BAC Information

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BAC

Clone NameB6Ng01-106B13
Chromosome19 (Build37)1 (Build37)
Map Location 8,956,476 - 8,960,640136,318,190 - 136,318,964
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493
Downstream gene1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106B13.bB6Ng01-106B13.g
ACCDH913933DH913934
length785768
definitionDH913933|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B13, 5' end.DH913934|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,956,476 - 8,960,640)(136,318,190 - 136,318,964)
sequence
gaattcactctgtagaccaggctggccttgaactcaaatctgcctgcctc
tgcctcccaagtgctggaatcaaaggcgtgcgccaccacacccggctcat
aaaccttttaaggagtagcacagagccttttaacccagcactttggagac
agaggcagcctggtctacttagctagttccagtgagccagggatataatc
tataatcccagctaggtgggatgctgaggtggcagtaaactatcagcttt
cagagctccttgtctaccatgcatagaaccccaggtttggaccccagcac
aatataaactaggcttggtggtccatgcttgtactcctagcacttagatg
aacattgagaattcaaggtcatcctctcaactacattggtacatgggggt
gggtggggcagtcaaagccaatataggttacatgagacttgtctcacatt
aaacacacacacacacacacacacacacacacacacacacacacacacac
acacacacacacacacacgagagcacggggagggggaggggcctcgtgat
ggcacactctagtccaggaaagatcaacgaagtgagatcttcaagatttt
caagttcaagtctgcaggccagccttcccagcactgagactctgtgtcaa
ataaacagaggagtgggatggagagggaaccttatacaaaagagattcaa
aagctgggaagtgtgaggactggctttcttaccagaataattctctgtag
actccttcaagctggctgtggtggtgtgatcccaa
gaattctgattcttccttaaggatcgtgcatgactgtgtctagtttatac
aaagtattttgagtggggcttagatttatgggctgtggtggttgggacgc
gctcttgcagagccggtgatttaggggtgtgtgtgtggcaaagggcggac
ttggggagcctccttgtcttttaaacttcctgcttccgggtagatcattg
cttgctgtgaggagtgtgatgaaggcttcttattagagccttgagcccag
gctgtaaccctgaaaatgagcggatttgcagaggaaacaaccagcgggca
tacccagccttttcccatgcaagatgtgcttgtcacgtctatctaaaggc
caaatgagtacagttgacacttaatccattcctaagcctgtatgctctct
caatattgtagccagatgtgggcttcacttaaagaaagaaggtaggcatg
gtggtgcgcacctttgatgtcagcactcgggaggcagaggcagaggcagg
taggtgtatttcttgagtttgaaaccaggctcatctacatattaagtttt
aggccaactagagctacatagtgagatggtctcactcccccctttcccgc
cccacaaagaaatagatttatttgtgtactgaaatgaaacagccagactt
gagggcatagcctacagctggtcttggtggtttgatgtcagttgcgcggt
ctaggctttcatggggggaatgggctggggggtggtgggggtccccttct
ccgagcgggctcattggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8956476_8960640
seq2: B6Ng01-106B13.b_48_539 (reverse)

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||    ||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT----TT  46

seq1  AATATG-GTCCCCCCTCTTTTTTTTTTTAAGAGCTTGTAGGATTTCACTT  99
      ||| || | |    ||| | |          | | | ||    ||  |||
seq2  AATGTGAGACAAGTCTCATGT----------AACCTATA----TTGGCTT  82

seq1  TGTAGTCCTGATTGCCCTAGATCTTTCTAAGTAG--ACCAGGCTAGCATT  147
      ||    ||  |    ||   || |  | | ||||     ||| |  | ||
seq2  TGACTGCCCCACCCACCCCCATGTACCAATGTAGTTGAGAGGATGACCTT  132

