BAC Information

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BAC

Clone NameB6Ng01-106L23
Chromosome1 (Build37)
Map Location 148,558,663 - 148,602,843
singlet/doubletdoublet
Overlap geneB830045N13Rik, LOC100043240
Upstream geneLOC383571
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106L23.bB6Ng01-106L23.g
ACCDH914399DH914400
length1,0091,043
definitionDH914399|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L23, 5' end.DH914400|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,558,663 - 148,559,662)(148,601,773 - 148,602,843)
sequence
gaattcagtgtattaaatgcctgatactttgaccagtgatccttcatgtc
tgagttggccttttaactagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgcgtgtgcttatgtgtgcttataaacaagtatatgct
gtccaaattttgaaacccctacaggtagttttataactttttcaagaaca
gtattcaactcttcaaaagcactgaggttaagttgaattttcataaaaga
gtatttcccccaaattaaaatgtactttagcaagtaagagaattattcag
aaactcaatgaaaaaacctctgctgattgaataaaagaagattgcattaa
tatttatatatttagaagaggatgtgaacaacactataaatattatcata
tgcaggaaatacaacctataattttacattaagattgtttgcaatttatt
gcactacagtgaagagacaccatttactatgcttttatctatatcattat
tgctgactttaaaagcagatttggggggctatagtttatatatcccatat
aagtcatataaaatatccatttcaatgcatttcagtgtaggaaaactctc
agctcagtagattttagaatatcttcatcatttcatgaggaatcacaggc
actttataactgtaatcacactcaaatgcctgttaccataactggtcaca
tatttttgtctcctttgattttcttgttctaaatttttctgtaagtggca
acatggaatttttataaagttttataattacctcttgcatttagaatagt
ctttttgaggacctctataggttgtagcatgaatttgtatgtttctgata
tttttagactgaataatacttgtatacttcacaacttattcatttcaact
gataatatgacttagtcttaagattttctaaattgtactacaaacattta
cataagatatatgtgggtaaatctttcctgtttctacttaatgcattctg
gaggagtag
gaattcttgttgaaatatattttgtgaatagaatcatatggaatttgtct
ttctgtgcttcttatttctctcaacaaaatgttcttgatttccagatgtg
ttgaaaattatagaatttcattatttgagataatgtatgaggactctgct
ggtttcttaactccatggagtattcacttttaagctttcactttaactgc
cattttgtcttctgttatagagttgctatttcctatctcctttgtatgca
aaagttcacagcacagggttggaagtacctatttttagctggaccactgc
agctattgttattgagtaaagtacagtcttgatgctttagttttcattgc
cttcatgattagaatatttgaggattttttaaaaaataattttgtccatt
tatatgtaatttttatgaaaaaatgattcaggttaatttctttcaatttt
tgtttggaattttaaagttccttatattctaaatattatacaattttctg
atcattttctaaaattttcttctattttcagagtaatctttattattcat
tcttttatttgcagtatagaacttgttcattatgttttttttttttacta
tttgtagatatttgtttctattttctgtgctttaggttatttttaaaata
tattttttcttttatgtgataaaccatatctcatatgatattttttagtc
tttttgtgactttatattattttgaacattcaaaatatgtggaagtgccc
atggttgtcagactcagtcttgattaagacaaatagatttacgtctacta
ttttactgtttccgttcaacatgacaccacaagacccactgaaagcagcc
agacaagaaagctaaagggcacacagaactggaaaataacttagattatt
aaatatttgacacagcccatatctttacatatttgatactctcataatgg
gtactctatttaaacatctcactctactctcacttcattctgcttctgca
catttttctcaatatgacaaatcatctatatattatttggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_148558663_148559662
seq2: B6Ng01-106L23.b_45_1044

seq1  GAATTCAGTGTATTAAATGCCTGATACTTTGACCAGTGATCCTTCATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTATTAAATGCCTGATACTTTGACCAGTGATCCTTCATGTC  50

seq1  TGAGTTGGCCTTTTAACTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGGCCTTTTAACTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  100

seq1  TGTGTGTGTGTGTGCGTGTGCTTATGTGTGCTTATAAACAAGTATATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGCGTGTGCTTATGTGTGCTTATAAACAAGTATATGCT  150

seq1  GTCCAAATTTTGAAACCCCTACAGGTAGTTTTATAACTTTTTCAAGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAATTTTGAAACCCCTACAGGTAGTTTTATAACTTTTTCAAGAACA  200

