BAC Information

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BAC

Clone NameB6Ng01-106E20
Chromosome1 (Build37)
Map Location 71,487,490 - 71,589,768
singlet/doubletdoublet
Overlap geneLOC629101
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12
Downstream geneAtic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106E20.bB6Ng01-106E20.g
ACCDH914080DH914081
length1,1481,180
definitionDH914080|Mus musculus domesticus DNA, BAC clone: B6Ng01-106E20, 5' end.DH914081|Mus musculus domesticus DNA, BAC clone: B6Ng01-106E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,487,490 - 71,488,665)(71,588,552 - 71,589,768)
sequence
gaattcagctttgtctgctctagattttctaaatttttctctatttttgg
ccataacggccaaaatgacaataatgacttctcttcctcctccttctctt
tctcctcctcctcctcctcttcctcctcttcttcttcctcctcctccttc
tcaaacaggatctcccaatacagcctaggctgtcttcgaaagtcagcatc
ctcctgccttagtgctttcaaacttcttttgaaagcactaatccaaaatt
atcacctgttttttatggccttggatttctccttgtgtgacccacagaac
tttccgtggtgtgaccctacctgtgtgttctcccgctccggaagactctc
ctcctccagctttcttctagtgccctctcctcacagtgattgcacgtgtg
tccctcagaccttctccaagttctatattcctcacattttctggagatca
ctttcttaaaaatgtctaacttaacattcacagtactgtacgtatcttct
tgatagtagccacttctagttgtgtgacagtacactactgtctgtccccc
tctaccaggctgtaaatactgaaatctttaacatattgggatcacattgt
gtctccataccctacactgtgcctgatacaaaggagatcctctgtaaact
ttgattaagtgaataatatttgcttaattatgtttcacggtgggtgaaga
tatcacatgactatgggcatgaagaagacccccttttgggattatcagga
ttcacataaaacaaaaagacaggaaataacactgacatctaggcaagaac
ttttttttcaaaacgttaccaaaaaaaatgtgaacctctttttgagccag
gcatctctttgagaataacaaatggttctgttctcaaaaaccacaaacat
agggaatatcagcagccattggtaacataggaatatcagcagccattggt
aaatgcattagcccatctcaggctgccctgaacacacacacatttcactc
agccagattcgcctagcttctgtcaccatgagcctgtgaggctgttgctt
cagctgtccctgagtccagaggtacaccgatcacttttacttttgtctag
aatctttggcacttgcttctcggcacagaaactgctataccatctgag
gaattcagtaggactgctttgtatagttgcgattcctggacctcaatgta
tacagatcaaataaaaatgcagtaggcttcttatctgtttcatgctcgga
gacactacggtggattagccagaaccaaaggttcatacatgtcacaacat
aattaataataaatattaaaaaattaaaagataaacttcaattctgcttc
atacaaactcactttgagattcttttctttagtgaagtcaaaatcctggc
ttcatctgaacagaagtctctggaataagtaacacctgcagctaggtctc
tggcttcctgggtctcttggccaggaatcctaactgtcctgactctctgc
cttcctgcccagccactggccactggcaactttatttaacaatctaagcc
aactgtggacagggttccctcggtgccttatatgcagacatgaggattct
tgtgcaattttggggacccaaattaacataacacaagcatcattagacca
aatccatgactctactctgacggactgtgtgatatcctgattgattcaag
acacttgctgaggcattcacaggctgaggctcttcctcaataacatgggc
agagtagggaaccttcatgatggttccctatctatttttgaactgatatc
tttcaaaactctgacaaaaatgagaaaagcaaataaataaaaacaacaac
aacatgggaatgaatacctttcggggtagcacacctgcccagcatgtgtg
aggacctacgctcaatttccacttctcaagcatctcaacaataagaaaag
gatggttgttagagcaagaagtgggagagatcgtttgaggaagagaagtc
aatgtgtgtcaaggccaaagagacttcagaactaagatctgtaggagagc
taggagacaccttattggtgtctctattgcaagagtgagagagcacttgg
ctaggtcttgacctgagtctatcaaataggctactctatatttagtcaca
gtagtagagcgtggtaacttttgtaagtttagtttagaacttatgcacgg
atttgttctagagtacacgagaaacatgatgcatcaaactttaactttga
gcacgccgagataagaaaatgttgcatgaagcaatgcattaagttaaagt
ggggtggaagccgaatggctcacagttaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_71487490_71488665
seq2: B6Ng01-106E20.b_39_1186