seq1  GAGGTCTCAGAGTTTTGCCTGCCTGTTCTTCTAGAGAGCT-GGAGTTTAA  196
      ||  |||||              ||||| |||| || ||| |||||  ||
seq2  GAATTCTCA-------------ATGTTCATCTA-AGTGCTAGGAGTACAA  168

seq1  GGCTTATGCTACCAAACCTGGCTCCTCTTCATCATTGTTGTCATTGTCAT  246
       || |   | ||||| ||| |      || || |||||      ||   |
seq2  -GCATGGACCACCAAGCCTAG------TTTAT-ATTGT----GCTGGGGT  206

seq1  CATAAGCAGGTTCTTAGCTCTCTTCGCTGGTTTTGAGCATACTCTGTAGT  296
      |  || | ||      | ||| | |  ||||       | ||   |   |
seq2  CCAAACCTGG-----GGTTCTATGC-ATGGT-------AGACAAGGAGCT  243

seq1  CTAAGAAACCTTGTATTTACAACCTCCTGCCTTAACTCCCCCTACCCCCT  346
      ||  |||| ||  || ||      | |||||  | |||  | | || |||
seq2  CT--GAAAGCTGATAGTT------TACTGCC--ACCTCAGCATCCCACCT  283

seq1  CTTTTGAGACACGGTTTCAAAGTTTTTCTGTGTAGCCCTGGCTGTCCTGG  396
            || |  || || | || |      | || ||||||||   ||||
seq2  ------AG-CTGGGATT-ATAGAT------TATATCCCTGGCT-CACTGG  318

seq1  AATTCACTTTGTTGACCAGGTTGGCCTCAGACTCAGAGATCTGCCCAACT  446
      || |  ||  || ||||||| | ||||| | ||           ||||  
seq2  AACTAGCTAAGTAGACCAGGCT-GCCTCTGTCT-----------CCAA--  354

seq1  CTACTTCTCTAGTGCTACAATTGAAGGCCAGTATCACCAACACCTGACTG  496
                ||||||    |  |||||   | |   | || |||     
seq2  ----------AGTGCTGGGTTAAAAGGC---TCTGTGCTACTCCT-----  386

seq1  ATATGTAGAATATTTTAAAGAATTCATCTGGTATGCAGATATATAGGGTG  546
           || ||  |||        | | | ||              | |||
seq2  -----TAAAAGGTTT-------ATGAGCCGG--------------GTGTG  410

seq1  GTAGTGGGATTAAGTACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  596
      ||    ||   | |  ||||| || |||||||||||||||||||||||||
seq2  GT----GGCGCACG--CCTTTGATTCCAGCACTTGGGAGGCAGAGGCAGG  454

seq1  CAGATTTCTGAGTTTGAGCTCAGCCTGATCTACAGAGTGAGTTCCTGGAC  646
      ||||||  ||||||  ||  ||||||| ||||||||||||          
seq2  CAGATT--TGAGTTCAAGGCCAGCCTGGTCTACAGAGTGA----------  492