seq1  GTATTCAACTCTTCAAAAGCACTGAGGTTAAGTTGAATTTTCATAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAACTCTTCAAAAGCACTGAGGTTAAGTTGAATTTTCATAAAAGA  250

seq1  GTATTTCCCCCAAATTAAAATGTACTTTAGCAAGTAAGAGAATTATTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCCCCCAAATTAAAATGTACTTTAGCAAGTAAGAGAATTATTCAG  300

seq1  AAACTCAATGAAAAAACCTCTGCTGATTGAATAAAAGAAGATTGCATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAATGAAAAAACCTCTGCTGATTGAATAAAAGAAGATTGCATTAA  350

seq1  TATTTATATATTTAGAAGAGGATGTGAACAACACTATAAATATTATCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATATTTAGAAGAGGATGTGAACAACACTATAAATATTATCATA  400

seq1  TGCAGGAAATACAACCTATAATTTTACATTAAGATTGTTTGCAATTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAAATACAACCTATAATTTTACATTAAGATTGTTTGCAATTTATT  450

seq1  GCACTACAGTGAAGAGACACCATTTACTATGCTTTTATCTATATCATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACAGTGAAGAGACACCATTTACTATGCTTTTATCTATATCATTAT  500

seq1  TGCTGACTTTAAAAGCAGATTTGGGGGGCTATAGTTTATATATCCCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACTTTAAAAGCAGATTTGGGGGGCTATAGTTTATATATCCCATAT  550

seq1  AAGTCATATAAAATATCCATTTCAATGCATTTCAGTGTAGGAAAACTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATATAAAATATCCATTTCAATGCATTTCAGTGTAGGAAAACTCTC  600

seq1  AGCTCAGTAGATTTTAGAATATCTTCATCATTTCATGAGGAATCACAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTAGATTTTAGAATATCTTCATCATTTCATGAGGAATCACAGGC  650

seq1  ACTTTATAACTGTAATCACACTCAAATGCCTGTTACCATAACTGGTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATAACTGTAATCACACTCAAATGCCTGTTACCATAACTGGTCACA  700

seq1  TATTTTTGTCTCCTTTGATTTTCTTGTTCTAAATTTTTCTGTAAGTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTCTCCTTTGATTTTCTTGTTCTAAATTTTTCTGTAAGTGGCA  750

seq1  ACATGGAATTTTTATAAAGTTTTATAATTACCTCTTGCATTTAGAATAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAATTTTTATAAAGTTTTATAATTACCTCTTGCATTTAGAATAGT  800

seq1  CTTTTTGAGGACCTCTATA-GTTGTAGCATGAACTTGTATGTTTCTGATA  849
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  CTTTTTGAGGACCTCTATAGGTTGTAGCATGAATTTGTATGTTTCTGATA  850

seq1  TTTTAAGACTGAATAATACTTGTATACTTCACAACTTAATTCA-TTCAAC  898
      |||| |||||||||||||||||||||||||||||||| ||||| ||||||
seq2  TTTTTAGACTGAATAATACTTGTATACTTCACAACTT-ATTCATTTCAAC  899

seq1  TGATAAATATGACTTAGTCTTAAGATTTTCTAAATTGTACTACAAACATT  948
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAT-AATATGACTTAGTCTTAAGATTTTCTAAATTGTACTACAAACATT  948

seq1  TACATAAGATAATATGTGGGTAAATCTTTCCTG-TTCTACTTAATGCATT  997
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  TACATAAGAT-ATATGTGGGTAAATCTTTCCTGTTTCTACTTAATGCATT  997

seq1  CTG  1000
      |||
seq2  CTG  1000

seq1: chr1_148601773_148602843
seq2: B6Ng01-106L23.g_68_1110 (reverse)

seq1  AGACCAAAATAATATTAATTAAAGATGAATTTGTCATTAATTGGAGAAAA  50
      ||||| ||||||||     || ||||| |||||||||  ||| |||||||
seq2  AGACC-AAATAATA-----TATAGATG-ATTTGTCAT--ATT-GAGAAAA  40

seq1  ATTGGTGCCAGAAGCAGGAATTGGAAGTGGAGAGTAGAGTTGAGATTGTT  100
      ||  ||| |||||||| ||||  ||||| |||||||||| ||||||   |
seq2  AT--GTG-CAGAAGCA-GAAT--GAAGT-GAGAGTAGAG-TGAGAT--GT  80

