BAC Information

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BAC

Clone NameB6Ng01-106N06
Chromosome6 (Build37)1 (Build37)
Map Location 139,205,932 - 139,206,85861,720,611 - 61,721,252
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLmo3, Igbp1b, EG668196
Downstream geneEG632971, LOC100043898, Pik3c2g, Plcz1, Capza3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106N06.bB6Ng01-106N06.g
ACCDH914457DH914458
length927674
definitionDH914457|Mus musculus domesticus DNA, BAC clone: B6Ng01-106N06, 5' end.DH914458|Mus musculus domesticus DNA, BAC clone: B6Ng01-106N06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(139,205,932 - 139,206,858)(61,720,611 - 61,721,252)
sequence
gaattctgttacacagaagaacaaggaaaaataattactcccattagaag
actccaaaatctttttatagactctaatcagcagtatgatttacaattga
attgccactcagggacaaggaacattgataaaaattatattcttcactgc
aataaatgacaccagagatgaccctttgccagcacattcctctcttacat
tgttctaagaaccatcatcatgcttttcctgcttgctataaccaaatcgc
ctgcttccataaacaagaaaatatgccccacattgtgtgtgtgcaagtgg
gtgtgtttcaaacaacaattaacagaattcatgttctccatatcaaggaa
atgtactgtttttccttaaatgaaaatgaaaatggaagcaaaacactact
gcatataagtagaaactttattatttgattatggtgaaattgaaaaacca
tttgtatctatccatatatgcaactttcattgtttctacagagctgttaa
caagtctcaatcagtgctttcttggttatgttaattctgtgggagcaaaa
attaaaaataaatggtgctcaacaaagaagagccagtgttttaattcatt
gcttaaagaaactaggtgtccattcaggtaacgttcgttagttgtattaa
tatttctttgatactactgaggaactcagtttatcatgtagattgtgtgc
atttgagtagaacgatgtcataggcagtttttgacttttgctgacatgtt
ttacttgtagtcctgaaaacttttgcaacagtggtcatgatttacatgtg
caaactgttttttcatgcactctagagtatagaaagcctcaaagatcaaa
gttaaaactagacaaagtaaatatcctttcgttcttcagcatgggtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgag
gaattcctgatctttccaagactttgatcatgaatgggtgttggatcttg
tcaaatgctttttctgcacctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
accctgtatccctggaataaaacctacttggtcaggatggatgattgctt
taatgtgttcttggattcagttagcgagaattttattgagtatttttgca
tcgatattcataagagaaattggtctgaagttctctatctttgttggagc
tttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttgg
gtagagtaccttctacttctattttgtgaaatagtttgtgcagaactaga
attatatcttctttgaaggtctgatagaactctgcactaaacccgtctgg
tcctgggctttttttggctgggagactattaataactgcttctatttttt
aggcgatatggaactgtttagatggtcaacttgatcctgattcaactttg
gtacctggtatctgtccagaaatttgtccatttcgtcgaggttttccaat
tttgatgagtatagccttttgtagaaggatctgatggtgttttggatttc
ttcaggatctgttgttatgtctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_139205932_139206858
seq2: B6Ng01-106N06.b_45_971

seq1  GAATTCTGTTACACAGAAGAACAAGGAAAAATAATTACTCCCATTAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTACACAGAAGAACAAGGAAAAATAATTACTCCCATTAGAAG  50

seq1  ACTCCAAAATCTTTTTATAGACTCTAATCAGCAGTATGATTTACAATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAAATCTTTTTATAGACTCTAATCAGCAGTATGATTTACAATTGA  100

seq1  ATTGCCACTCAGGGACAAGGAACATTGATAAAAATTATATTCTTCACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCACTCAGGGACAAGGAACATTGATAAAAATTATATTCTTCACTGC  150

seq1  AATAAATGACACCAGAGATGACCCTTTGCCAGCACATTCCTCTCTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGACACCAGAGATGACCCTTTGCCAGCACATTCCTCTCTTACAT  200

seq1  TGTTCTAAGAACCATCATCATGCTTTTCCTGCTTGCTATAACCAAATCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAAGAACCATCATCATGCTTTTCCTGCTTGCTATAACCAAATCGC  250

seq1  CTGCTTCCATAAACAAGAAAATATGCCCCACATTGTGTGTGTGCAAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCATAAACAAGAAAATATGCCCCACATTGTGTGTGTGCAAGTGG  300

