BAC Information

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BAC

Clone NameB6Ng01-106C08
Chromosome1 (Build37)
Map Location 40,339,506 - 40,525,642
singlet/doubletdoublet
Overlap geneIl1r1, Il1rl2, Il1rl1, Il18r1
Upstream geneNpas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2
Downstream geneIl18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106C08.bB6Ng01-106C08.g
ACCDH913968DH913969
length1,131699
definitionDH913968|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C08, 5' end.DH913969|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,524,481 - 40,525,642)(40,339,506 - 40,340,202)
sequence
gaattctacccaatttgtttaatttctcttttggcatattagcatataga
aaactttataaccatgcatacaagtcaatactcttgtgtgtgtgtgtgtg
tctgagtgtgtgtgtttccatcattttaaagtggagatcattctgtattt
ccctcaaaggtaacacagacattcctatattcctcagttttatgatttca
tcctgacatttgacttatttctaaacttacaaacatttcatttacttctt
tgtcaggaaaatgggaccgaattaaacttctacttccaaaataactatga
attatttctctgtccaatcaattagtgttacctttcctttgaagttggtt
gatatccatttaccaagaaaaggctctcctagagctcgattggaaatcta
gcacaggtaggtgcctggccaaaagcacatgtgtgtaagcatgaacacac
tcactttctctcggttctcactgtgccaacgttccatagcagctgatact
aaccagcctgagccactctatattggcttctttgctaaatcgttgaatga
aagaagcttacaaaatacatacagatgcaagtcccgactcatcattcgat
ttattgcacacctacaccatctctgacttcttaaagcataatgtcttcaa
aggtttattttgacagacatgctgcccactaaacacacacgggaggcagc
ctgagcccttgactcttccacattcccagctgattccagtgtacaaacaa
atggaaagccaccaatctataggtcttgcctgtgcactcagaaaagtaca
tttcttattagacacattcagttcatagttgacataaaaaatataaaatt
aatccatatgcaagcatgtatgtgtgtgctcataatagaaaggatagtta
caaacttagttgcccaatgacataaacttttctctagattaaatagtgct
cttccaaacgttttgtgatctgaggcataggtgaatgccagatgcagtga
cagtatctctgtcctcagacaggagtctttcaaaggatgtcaatgtgtca
tgtctaagtctgagtttcgttcttcttggttctaccatgagaaactgacc
attctagtaaaaagtcacctgagacatagat
gaattcttgtccgatttcttcatttttatggtctcttcttcatttcttgc
catacatctattgagcttttacagtgtgtcagctggtagggaatgaagct
atagcagtgaacaatcttatgcaggcagctgctggctggtcccattcctc
ctgggagagacagaatatgttgcttaagttatgtagtagtgtggataagg
tagtcagaaactctaggaaaacacagagtatctggggatggaagtagaca
gaaggttcagttttacacaaaactatctcacagaaaggttggttttgact
agaacctgaaggagggatgaaagacaccatgggggaaagatgctggggga
ggaaagcgacctttgcagcgtgtgcaaaggcccagagcgtcaggcttatc
ctcgcacctcaatacctagtagagaccaacgagaggccagaacacacaaa
gttactgggttaatggagagatgatagagggattggggaaaaccttgaat
gctttttgaagaatcttgacttggctggcctgaattctttgttcaaaatg
agaagggttgaagacaggatgtgatgggggtgactccaggcttactgaaa
aaatgagaacatgattccaatctgtagcacccatgtaaagagtcacacgt
cactattgcaaggggcctgtactctagtgctgggggggttagacacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_40524481_40525642
seq2: B6Ng01-106C08.b_46_1176 (reverse)

seq1  ATCTATGTGCTCAGATGAACTGTTTTTACTAGAATGTGGTCAGTTTCCTC  50
      |||||||| ||||| |||    ||||||||||||  |||||||||| |||
seq2  ATCTATGT-CTCAGGTGA---CTTTTTACTAGAA--TGGTCAGTTT-CTC  43

seq1  ATGGTAAGGACCCAAAAGGACAGAACAGAAACTCAGGACCTAAGGACATG  100
      ||||||  || |||| |    ||||| |||||||| ||| ||  ||||||
seq2  ATGGTA--GAACCAAGA----AGAAC-GAAACTCA-GACTTA--GACATG  83