seq1  GAATTCAGCTTTGTCTGCTCTAGATTTTCTAAATTTTTCTCTATTTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTTGTCTGCTCTAGATTTTCTAAATTTTTCTCTATTTTTGG  50

seq1  CCATAACGGCCAAAATGACAATAATGACTTCTCTTCCTCCTCCTTCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACGGCCAAAATGACAATAATGACTTCTCTTCCTCCTCCTTCTCTT  100

seq1  TCTCCTCCTCCTCCTCCTCTTCCTCCTCTTCTTCTTCCTCCTCCTCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCTCCTCCTCCTCTTCCTCCTCTTCTTCTTCCTCCTCCTCCTTC  150

seq1  TCAAACAGGATCTCCCAATACAGCCTAGGCTGTCTTCGAAAGTCAGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGGATCTCCCAATACAGCCTAGGCTGTCTTCGAAAGTCAGCATC  200

seq1  CTCCTGCCTTAGTGCTTTCAAACTTCTTTTGAAAGCACTAATCCAAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTTAGTGCTTTCAAACTTCTTTTGAAAGCACTAATCCAAAATT  250

seq1  ATCACCTGTTTTTTATGGCCTTGGATTTCTCCTTGTGTGACCCACAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTGTTTTTTATGGCCTTGGATTTCTCCTTGTGTGACCCACAGAAC  300

seq1  TTTCCGTGGTGTGACCCTACCTGTGTGTTCTCCCGCTCCGGAAGACTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGTGGTGTGACCCTACCTGTGTGTTCTCCCGCTCCGGAAGACTCTC  350

seq1  CTCCTCCAGCTTTCTTCTAGTGCCCTCTCCTCACAGTGATTGCACGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCAGCTTTCTTCTAGTGCCCTCTCCTCACAGTGATTGCACGTGTG  400

seq1  TCCCTCAGACCTTCTCCAAGTTCTATATTCCTCACATTTTCTGGAGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGACCTTCTCCAAGTTCTATATTCCTCACATTTTCTGGAGATCA  450

seq1  CTTTCTTAAAAATGTCTAACTTAACATTCACAGTACTGTACGTATCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAAAAATGTCTAACTTAACATTCACAGTACTGTACGTATCTTCT  500

seq1  TGATAGTAGCCACTTCTAGTTGTGTGACAGTACACTACTGTCTGTCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTAGCCACTTCTAGTTGTGTGACAGTACACTACTGTCTGTCCCCC  550

seq1  TCTACCAGGCTGTAAATACTGAAATCTTTAACATATTGGGATCACATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAGGCTGTAAATACTGAAATCTTTAACATATTGGGATCACATTGT  600

seq1  GTCTCCATACCCTACACTGTGCCTGATACAAAGGAGATCCTCTGTAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATACCCTACACTGTGCCTGATACAAAGGAGATCCTCTGTAAACT  650

seq1  TTGATTAAGTGAATAATATTTGCTTAATTATGTTTCACGGTGGGTGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAAGTGAATAATATTTGCTTAATTATGTTTCACGGTGGGTGAAGA  700

seq1  TATCACATGACTATGGGCATGAAGAAGACCCCCTTTT-GGATTATCAGGA  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TATCACATGACTATGGGCATGAAGAAGACCCCCTTTTGGGATTATCAGGA  750

seq1  TTCACAT-AAACAAAAAGACAGGAAATAACACTGACATCTAGGCAAGAAC  798
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATAAAACAAAAAGACAGGAAATAACACTGACATCTAGGCAAGAAC  800

seq1  TTTTTTTTCAAAACGTTACCAAAAAAAATGTGAACCTCTTTTTGAGCCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCAAAACGTTACCAAAAAAAATGTGAACCTCTTTTTGAGCCAG  850