seq1  GTGTGTTTCAAACAACAATTAACAGAATTCATGTTCTCCATATCAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTCAAACAACAATTAACAGAATTCATGTTCTCCATATCAAGGAA  350

seq1  ATGTACTGTTTTTCCTTAAATGAAAATGAAAATGGAAGCAAAACACTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTGTTTTTCCTTAAATGAAAATGAAAATGGAAGCAAAACACTACT  400

seq1  GCATATAAGTAGAAACTTTATTATTTGATTATGGTGAAATTGAAAAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAAGTAGAAACTTTATTATTTGATTATGGTGAAATTGAAAAACCA  450

seq1  TTTGTATCTATCCATATATGCAACTTTCATTGTTTCTACAGAGCTGTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATCTATCCATATATGCAACTTTCATTGTTTCTACAGAGCTGTTAA  500

seq1  CAAGTCTCAATCAGTGCTTTCTTGGTTATGTTAATTCTGTGGGAGCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTCAATCAGTGCTTTCTTGGTTATGTTAATTCTGTGGGAGCAAAA  550

seq1  ATTAAAAATAAATGGTGCTCAACAAAGAAGAGCCAGTGTTTTAATTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATAAATGGTGCTCAACAAAGAAGAGCCAGTGTTTTAATTCATT  600

seq1  GCTTAAAGAAACTAGGTGTCCATTCAGGTAACGTTCGTTAGTTGTATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAGAAACTAGGTGTCCATTCAGGTAACGTTCGTTAGTTGTATTAA  650

seq1  TATTTCTTTGATACTACTGAGGAACTCAGTTTATCATGTAGATTGTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTGATACTACTGAGGAACTCAGTTTATCATGTAGATTGTGTGC  700

seq1  ATTTGAGTAGAACGATGTCATAGGCAGTTTTTGACTTTTGCTGACATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTAGAACGATGTCATAGGCAGTTTTTGACTTTTGCTGACATGTT  750

seq1  TTACTTGTAGTCCTGAAAACTTTTGCAACAGTGGTCATGATTTACATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGTAGTCCTGAAAACTTTTGCAACAGTGGTCATGATTTACATGTG  800

seq1  CAAACTGTTTTTTCATGCACTCTAGAGTATAGAAAGCCTCAAAGATCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGTTTTTTCATGCACTCTAGAGTATAGAAAGCCTCAAAGATCAAA  850

seq1  GTTAAAACTAGACAAAGTAAATATCCTTTCGTTCTTCAGCATGGGTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAACTAGACAAAGTAAATATCCTTTCGTTCTTCAGCATGGGTGTGT  900

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTG  927
      ||||||||||||||||||||||||| |
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGAG  927

seq1: chr1_61720611_61721252
seq2: B6Ng01-106N06.g_66_705 (reverse)

seq1  ACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAAC  50
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  ACACCATCAGATCCTTCTACAAAAGGCTATACTCATCAAAATTGGAAAAC  50

seq1  CTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAA  100
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAA  100

seq1  TCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAG  150
      |||||||||||||||||||||||||||| ||||||| |||||| ||||||
seq2  TCAGGATCAAGTTGACCATCTAAACAGTTCCATATCGCCTAAA-AAATAG  149

seq1  AAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGG  200
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  AAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGG  199

seq1  TTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCT  250
      |||||||||||||||||||||||||||||||||||| |||||| | ||||
seq2  TTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATATAATTCTAGTTCT  249

seq1  GCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCAT  299

seq1  TTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACA  350
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGCTCCAACA  349

seq1  AAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAAT  399

seq1  CCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCA  450
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTCAATAAAATTCTCGCTAACTGAATCCAAGAACACATTAAAGCAATCA  449

seq1  TCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAAT  500
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  TCCATCCTGACCAAGTAGGTTTTATTCCAGGGATACAGGG-TGGTTTAAT  498

seq1  ATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAA  548

seq1  AAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCC  600
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAACCACATGATCATCTCGTTAGGTGCAGAAAAAGCATTTGACAAGATCC  598

seq1  AACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTC  642
      |||||||||||||||| ||||| |||||||||||||||||||
seq2  AACACCCATTCATGATCAAAGTCTTGGAAAGATCAGGAATTC  640