BAC Information

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BAC

Clone NameB6Ng01-106N11
Chromosome1 (Build37)
Map Location 165,964,352 - 166,098,884
singlet/doubletdoublet
Overlap geneSele, Sell, Selp, F5
Upstream gene4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik
Downstream geneSlc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106N11.bB6Ng01-106N11.g
ACCDH914467DH914468
length1,0971,100
definitionDH914467|Mus musculus domesticus DNA, BAC clone: B6Ng01-106N11, 5' end.DH914468|Mus musculus domesticus DNA, BAC clone: B6Ng01-106N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,964,352 - 165,965,449)(166,097,768 - 166,098,884)
sequence
gaattcttgaatgaatagtcctaagaccaacattctgaacaaacaatcac
aaactctgaaccctgaagacaaaccctaatcagcaaataatggagcaatg
tccatctttggaagagaaaatgctaccatggagagaaaaaactgtgctgg
atcttatttagtgtttcatagatttttttttttttaacgagagaaaactg
aaagctaaaattaagaatcttgctaatgactagatcaaatcactgaattg
atatgataaagtcagtaagttcaaagttagctcaacaggaaatcatgtga
tatggagagcaaggagactaggtacagtaggaaggaaaactttcacacac
agtggaactcataatgtggagttaaagtatgaagaaatgatttttctttc
ctcactgagcataccttgtgtggtggtttgaacatgcttgacccagagaa
agtagcactattaggagttgtggccttgttggagtaggtgtggccttgtt
ggaggaagtgcatcattgtgggggtgggtcttgaagctctgcccagtgtg
aaagagaccctcctcctgaatgtttgcagaagagacagtctctgtaagct
gcagtcagatcaatatgcagaactctcagctccttttccataaccatgtc
tacctggacactgccatgcttcctgccattgtgataatagactgagcctc
tgaaactgtgagctgggcccaataaaatgttttacttcataagagttggc
cttggtcatggtgtctcttcacaacaataaaactccagctaagatacctt
gtattttctgtattccgaatacatgtgttttgcttgtactgagtgttgta
ccttttaggatgagtcaattatacagcccatagtctttctttcatgagct
ttcctgtacccactggccttaaagtttatttcctcagcattttttttgtt
aattgtaagttttttaaatgcatgcattatgcagatcataaaacacacat
acaattatgattatttctacatattgtattttacacttacttcaagacaa
ggaatgaaatgatcaggactcaagccaattatatgtatcttttccct
gaattctgtgtcacgcatgcaggtactgaaaaggttgatatggcaacaca
aatggatatctaaaagaaaaattccacttctcaatataatgtacgatagc
gttttgtatacttgaatggtaattttaattgtttaaagggtgaattgtgg
gcaccaggaaacatatagcaaacaatatagatttgtacatgggatgaaag
tattctgtgagtacacacaggactatcattaaaagtattagaagataact
tatcaatgtttttattcttttcattgcacactattttttctccagaataa
aacacaagtgctatatttctcattctgtaacctacacaatatgaaataaa
atagaaacagccattttagaggaagcatttttgaagtgtgttttttttta
aataaatcttattttgactttgtaatccaaataaagttaaaattctaaat
tggaaagaagagaaatggacaggatgggttgtgacagaacacacaggtcc
tcgtccatcctgtggcagagtaaacttcttacacaagaggtcttcttcat
tttgtatctgctcagttctgttcagttctttcttgctcagtccagtcaac
tttataatgagtttatccctgtcatgctgtatgaattattttcagagaga
ccccccagtacatttttaagtgctaagtggtgcatgcaagcttcagggaa
aagtgaagttctgtaaggttctgttatccttcgggctactcacgcattag
ctgttattactcttgtgtgaatttccccctcctgtttattaaacacagtg
aatgcccctgtgcatgcaaagaaacagaacagtcatttggaagctataaa
ttgaacaatgggcaaattaatgctggttttgtataatgaatttgatttcg
ctgcgtagacatatgagggctttttaaatggaaaatgctgcttttgtgct
ttatggagactttaaataatcatataatttgttcatactggtaaaaataa
actgagttaagtttgaatgtatgaaattctaagactactttttttttgat
ttagtttttaggcattatgatgagaacatacataattcaactttttctga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_165964352_165965449
seq2: B6Ng01-106N11.b_47_1143