seq1  AGCCAAAGCTATACAGAGAAACTGTCTAAAAACAAACAAACAAACAAACA  696
                                                        
seq2  --------------------------------------------------  492

seq1  AACAAACAAAAAAACAAAACAAAAATCTACAACCAAACAACAATAACAAC  746
                                                        
seq2  --------------------------------------------------  492

seq1  GACTATCACCAAACAATGAGTTCTTGGCAAGCTAGGGGAGGAGGCTCAGT  796
                                                        
seq2  --------------------------------------------------  492

seq1  GGTTAAGAGCACTGACTATGTACCAAGAGGGTCCAGATTGATTCCATCAC  846
                                                        
seq2  --------------------------------------------------  492

seq1  CTTCATGGTGTTCACAACCATCTGTAACTCCTGCCCTAAGAGATCCAGTG  896
                                                        
seq2  --------------------------------------------------  492

seq1  TCTTTTTCTGGTCTCCATGGCAGAAGATATACTTGCAGGCAAAACACCTG  946
                                                        
seq2  --------------------------------------------------  492

seq1  TACTCATAAAAATAAATACCTTTAAAGTAATAAAAAGGGTCCCTAGCAAA  996
                                                        
seq2  --------------------------------------------------  492

seq1  TAGCAAAAGCCACATAAATGTTCATTAAATAACACACAAATGGACCCAGA  1046
                                                        
seq2  --------------------------------------------------  492

seq1  AATGGAAAGATGGCTCAGCTGTTGAGAATTCTAGCTGCTCTTCCAGAAGA  1096
                                                        
seq2  --------------------------------------------------  492

seq1  TCTGGGTTCAATTTTCTGCACCCACATGCCAGCTCTGTTTGTAACTCAGG  1146
                                                        
seq2  --------------------------------------------------  492

seq1  CCTAGAACTTCTGATACCTCATACAGATATTATTCACGGAAAACAGTAAT  1196
                                                        
seq2  --------------------------------------------------  492

seq1  AGACATTACATATATTTAAGACAACAACAAGCTGGGCGTGGTGGCGCACA  1246
                                                        
seq2  --------------------------------------------------  492

seq1  CCTTTAATCCCAGCACTTGGGAGGCAAAGGCAGGTGGATTTCTGAGTTCG  1296
                                                        
seq2  --------------------------------------------------  492

seq1  AGGTCAGCCTGGTCTACAGAGTGACTTCCAGGACAGCCAGGGCTATACAG  1346
                                                        
seq2  --------------------------------------------------  492

seq1  AGAAACCCTATCTTGAAAAACCAAACCAAACCAAAAACAAAAAACAAAAA  1396
                                                        
seq2  --------------------------------------------------  492

seq1  AACAAAACAAAACAAAACAAAAAACCCAAACAACAACAACAAAACCAAAC  1446
                                                        
seq2  --------------------------------------------------  492

seq1  CAAGTCCACTTGAGAAAACCAGTAAAAAAGGAGTTGGGAAGCTGGGCGTG  1496
                                                        
seq2  --------------------------------------------------  492

seq1  GTGGCGCACGCCTTTAATCCCAGCACTCTGGAGGCAGAGGCAGGTGGATT  1546
                                                        
seq2  --------------------------------------------------  492

seq1  TCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTGCCAGGACAGCCAG  1596
                                                        