seq1  ACCACATTGACATCCTTTGAAAGGACTCCCTTGTCTTGGGGGACAGAGAT  150
      | |||||||||||||||||||| ||||||  |||||  | ||||||||||
seq2  A-CACATTGACATCCTTTGAAA-GACTCC--TGTCT--GAGGACAGAGAT  127

seq1  ACTTGTCACCTTGCATCTGGCCTTCACCCTATGCCTCCAGATCACAAAAC  200
      || ||||||  |||||||||| |||| ||||||||| |||||||||||||
seq2  AC-TGTCAC--TGCATCTGGCATTCA-CCTATGCCT-CAGATCACAAAAC  172

seq1  GTTTGGAAGAGCACTTAATTTAATCTAGAGAAAAGTTTATGTCATTGGGC  250
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  GTTTGGAAGAGCACT--ATTTAATCTAGAGAAAAGTTTATGTCATTGGGC  220

seq1  AACTAAGTTTGTAACTATCCTTTCTATTTATGAGCACACACATACATGCT  300
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AACTAAGTTTGTAACTATCCTTTCTA-TTATGAGCACACACATACATGCT  269

seq1  TGCATATGGATTAATTTTATATTTTTTATGTCAACTATGAACTGAATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGGATTAATTTTATATTTTTTATGTCAACTATGAACTGAATGTG  319

seq1  TCTAATAAGAAATGTACTTTTCTGAGTGCACAGGCAAGACCTATAGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAGAAATGTACTTTTCTGAGTGCACAGGCAAGACCTATAGATTG  369

seq1  GTGGCTTTCCATTTGTTTGTACACTGGAATCAGCTGGGAATGTGGAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTCCATTTGTTTGTACACTGGAATCAGCTGGGAATGTGGAAGAG  419

seq1  TCAAGGGCTCAGGCTGCCTCCCGTGTGTGTTTAGTGGGCAGCATGTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGCTCAGGCTGCCTCCCGTGTGTGTTTAGTGGGCAGCATGTCTGT  469

seq1  CAAAATAAACCTTTGAAGACATTATGCTTTAAGAAGTCAGAGATGGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAACCTTTGAAGACATTATGCTTTAAGAAGTCAGAGATGGTGTA  519

seq1  GGTGTGCAATAAATCGAATGATGAGTCGGGACTTGCATCTGTATGTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCAATAAATCGAATGATGAGTCGGGACTTGCATCTGTATGTATTT  569

seq1  TGTAAGCTTCTTTCATTCAACGATTTAGCAAAGAAGCCAATATAGAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCTTCTTTCATTCAACGATTTAGCAAAGAAGCCAATATAGAGTGG  619

seq1  CTCAGGCTGGTTAGTATCAGCTGCTATGGAACGTTGGCACAGTGAGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTGGTTAGTATCAGCTGCTATGGAACGTTGGCACAGTGAGAACC  669

seq1  GAGAGAAAGTGAGTGTGTTCATGCTTACACACATGTGCTTTTGGCCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGTGAGTGTGTTCATGCTTACACACATGTGCTTTTGGCCAGGC  719

seq1  ACCTACCTGTGCTAGATTTCCAATCGAGCTCTAGGAGAGCCTTTTCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCTGTGCTAGATTTCCAATCGAGCTCTAGGAGAGCCTTTTCTTGG  769

seq1  TAAATGGATATCAACCAACTTCAAAGGAAAGGTAACACTAATTGATTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGATATCAACCAACTTCAAAGGAAAGGTAACACTAATTGATTGGA  819

seq1  CAGAGAAATAATTCATAGTTATTTTGGAAGTAGAAGTTTAATTCGGTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATAATTCATAGTTATTTTGGAAGTAGAAGTTTAATTCGGTCCC  869

seq1  ATTTTCCTGACAAAGAAGTAAATGAAATGTTTGTAAGTTTAGAAATAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTGACAAAGAAGTAAATGAAATGTTTGTAAGTTTAGAAATAAGT  919

seq1  CAAATGTCAGGATGAAATCATAAAACTGAGGAATATAGGAATGTCTGTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCAGGATGAAATCATAAAACTGAGGAATATAGGAATGTCTGTGT  969

