BAC Information

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BAC

Clone NameB6Ng01-106M15
Chromosome1 (Build37)
Map Location 59,699,317 - 59,901,812
singlet/doubletdoublet
Overlap geneSumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2
Upstream geneAls2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973
Downstream geneAls2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106M15.bB6Ng01-106M15.g
ACCDH914431DH914432
length1,165532
definitionDH914431|Mus musculus domesticus DNA, BAC clone: B6Ng01-106M15, 5' end.DH914432|Mus musculus domesticus DNA, BAC clone: B6Ng01-106M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,699,317 - 59,700,492)(59,901,281 - 59,901,812)
sequence
gaattcattggaactccctaaaaaaaggaaaaagaaagtttgtataaaaa
tcttaggttattagtaactatgataaaaccataaaagaaaaagaaacagc
aggaaacatgaaaggctttaggaaatctcatgttccaagtgctactttat
agacagtcatgatgttctttgcagagatactgaaggttggttatctccac
atcttcattttacaactagggaacgtgaggcctgaagataagctaagaat
ttcagctcaaaataattgataagcctattttctcaaccacctctgtgttc
attttctccttatgtctgagctagcataaaagaaaataaggacctgaata
tgctttctagcttctaactatacaagcaaaactggttttaaacattaaat
tcaaagaatttggtaatgcaaaagagatagctagttaaggcacagtaata
tgtgtgtatgcacacacacataccaggttaagtctaaatgctaccaaaga
tgtttatatttgttaaccattttaatatgacagctaaaggggagatgatt
ctttaaaagaaagtaactttacaaggaagtatgaatcaagaatgatctat
ttaagggctaaagaaatagctcagtggttaagaggattggctgttctttc
agaggactcaggttcaattcccagcactcacatggcagctatcttaatcc
cagtcctgagggaaatccaatgcctacttccagcatctgagggcattatg
gacataatgcacagacatacaggcaggtaaaacaccatgagtaaaatcta
attaaaacaacaacaacaataaaactaaaacttttatctgtggggtttaa
acactgtacctgaaacaaaaccacaaagaaattaaaatataccaagtgtg
atgatacccagcacccaggaggcaagggtaaaaggatctcttgagttcca
ggctagcttggtcgacatagtgagtccaggacagctagggctatgtagag
agactctgtctcaaaacaacaattcaaccttggttttctctttttttgtt
ttttaacttgcttttagtttatgaggcaggatttccagattcatacaact
cagttggccttaaatttcttactggatagaagatactgacctctttgaca
cgtgtgggattacag
gaattcagtgaccacgtgagacagattctaggtaactgaactgagagttg
agcttctgcccaaaagacacgtttgtagtatatgtttaaccaagtcaact
gcttacaaaaacaagtaacaaaaatcatcacgcaagccgggcgtggggag
gcactggggaggcagaggcaggtggatttctgagttcgaggccagcctgg
tctacaaagtgagttccaggacagccagggctattcagagaaaccctgtc
tccaaaaaaaaaaaacaccaaaaaacaaaaaacaaaaacaaaaaaaacaa
aaaacaaaaacaaacaaacaaacaaacccaaaaaacaccacgcagggcta
gagagatactcagtggatgaaagcatactaatcttccagaggacctaagt
gtggttcccggcatgcactgcagatggctcacagctgcctataactccag
ctccaggagcgtcaagacccctttctagtattcacaggcagctgtactca
tgtgtacataccacatgcagaaatgcagaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59699317_59700492
seq2: B6Ng01-106M15.b_46_1210

seq1  GAATTCATTGGAACTCCCTAAAAAAAGGAAAAAGAAAGTTTGTATAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGAACTCCCTAAAAAAAGGAAAAAGAAAGTTTGTATAAAAA  50

seq1  TCTTAGGTTATTAGTAACTATGATAAAACCATAAAAGAAAAAGAAACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGTTATTAGTAACTATGATAAAACCATAAAAGAAAAAGAAACAGC  100

seq1  AGGAAACATGAAAGGCTTTAGGAAATCTCATGTTCCAAGTGCTACTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACATGAAAGGCTTTAGGAAATCTCATGTTCCAAGTGCTACTTTAT  150

seq1  AGACAGTCATGATGTTCTTTGCAGAGATACTGAAGGTTGGTTATCTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTCATGATGTTCTTTGCAGAGATACTGAAGGTTGGTTATCTCCAC  200

seq1  ATCTTCATTTTACAACTAGGGAACGTGAGGCCTGAAGATAAGCTAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATTTTACAACTAGGGAACGTGAGGCCTGAAGATAAGCTAAGAAT  250

seq1  TTCAGCTCAAAATAATTGATAAGCCTATTTTCTCAACCACCTCTGTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCAAAATAATTGATAAGCCTATTTTCTCAACCACCTCTGTGTTC  300

seq1  ATTTTCTCCTTATGTCTGAGCTAGCATAAAAGAAAATAAGGACCTGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCTTATGTCTGAGCTAGCATAAAAGAAAATAAGGACCTGAATA  350

seq1  TGCTTTCTAGCTTCTAACTATACAAGCAAAACTGGTTTTAAACATTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTAGCTTCTAACTATACAAGCAAAACTGGTTTTAAACATTAAAT  400

seq1  TCAAAGAATTTGGTAATGCAAAAGAGATAGCTAGTTAAGGCACAGTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAATTTGGTAATGCAAAAGAGATAGCTAGTTAAGGCACAGTAATA  450

seq1  TGTGTGTATGCACACACACATACCAGGTTAAGTCTAAATGCTACCAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGCACACACACATACCAGGTTAAGTCTAAATGCTACCAAAGA  500