seq2  --------------------------------------------------  492

seq1  GGCTACACAGAGAAACCCTGTCTTGAAAAATCAAAAAAAAAAAAAGGAGT  1646
                                                        
seq2  --------------------------------------------------  492

seq1  TGGGAAATCCATCGTCACCCCGGCTCTTTATTTATAGGGCTTTAATCCAG  1696
                                                        
seq2  --------------------------------------------------  492

seq1  ATGCCCTTGTCTCCTACCTTGCCTGCCATCCCCAGTGTCTCAGGGAGTAC  1746
                                                        
seq2  --------------------------------------------------  492

seq1  ACAGACTAAAGCTCTGTCTTTCCTCTTTGGCATCTCCCTCCCATGGAAGG  1796
                                                        
seq2  --------------------------------------------------  492

seq1  CCCATAATCTCCCAGCATGTCATCATGCTTTCCTCAGCAGTGATTAAGAG  1846
                                                        
seq2  --------------------------------------------------  492

seq1  GCCCTCTCCAAAGAGGATTAAAGCACAGTCTGTGTGGGCACTGGACACAG  1896
                                                        
seq2  --------------------------------------------------  492

seq1  GGACTTGACCTGGAATCCAACCATCTCCACGTTTACAGAGTTACTATCAT  1946
                                                        
seq2  --------------------------------------------------  492

seq1  GGCCCTTGTGCCAGAGAGTAGCAAGGATGGATCTTGGTCTGGAGATAACC  1996
                                                        
seq2  --------------------------------------------------  492

seq1  CAGACTCTCCATGGCATCCAGAAAGTCCTCAGTTGGCCAACCCCCTTTCA  2046
                                                        
seq2  --------------------------------------------------  492

seq1  AAAAACAGAGAAGAGACTGGCAGATGTGAAGATCATCAGGATGTTGAGGT  2096
                                                        
seq2  --------------------------------------------------  492

seq1  CAGTATTACTATACCACGTCCTGTGACAGGCTCATCTTCGAATTGTGCCC  2146
                                                        
seq2  --------------------------------------------------  492

seq1  AACACCCCTGCTGTACTTATGCAGGTGTCTCAAAAGCCCCGCCTGCCCTC  2196
                                                        
seq2  --------------------------------------------------  492

seq1  TATTGTGGTAGAGGCCTCAGAGGGGAGTGAGGAAGACCAGGAAGACCACC  2246
                                                        
seq2  --------------------------------------------------  492

seq1  AGTGGCCACATGAGGAGTTGCTGGTGCTCACTGATGGTGAAGAAGACGCA  2296
                                                        
seq2  --------------------------------------------------  492

seq1  GAAGCTTTCTTCCAGGATCAAAGTGAAGAGCCAGGTGAAAGTGGTGGCTG  2346
                                                        
seq2  --------------------------------------------------  492

seq1  ATTCGTTCAGGCCATTGACATTTAGATATTTTAGACCCACAATAGATGTC  2396
                                                        
seq2  --------------------------------------------------  492

seq1  CAGGAATGTTAGAAAGAGGAGGTGTGGTGTGGTGTAGGAAGAAGGTGCAT  2446
                                                        
seq2  --------------------------------------------------  492

seq1  AATAGCATGCACAGAACCCTGGGTCCCAATCCTTGTACCACACATGTGTG  2496
                                                        
seq2  --------------------------------------------------  492

seq1  CGGGCGTGCGTGCACACACACACACACACACACACACACACACACACACA  2546
                                                        
seq2  --------------------------------------------------  492

seq1  CACTGGATGAGAGAAGTCTAGGCAGCTGATATCATTGATGAACACTAGTG  2596
                                                        
seq2  --------------------------------------------------  492

seq1  GACAATTAGAGTGTTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTAAAG  2646
                                                        