seq1  TACCTTTGAGGGAAATACAGAATGATCTCCACTTTAAAATGATGGAAACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTGAGGGAAATACAGAATGATCTCCACTTTAAAATGATGGAAACA  1019

seq1  CACACACTCAGACACACACACACACACAAGAGTATTGACTTGTATGCATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCAGACACACACACACACACAAGAGTATTGACTTGTATGCATG  1069

seq1  GTTATAAAGTTTTCTATATGCTAATATGCCAAAAGAGAAATTAAACAAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAAGTTTTCTATATGCTAATATGCCAAAAGAGAAATTAAACAAAT  1119

seq1  TGGGTAGAATTC  1162
      ||||||||||||
seq2  TGGGTAGAATTC  1131

seq1: chr1_40339506_40340202
seq2: B6Ng01-106C08.g_71_769

seq1  GAATTCTTGTCCGATTTCTTCATTTTTATGGTCTCTTCTTCATTTCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCCGATTTCTTCATTTTTATGGTCTCTTCTTCATTTCTTGC  50

seq1  CATACATCTATTGAGCTTTTACAGTGTGTCAGCTGGTAGGGAATGAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATCTATTGAGCTTTTACAGTGTGTCAGCTGGTAGGGAATGAAGCT  100

seq1  ATAGCAGTGAACAATCTTATGCAGGCAGCTGCTGGCTGGTCCCATTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGTGAACAATCTTATGCAGGCAGCTGCTGGCTGGTCCCATTCCTC  150

seq1  CTGGGAGAGACAGAATATGTTGCTTAAGTTATGTAGTAGTGTGGATAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAGACAGAATATGTTGCTTAAGTTATGTAGTAGTGTGGATAAGG  200

seq1  TAGTCAGAAACTCTAGGAAAACACAGAGTATCTGGGGATGGAAGTAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGAAACTCTAGGAAAACACAGAGTATCTGGGGATGGAAGTAGACA  250

seq1  GAAGGTTCAGTTTTACACAAAACTATCTCACAGAAAGGTTGGTTTTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTCAGTTTTACACAAAACTATCTCACAGAAAGGTTGGTTTTGACT  300

seq1  AGAACCTGAAGGAGGGATGAAAGACACCATGGGGGAAAGATGCTGGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTGAAGGAGGGATGAAAGACACCATGGGGGAAAGATGCTGGGGGA  350

seq1  GGAAAGCGACCTTTGCAGCGTGTGCAAAGGCCCAGAGCGTCAGGCTTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCGACCTTTGCAGCGTGTGCAAAGGCCCAGAGCGTCAGGCTTATC  400

seq1  CTCGCACCTCAATACCTAGTAGAGACCAACGAGAGGCCAGAACACACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCACCTCAATACCTAGTAGAGACCAACGAGAGGCCAGAACACACAAA  450

seq1  GTTACTGGGTTAATGGAGAGATGATAGAGGGATTGGGGAAAACCTTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGGGTTAATGGAGAGATGATAGAGGGATTGGGGAAAACCTTGAAT  500

seq1  GCTTTTTGAAGAATCTTGACTTGGCTGGCCTGAATTCTTTGTTCAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTGAAGAATCTTGACTTGGCTGGCCTGAATTCTTTGTTCAAAATG  550

seq1  AGAAGGGTTGAAGACAGGAGGTGATGGGGGTGACTCCAGGCTTACTG-AA  599
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  AGAAGGGTTGAAGACAGGATGTGATGGGGGTGACTCCAGGCTTACTGAAA  600

seq1  AAATGAGAACATGATTCCAATCTGTAGCACCCATGTAAAGAGTCACACGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAACATGATTCCAATCTGTAGCACCCATGTAAAGAGTCACACGT  650

seq1  CACTA-TGCAA-GGGCCTGTAGCTCTAGTGCTGTGGGGGTTAGACACAGG  697
      ||||| ||||| ||||||||| ||||||||||| |||||||||||||| |
seq2  CACTATTGCAAGGGGCCTGTA-CTCTAGTGCTGGGGGGGTTAGACACATG  699