seq1  GCATCTCTTTTGAGAATAACAAATGGTTCTGTTCTCAAAAACCACAAACA  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTC-TTTGAGAATAACAAATGGTTCTGTTCTCAAAAACCACAAACA  899

seq1  TAGGGAATATCAGCAGCCATTGGTAACATAGGGAATATCAGCAGCCATTG  948
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAGGGAATATCAGCAGCCATTGGTAACATA-GGAATATCAGCAGCCATTG  948

seq1  GTAAAATGCATTAGCCCATCTCAGGGCTGCCCTTGAACACACACACAATT  998
      || |||||||||||||||||||| |||||||| ||||||||||||| |||
seq2  GT-AAATGCATTAGCCCATCTCA-GGCTGCCC-TGAACACACACAC-ATT  994

seq1  TCACCTCAGGCCAGGATTCGCCTAGCTTCTGTCACCATGAGCCTGTGAGG  1048
      ||| |||| |||| ||||||||||||||||||||||||||||||||||||
seq2  TCA-CTCA-GCCA-GATTCGCCTAGCTTCTGTCACCATGAGCCTGTGAGG  1041

seq1  CTG-TGCTTCCAGCTGTCCCCTTGAGTCCCAGAGGGGTAACACCGATCAC  1097
      ||| ||||| ||||||||||  ||||| |||||||    |||||||||||
seq2  CTGTTGCTT-CAGCTGTCCC--TGAGT-CCAGAGG---TACACCGATCAC  1084

seq1  TTTTACTTTTTGTTCCTAGAATCCTTTGGGCAACTGGCTTCCTCGGGGCA  1147
      |||||| ||||||  ||||||| ||||||   ||| |||| |||||    
seq2  TTTTAC-TTTTGT--CTAGAAT-CTTTGG--CACTTGCTT-CTCGG---C  1124

seq1  ACAGAAAACTGCTAAAATACCCATCTGAG  1176
      |||| ||||||||| |    |||||||||
seq2  ACAG-AAACTGCTATA----CCATCTGAG  1148

seq1: chr1_71588552_71589768
seq2: B6Ng01-106E20.g_69_1248 (reverse)

seq1  CTTAACTGCTGAGCCATCTCTCTGGCTCTTCCACCCCATCTTAACCTCTA  50
      |||||||| ||||||||   || |   |||||||||||  |||||   ||
seq2  CTTAACTG-TGAGCCAT---TCGG---CTTCCACCCCACTTTAAC--TTA  41

seq1  CTGGCATTGGCTTCTCATGCAATCATTTTCTATATCTCTGTCTGCTGCCT  100
       | ||||| |||  |||||||| |||||||| |||||| |  ||||    
seq2  AT-GCATT-GCT--TCATGCAA-CATTTTCT-TATCTCGGCGTGCT----  81

seq1  TCCAAAGTTAAAGTTTGATGCCATCATTTGTTTTCCTTTGTGTACTCTAG  150
        |||||||||||||||||| |||||  |||||    | |||||||||||
seq2  --CAAAGTTAAAGTTTGATG-CATCA--TGTTT---CTCGTGTACTCTAG  123

seq1  AACAAATCCGGTGCATAAGTTTCTAAACTAAAACTTTACAAAAGTTTACC  200
      ||||||||| ||||||||| ||||||||||||   ||||||||| |||||
seq2  AACAAATCC-GTGCATAAG-TTCTAAACTAAA--CTTACAAAAG-TTACC  168

seq1  ACGCTCTTACTACTGTGACTAAAATATAGAGTAGCCTATTTGGATAGACT  250
      |||||| ||||||||||||| |||||||||||||||||||| ||||||||
seq2  ACGCTC-TACTACTGTGACT-AAATATAGAGTAGCCTATTT-GATAGACT  215

seq1  CAGGTCAAGACCTAGCCAAGTGGCTTCTCTCACTCCTTGCAATAGAGACA  300
      ||||||||||||||||||||||   ||||||||| |||||||||||||||
seq2  CAGGTCAAGACCTAGCCAAGTG--CTCTCTCACT-CTTGCAATAGAGACA  262