seq2  --------------------------------------------------  492

seq1  AAGTTTCACTATATAGTTCAAACCGTCCTCAAACTAAAGGTCCTCCTGCT  2696
                                                        
seq2  --------------------------------------------------  492

seq1  TCAGCCTTCCAAACTGTAGATACAAGCCTCTAACACCATGCCTGGCTTGC  2746
                                                        
seq2  --------------------------------------------------  492

seq1  TTGTTTGTTTATACCTTTATTTAAGCACTGAAGAGAGAGCCTAGAGAGAT  2796
                                                        
seq2  --------------------------------------------------  492

seq1  ACTGCACTGCTTCACTATATTTCCAGTCCTTTTTTAATTAAATTAATTAA  2846
                                                        
seq2  --------------------------------------------------  492

seq1  TTAATTAATTAATTTGAGACAGGCTCACCTTGTACCTCAGACTGACCTGG  2896
                                                        
seq2  --------------------------------------------------  492

seq1  AGCTCACTGTGTAGCCCTGGCTGGCCTTGAACTCTTGTACTCCTTTAACT  2946
                                                        
seq2  --------------------------------------------------  492

seq1  TCAGCCATCTGAGTACTTGAGATTATTACAAAGTAGAGCTACAGGCTCTA  2996
                                                        
seq2  --------------------------------------------------  492

seq1  CACCCTGCCTGGTTTAGCGGGCCATTCTGATCTTGGAATGAGTGACGTCA  3046
                                                        
seq2  --------------------------------------------------  492

seq1  CCTTAAAAAAAAATCTAGGTGAGTGATGATGTCACATGCCTTTTATCCAA  3096
                                                        
seq2  --------------------------------------------------  492

seq1  AGACTCAAGAGACAGGGATAGGGAGATCTCTGAGTTCGAGGCCAGTCTGG  3146
                                                        
seq2  --------------------------------------------------  492

seq1  TCTACAGGTCAAGTTCTAGGACAGCTAGGGCCATACAGAGAAACCCTATC  3196
                                                        
seq2  --------------------------------------------------  492

seq1  TTGGAAGAAAAAAATGTTTTTAAACTTGGTGGCTTCTGCCTTTAATCCAG  3246
                                                        
seq2  --------------------------------------------------  492

seq1  ACTCTTTGGAGACAGACAGGCCGATCTGAGGCAGACAAGGCAGACCTGAG  3296
                                                        
seq2  --------------------------------------------------  492

seq1  GCCAGACTGATCTACATAGTGTGCATGTGACTCCAAACATTAAAAATAGT  3346
                                                        
seq2  --------------------------------------------------  492

seq1  ATTTTTATGTGCTTGTGAGTATGGGTGTGTGTATGTATGTCTGAGGATAA  3396
                                                        
seq2  --------------------------------------------------  492

seq1  TGGCTCGTCCTTGTCTCGTGGGAGCTTGTTCTGTCAGTCCACCTTGTGGG  3446
                                                        
seq2  --------------------------------------------------  492

seq1  ATCTGGGCACTGAACTCACTGCCAGTGAGTGATCTTACCTGTGGAGTGAC  3496
                                                        
seq2  --------------------------------------------------  492

seq1  ACTCTCTCTCTACTATTTGTGTGCATGGTTTTTGTTTTCCTTTGTTTGTA  3546
                                                        
seq2  --------------------------------------------------  492

seq1  CTGTTGAGGATTGAACCCAGGGCTTTAAAGCACTTTTTAAAAAATGTTTA  3596
                                                        
seq2  --------------------------------------------------  492

seq1  TGTGGCTGGGCCACTGGTGGTGCACACTTTTAATCCCAGCACTTCGAGGC  3646
                                                        
seq2  --------------------------------------------------  492

seq1  AGAGGCAGGATCTGAGTTTCCACACATCGAGTTGCAGAACAACCAGAGCT  3696
                                                        
seq2  --------------------------------------------------  492

seq1  ATGCATTGAGACCCTGTGTTAAGCAGGACAACGATGGATGTGGGTCTTAG  3746
                                                        
seq2  --------------------------------------------------  492

seq1  CAATTAAGCACCCTGATACTTGGCTCACTTGAGCTTTTGCTGGCTAAGCT  3796
                                                        
seq2  --------------------------------------------------  492

seq1  GTTTGACCAGCCCCACAAATGAAGGCCTTTTGCATGTTAGGTAATTTATC  3846
                                                        
seq2  --------------------------------------------------  492

seq1  AGCTACTGAGCTTCACCTGTAGCCTTAATTTGCTTTTGTCCCTTTTTGTT  3896
                                                        
seq2  --------------------------------------------------  492

seq1  CTGGAGATATGATTTATTATTTATCTTGCATGGCTCGGATCTTGCTGGTG  3946
                                                        
seq2  --------------------------------------------------  492

seq1  TCTAATAATATTTTAATGGCTCATTACTGGGGAAGGAAGATGATGTAATT  3996
                                                        
seq2  --------------------------------------------------  492

seq1  ACCCTGTATCTATCTAGAGGTAATTAACATTTTGGAGGTTAATGAACGGC  4046
                                                        
seq2  --------------------------------------------------  492

seq1  TGTATGTTGTTATTAAAAAGTTGTTGCCGGGTGTGGTGGCACACGCCTTT  4096
                                                        
seq2  --------------------------------------------------  492

seq1  AATCCTAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCC  4146
                                                        
seq2  --------------------------------------------------  492

seq1  AGCCTGGTCTACAAAGTGA  4165
                         
seq2  -------------------  492

seq1: chr1_136318190_136318964
seq2: B6Ng01-106B13.g_68_835

seq1  GAATTCTGATTCTTCCTTAAGGATCGTGCATGACTGTGTCTAGTTTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTCTTCCTTAAGGATCGTGCATGACTGTGTCTAGTTTATAC  50