seq1  TTAAATAGAGTACCCATTAATGAGAGTATCAAAATTATGTAAAAGATAAT  150
      |||||||||||||||||| ||||||||||||||  ||||| |||||| ||
seq2  TTAAATAGAGTACCCATT-ATGAGAGTATCAAA--TATGT-AAAGAT-AT  125

seq1  GGGCTGTGTCAAATATTTAATAATCTAAGTTATTTTTCCAGTTCTTGTGT  200
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  GGGCTGTGTCAAATATTTAATAATCTAAGTTA-TTTTCCAGTTC-TGTGT  173

seq1  GCCCTTTAGCTTTCTTGTCTGGCTGCTTTCAGTGGGTCTTGTGGTGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTAGCTTTCTTGTCTGGCTGCTTTCAGTGGGTCTTGTGGTGTCAT  223

seq1  GTTGAACGGAAACAGTAAAATAGTAGACGTAAATCTATTTGTCTTAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACGGAAACAGTAAAATAGTAGACGTAAATCTATTTGTCTTAATCA  273

seq1  AGACCTGAGTCTGACAACCATGGGCACTTCCACATATTTTGAATGTTCAA  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGA-CTGAGTCTGACAACCATGGGCACTTCCACATATTTTGAATGTTCAA  322

seq1  AATAATATAAAGTCACAAAAAGACTAAAAAATATCATATGAGATATGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATAAAGTCACAAAAAGACTAAAAAATATCATATGAGATATGGTT  372

seq1  TATCACATAAAAGAAAAAATATATTTTAAAAATAACCTAAAGCACAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACATAAAAGAAAAAATATATTTTAAAAATAACCTAAAGCACAGAAA  422

seq1  ATAGAAACAAATATCTACAAATAGTAAAAAAAAAAAACATAATGAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAACAAATATCTACAAATAGTAAAAAAAAAAAACATAATGAACAAG  472

seq1  TTCTATACTGCAAATAAAAGAATGAATAATAAAGATTACTCTGAAAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATACTGCAAATAAAAGAATGAATAATAAAGATTACTCTGAAAATAG  522

seq1  AAGAAAATTTTAGAAAATGATCAGAAAATTGTATAATATTTAGAATATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATTTTAGAAAATGATCAGAAAATTGTATAATATTTAGAATATAA  572

seq1  GGAACTTTAAAATTCCAAACAAAAATTGAAAGAAATTAACCTGAATCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTTAAAATTCCAAACAAAAATTGAAAGAAATTAACCTGAATCATT  622

seq1  TTTTCATAAAAATTACATATAAATGGACAAAATTATTTTTTAAAAAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAAAAATTACATATAAATGGACAAAATTATTTTTTAAAAAATCC  672

seq1  TCAAATATTCTAATCATGAAGGCAATGAAAACTAAAGCATCAAGACTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATTCTAATCATGAAGGCAATGAAAACTAAAGCATCAAGACTGTA  722

seq1  CTTTACTCAATAACAATAGCTGCAGTGGTCCAGCTAAAAATAGGTACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTCAATAACAATAGCTGCAGTGGTCCAGCTAAAAATAGGTACTTC  772

seq1  CAACCCTGTGCTGTGAACTTTTGCATACAAAGGAGATAGGAAATAGCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTGTGCTGTGAACTTTTGCATACAAAGGAGATAGGAAATAGCAAC  822

seq1  TCTATAACAGAAGACAAAATGGCAGTTAAAGTGAAAGCTTAAAAGTGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAACAGAAGACAAAATGGCAGTTAAAGTGAAAGCTTAAAAGTGAAT  872

seq1  ACTCCATGGAGTTAAGAAACCAGCAGAGTCCTCATACATTATCTCAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATGGAGTTAAGAAACCAGCAGAGTCCTCATACATTATCTCAAATA  922

seq1  ATGAAATTCTATAATTTTCAACACATCTGGAAATCAAGAACATTTTGTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTCTATAATTTTCAACACATCTGGAAATCAAGAACATTTTGTTG  972

seq1  AGAGAAATAAGAAGCACAGAAAGACAAATTCCATATGATTCTATTCACAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATAAGAAGCACAGAAAGACAAATTCCATATGATTCTATTCACAA  1022

seq1  AATATATTTCAACAAGAATTC  1071
      |||||||||||||||||||||
seq2  AATATATTTCAACAAGAATTC  1043