seq1  TGTTTATATTTGTTAACCATTTTAATATGACAGCTAAAGGGGAGATGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATATTTGTTAACCATTTTAATATGACAGCTAAAGGGGAGATGATT  550

seq1  CTTTAAAAGAAAGTAACTTTACAAGGAAGTATGAATCAAGAATGATCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAGAAAGTAACTTTACAAGGAAGTATGAATCAAGAATGATCTAT  600

seq1  TTAAGGGCTAAAGAAATAGCTCAGTGGTTAAGAGGATTGGCTGTTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGCTAAAGAAATAGCTCAGTGGTTAAGAGGATTGGCTGTTCTTTC  650

seq1  AGAGGACTCAGGTTCAATTCCCAGCACTCACATGGCAGCTATCTTAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACTCAGGTTCAATTCCCAGCACTCACATGGCAGCTATCTTAATCC  700

seq1  CAGTCCTGAGGGAAATCCAATGCCTACTTCCAGCATCTGAGGGCATTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTGAGGGAAATCCAATGCCTACTTCCAGCATCTGAGGGCATTATG  750

seq1  GACATAATGCACAGACATACAGGCAGGTAAAACACCATGAGTAAAATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAATGCACAGACATACAGGCAGGTAAAACACCATGAGTAAAATCTA  800

seq1  ATTAAAACAACAACAACAATAAAACTAAAACTTTTATCTGTGGGGTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACAACAACAACAATAAAACTAAAACTTTTATCTGTGGGGTTTAA  850

seq1  ACACTGTACCTGAAACAAAACCACAAAGAAATTAAAATATACCAAGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTACCTGAAACAAAACCACAAAGAAATTAAAATATACCAAGTGTG  900

seq1  ATGATACCCAGCACCCAGGAGGCAAGGGTAAAAGGATCTCTTGAGTTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCCAGCACCCAGGAGGCAAGGGTAAAAGGATCTCTTGAGTTCCA  950

seq1  GGCTAGCTTGGTCGACATAGTGAGTTCCAGGACAGCTAGGGCTATGTAGA  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGCTAGCTTGGTCGACATAGTGAG-TCCAGGACAGCTAGGGCTATGTAGA  999

seq1  GAGACTCTGTCTCAAAACAAACAATTCAACCTTGGTTATCTCTATGTATT  1050
      |||||||||||||||||| |||||||||||||||||| ||||| | | ||
seq2  GAGACTCTGTCTCAAAAC-AACAATTCAACCTTGGTTTTCTCT-TTTTTT  1047

seq1  GTTTTTTTAACTTGCTTTTAGTTTTATGAGGCAGGATTTCCAGGATTTCA  1100
      | ||||||||||||||||||| |||||||||||||||||||||   ||||
seq2  G-TTTTTTAACTTGCTTTTAG-TTTATGAGGCAGGATTTCCAG--ATTCA  1093

seq1  TACAACTCAGGTTGGCCTCAAATTTCTTACTGAGTAGAAGATAACCTTGA  1150
      ||||||||| |||||||| |||||||||||||  |||||||||    |||
seq2  TACAACTCA-GTTGGCCTTAAATTTCTTACTGGATAGAAGATA---CTGA  1139

seq1  CCTCTTGAACA-GTGTTGGGATTACAG  1176
      ||||||  ||| ||| |||||||||||
seq2  CCTCTTTGACACGTG-TGGGATTACAG  1165

seq1: chr1_59901281_59901812
seq2: B6Ng01-106M15.g_69_600 (reverse)

seq1  GTTTCTGCATTTCTGCATGTGGTATGTACACATGAGTACAGCTGCCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCATTTCTGCATGTGGTATGTACACATGAGTACAGCTGCCTGTG  50

seq1  AATACTAGAAAGGGGTCTTGACGCTCCTGGAGCTGGAGTTATAGGCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAGAAAGGGGTCTTGACGCTCCTGGAGCTGGAGTTATAGGCAGCT  100

seq1  GTGAGCCATCTGCAGTGCATGCCGGGAACCACACTTAGGTCCTCTGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCATCTGCAGTGCATGCCGGGAACCACACTTAGGTCCTCTGGAAG  150

seq1  ATTAGTATGCTTTCATCCACTGAGTATCTCTCTAGCCCTGCGTGGTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATGCTTTCATCCACTGAGTATCTCTCTAGCCCTGCGTGGTGTTT  200

seq1  TTTGGGTTTGTTTGTTTGTTTGTTTTTGTTTTTTGTTTTTTTTGTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTGTTTGTTTGTTTGTTTTTGTTTTTTGTTTTTTTTGTTTTTG  250

seq1  TTTTTTGTTTTTTGGTGTTTTTTTTTTTTGGAGACAGGGTTTCTCTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTTGGTGTTTTTTTTTTTTGGAGACAGGGTTTCTCTGAAT  300

seq1  AGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACT  350

seq1  CAGAAATCCACCTGCCTCTGCCTCCCCAGTGCCTCCCCACGCCCGGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCACCTGCCTCTGCCTCCCCAGTGCCTCCCCACGCCCGGCTTG  400

seq1  CGTGATGATTTTTGTTACTTGTTTTTGTAAGCAGTTGACTTGGTTAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATGATTTTTGTTACTTGTTTTTGTAAGCAGTTGACTTGGTTAAACA  450

seq1  TATACTACAAACGTGTCTTTTGGGCAGAAGCTCAACTCTCAGTTCAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTACAAACGTGTCTTTTGGGCAGAAGCTCAACTCTCAGTTCAGTTA  500

seq1  CCTAGAATCTGTCTCACGTGGTCACTGAATTC  532
      ||||||||||||||||||||||||||||||||
seq2  CCTAGAATCTGTCTCACGTGGTCACTGAATTC  532