seq1  AAAGTATTTTGAGTGGGGCTTAGATTTATGGGCTGTGGTGGTTGGGACGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTTGAGTGGGGCTTAGATTTATGGGCTGTGGTGGTTGGGACGC  100

seq1  GCTCTTGCAGAGCCGGTGATTTAGGGGTGTGTGTGTGGCAAAGGGCGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGCAGAGCCGGTGATTTAGGGGTGTGTGTGTGGCAAAGGGCGGAC  150

seq1  TTGGGGAGCCTCCTTGTCTTTTAAACTTCCTGCTTCCGGGTAGATCATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGCCTCCTTGTCTTTTAAACTTCCTGCTTCCGGGTAGATCATTG  200

seq1  CTTGCTGTGAGGAGTGTGATGAAGGCTTCTTATTAGAGCCTTGAGCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTGAGGAGTGTGATGAAGGCTTCTTATTAGAGCCTTGAGCCCAG  250

seq1  GCTGTAACCCTGAAAATGAGCGGATTTGCAGAGGAAACAACCAGCGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAACCCTGAAAATGAGCGGATTTGCAGAGGAAACAACCAGCGGGCA  300

seq1  TACCCAGCCTTTTCCCATGCAAGATGTGCTTGTCACGTCTATCTAAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGCCTTTTCCCATGCAAGATGTGCTTGTCACGTCTATCTAAAGGC  350

seq1  CAAATGAGTACAGTTGACACTTAATCCATTCCTAAGCCTGTATGCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGTACAGTTGACACTTAATCCATTCCTAAGCCTGTATGCTCTCT  400

seq1  CAATATTGTAGCCAGATGTGGGCTTCACTTAAAGAAAGAAGGTAGGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTGTAGCCAGATGTGGGCTTCACTTAAAGAAAGAAGGTAGGCATG  450

seq1  GTGGTGCGCACCTTTGATGTCAGCACTCGGGAGGCAGAGGCAGAGGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCGCACCTTTGATGTCAGCACTCGGGAGGCAGAGGCAGAGGCAGG  500

seq1  TAGGTGTATTTCTTGAGTTTGAAACCAGGCTCATCTACATATTAAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTATTTCTTGAGTTTGAAACCAGGCTCATCTACATATTAAGTTTT  550

seq1  AGGCCAACTAGAGCTACATAGTGAGATGGTCTCAACTCCCCCCCTTTCCC  600
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  AGGCCAACTAGAGCTACATAGTGAGATGGTCTC-ACT-CCCCCCTTTCCC  598

seq1  GCCCCACAAAGAAAATAGATTTATTTGTGTACTGAAATGAAACAGCCAGA  650
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACAAAG-AAATAGATTTATTTGTGTACTGAAATGAAACAGCCAGA  647

seq1  CTTGAGAGCATAGCCTACAGCTGGTCTTGGTGTTTTGATGTCAGTTGCGC  700
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTGAGGGCATAGCCTACAGCTGGTCTTGGTGGTTTGATGTCAGTTGCGC  697

seq1  -GTCTAGGCCTTTCATGGGGGGAATGGGCTTGAGGAGTGGTGGGCGTCGC  749
       ||||||| |||||||||||||||||||| || || |||||||| ||| |
seq2  GGTCTAGG-CTTTCATGGGGGGAATGGGC-TGGGGGGTGGTGGGGGTC-C  744

seq1  CCTTCTCACGAGCGGGCTCCATTGGG  775
      ||||||| |||||||||| |||||||
seq2  CCTTCTC-CGAGCGGGCT-CATTGGG  768