG  788

seq1  GCTTGGTCAGATAGAATGGATGCCTCTTAAAGTCCCACATACAAGATGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTCAGATAGAATGGATGCCTCTTAAAGTCCCACATACAAGATGGC  838

seq1  TTAGCAAACTCGGGTGGGGCTGGAGGCTTGGTTTACTCACTTACAGCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAACTCGGGTGGGGCTGGAGGCTTGGTTTACTCACTTACAGCTTC  888

seq1  CACTAACAGCTCTCCAGCTTTGAATCAGCCTTTGGATGTTTCCACAAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACAGCTCTCCAGCTTTGAATCAGCCTTTGGATGTTTCCACAAAGG  938

seq1  AATGGGCCTTTCAGGGATTCCTGATGGGATTTTGCCCCAGTGAGGTAAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCCTTTCAGGGATTCCTGATGGGATTTTGCCCCAGTGAGGTAAGG  988

seq1  CTGGAGGTCATGGAAGGAAATCAGGGACAGGGCTGATGGAAACTCGAGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTCATGGAAGGAAATCAGGGACAGGGCTGATGGAAACTCGAGTG  1038

seq1  CCAGAATAGTGATATTCCCAGGAAGATCTGCCAGCAGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATAGTGATATTCCCAGGAAGATCTGCCAGCAGAATTC  1080

seq1: chr1_169153023_169153885
seq2: B6Ng01-105K16.g_69_931

seq1  GAATTCATTGTTTTTATTTGTCTTTATTTACAGCCAAGTACATAGGGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTTTATTTGTCTTTATTTACAGCCAAGTACATAGGGTGT  50

seq1  GGTCATTTCATAGCACGAACAAAGGCAGGGCAGTAAAAAGCAAAGACGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTTCATAGCACGAACAAAGGCAGGGCAGTAAAAAGCAAAGACGGG  100

seq1  AAGAGGCAGCATCTTCCAGGGAAAGAACAGCCTAGGTCTCTAGCCACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCAGCATCTTCCAGGGAAAGAACAGCCTAGGTCTCTAGCCACCCA  150

seq1  ACCTTGCTCTGGAGGCAGGGCTGGGTAGGAACTCACTGCCCGAGAGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCTCTGGAGGCAGGGCTGGGTAGGAACTCACTGCCCGAGAGAAAC  200

seq1  AGGACTCCGCTGCTGAAACTCGGTCACCTGTGGCTGGCACCGTGAGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCCGCTGCTGAAACTCGGTCACCTGTGGCTGGCACCGTGAGAACA  250

seq1  CAGCAGGACCAGAGCCAGAATCTTAAAAGGGACTTGTATACACTACTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGACCAGAGCCAGAATCTTAAAAGGGACTTGTATACACTACTAGA  300

seq1  TGCATCCAATTGTGCCTTTCCAACCTGCCCTCTTCCTTGTCCTGACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCAATTGTGCCTTTCCAACCTGCCCTCTTCCTTGTCCTGACACAA  350

seq1  AGAGCATACAGCAATGGCCCAGAGGAAAATATGAACGGCAAAGGAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATACAGCAATGGCCCAGAGGAAAATATGAACGGCAAAGGAGACAG  400

seq1  AGAAGGCCAGCTGGTCCTTCGAAGAAAGCAAGGGCCTGCATGTACCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCCAGCTGGTCCTTCGAAGAAAGCAAGGGCCTGCATGTACCAGGG  450

seq1  GCTGACCCCAGCCTCAGGAAATCAGCCCTTTCTTTGGACTCTTGGACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCCCAGCCTCAGGAAATCAGCCCTTTCTTTGGACTCTTGGACATG  500

seq1  AACAACACAGGTTCCAAGGGCAGTGAAAAACATTTCCCTGCCAGAGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACACAGGTTCCAAGGGCAGTGAAAAACATTTCCCTGCCAGAGACTG  550

seq1  CATTCCTCTGCAGCAGTGGGGGCTTTGAGGCCAAGGTTGATCCGGTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTCTGCAGCAGTGGGGGCTTTGAGGCCAAGGTTGATCCGGTCTCC  600

seq1  ACTTTTGACTACTCAGGGGCACTGACCCAGCGGCCTCCCAAGAGACTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGACTACTCAGGGGCACTGACCCAGCGGCCTCCCAAGAGACTCAC  650

seq1  CCTGGAGAGAGCGAGCTGGAGCCAACTTCCCCCACGGTCTGAGTAGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGAGAGCGAGCTGGAGCCAACTTCCCCCACGGTCTGAGTAGTCAC  700

seq1  CGCTAAGTGTTCGTTCGGAGACAGGTGACTTGGCCACTGCCCTAGCCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAAGTGTTCGTTCGGAGACAGGTGACTTGGCCACTGCCCTAGCCCCA  750

seq1  AGGCATGAACCTGCTTCACTCCCTTCCCCAGGCCTACTCTACCCAAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGAACCTGCTTCACTCCCTTCCCCAGGCCTACTCTACCCAAGCTA  800

seq1  GATCAGATGCCTATCTTTTTCAGCCTCGGGTTATCCAAAGAGAAGTCA-G  849
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  GATCAGATGCCTATCTTTTTCAGCCTCGGGTTATCCAAAGAG-AGTCAGG  849

seq1  GGGGGCGGGGGGGG  863
      ||||||||||||||
seq2  GGGGGCGGGGGGGG  863