seq1  CCAATAAGGTGTCTCCTAGCTCTCCTACAGATCTTAGTTCTGAAGTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAGGTGTCTCCTAGCTCTCCTACAGATCTTAGTTCTGAAGTCTCT  312

seq1  TTGGCCTTGACACACATTGACTTCTCTTCCTCAAACGATCTCTCCCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTGACACACATTGACTTCTCTTCCTCAAACGATCTCTCCCACTT  362

seq1  CTTGCTCTAACAACCATCCTTTTCTTATTGTTGAGATGCTTGAGAAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCTAACAACCATCCTTTTCTTATTGTTGAGATGCTTGAGAAGTGG  412

seq1  AAATTGAGCGTAGGTCCTCACACATGCTGGGCAGGTGTGCTACCCCG-AA  499
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAATTGAGCGTAGGTCCTCACACATGCTGGGCAGGTGTGCTACCCCGAAA  462

seq1  GGTATTCATTCCCATGTTGTTGTTGTTTTTATTTATTTGCTTTTCTCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCATTCCCATGTTGTTGTTGTTTTTATTTATTTGCTTTTCTCATT  512

seq1  TTTGTCAGAGTTTTGAAAGATATCAGTTCAAAAATAGATAGGGAACCATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGAGTTTTGAAAGATATCAGTTCAAAAATAGATAGGGAACCATC  562

seq1  ATGAAGGTTCCCTACTCTGCCCATGTTATTGAGGAAGAGCCTCAGCCTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTTCCCTACTCTGCCCATGTTATTGAGGAAGAGCCTCAGCCTGT  612

seq1  GAATGCCTCAGCAAGTGTCTTGAATCAATCAGGATATCACACAGTCCGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCTCAGCAAGTGTCTTGAATCAATCAGGATATCACACAGTCCGTC  662

seq1  AGAGTAGAGTCATGGATTTGGTCTAATGATGCTTGTGTTATGTTAATTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGAGTCATGGATTTGGTCTAATGATGCTTGTGTTATGTTAATTTG  712

seq1  GGTCCCCAAAATTGCACAAGAATCCTCATGTCTGCATATAAGGCACCGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCAAAATTGCACAAGAATCCTCATGTCTGCATATAAGGCACCGAG  762

seq1  GGAACCCTGTCCACAGTTGGCTTAGATTGTTAAATAAAGTTGCCAGTGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCTGTCCACAGTTGGCTTAGATTGTTAAATAAAGTTGCCAGTGGC  812

seq1  CAGTGGCTGGGCAGGAAGGCAGAGAGTCAGGACAGTTAGGATTCCTGGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTGGGCAGGAAGGCAGAGAGTCAGGACAGTTAGGATTCCTGGCC  862

seq1  AAGAGACCCAGGAAGCCAGAGACCTAGCTGCAGGTGTTACTTATTCCAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACCCAGGAAGCCAGAGACCTAGCTGCAGGTGTTACTTATTCCAGA  912

seq1  GACTTCTGTTCAGATGAAGCCAGGATTTTGACTTCACTAAAGAAAAGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGTTCAGATGAAGCCAGGATTTTGACTTCACTAAAGAAAAGAAT  962

seq1  CTCAAAGTGAGTTTGTATGAAGCAGAATTGAAGTTTATCTTTTAATTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTGAGTTTGTATGAAGCAGAATTGAAGTTTATCTTTTAATTTTT  1012

seq1  TAATATTTATTATTAATTATGTTGTGACATGTATGAACCTTTGGTTCTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTATTATTAATTATGTTGTGACATGTATGAACCTTTGGTTCTGG  1062

seq1  CTAATCCACCGTAGTGTCTCCGAGCATGAAACAGATAAGAAGCCTACTGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCACCGTAGTGTCTCCGAGCATGAAACAGATAAGAAGCCTACTGC  1112

seq1  ATTTTTATTTGATCTGTATACATTGAGGTCCAGGAATCGCAACTATACAA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTGATCTGTATACATTGAGGTCCAGGAATCGCAACTATACAA  1162

seq1  AGCAGTCCTACTGAATTC  1217
      ||||||||||||||||||
seq2  AGCAGTCCTACTGAATTC  1180