seq1  GAATTCTTGAATGAATAGTCCTAAGACCAACATTCTGAACAAACAATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAATGAATAGTCCTAAGACCAACATTCTGAACAAACAATCAC  50

seq1  AAACTCTGAACCCTGAAGACAAACCCTAATCAGCAAATAATGGAGCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGAACCCTGAAGACAAACCCTAATCAGCAAATAATGGAGCAATG  100

seq1  TCCATCTTTGGAAGAGAAAATGCTACCATGGAGAGAAAAAACTGTGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTTGGAAGAGAAAATGCTACCATGGAGAGAAAAAACTGTGCTGG  150

seq1  ATCTTATTTAGTGTTTCATAGATTTTTTTTTTTTTAACGAGAGAAAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATTTAGTGTTTCATAGATTTTTTTTTTTTTAACGAGAGAAAACTG  200

seq1  AAAGCTAAAATTAAGAATCTTGCTAATGACTAGATCAAATCACTGAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAAATTAAGAATCTTGCTAATGACTAGATCAAATCACTGAATTG  250

seq1  ATATGATAAAGTCAGTAAGTTCAAAGTTAGCTCAACAGGAAATCATGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATAAAGTCAGTAAGTTCAAAGTTAGCTCAACAGGAAATCATGTGA  300

seq1  TATGGAGAGCAAGGAGACTAGGTACAGTAGGAAGGAAAACTTTCACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGAGCAAGGAGACTAGGTACAGTAGGAAGGAAAACTTTCACACAC  350

seq1  AGTGGAACTCATAATGTGGAGTTAAAGTATGAAGAAATGATTTTTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAACTCATAATGTGGAGTTAAAGTATGAAGAAATGATTTTTCTTTC  400

seq1  CTCACTGAGCATACCTTGTGTGGTGGTTTGAACATGCTTGACCCAGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGAGCATACCTTGTGTGGTGGTTTGAACATGCTTGACCCAGAGAA  450

seq1  AGTAGCACTATTAGGAGTTGTGGCCTTGTTGGAGTAGGTGTGGCCTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCACTATTAGGAGTTGTGGCCTTGTTGGAGTAGGTGTGGCCTTGTT  500

seq1  GGAGGAAGTGCATCATTGTGGGGGTGGGTCTTGAAGCTCTGCCCAGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGTGCATCATTGTGGGGGTGGGTCTTGAAGCTCTGCCCAGTGTG  550

seq1  AAAGAGACCCTCCTCCTGAATGTTTGCAGAAGAGACAGTCTCTGTAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACCCTCCTCCTGAATGTTTGCAGAAGAGACAGTCTCTGTAAGCT  600

seq1  GCAGTCAGATCAATATGCAGAACTCTCAGCTCCTTTTCCATAACCATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGATCAATATGCAGAACTCTCAGCTCCTTTTCCATAACCATGTC  650

seq1  TACCTGGACACTGCCATGCTTCCTGCCATTGTGATAATAGACTGAGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGACACTGCCATGCTTCCTGCCATTGTGATAATAGACTGAGCCTC  700

seq1  TGAAACTGTGAGCTGGGCCCAATAAAATGTTTTACTTCATAAGAGTTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGTGAGCTGGGCCCAATAAAATGTTTTACTTCATAAGAGTTGGC  750

seq1  CTTGGTCATGGTGTCTCTTCACAACAATAAAACTCCAGCTAAGATACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCATGGTGTCTCTTCACAACAATAAAACTCCAGCTAAGATACCTT  800

seq1  GTATTTTCTGTATTCCGAATACATGTGTTTTGCTTGTACTGAGTGTTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCTGTATTCCGAATACATGTGTTTTGCTTGTACTGAGTGTTGTA  850

seq1  CCTTTTAGGATGAGTC-AGTATACAGCCCATAGTCTTCTTTCCATGAGCT  899
      |||||||||||||||| | ||||||||||||||||||  || ||||||||
seq2  CCTTTTAGGATGAGTCAATTATACAGCCCATAGTCTTTCTTTCATGAGCT  900

seq1  CTCCTGTACCCACTGGCCTTAAAAGTTTATTTCCTCAGCA-TTTTTTTGT  948
       ||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  TTCCTGTACCCACTGGCCTT-AAAGTTTATTTCCTCAGCATTTTTTTTGT  949

seq1  TAATTGTAAGTTTTATCAAATGCATGCA-TATGCAGATCATAAAACACAC  997
      |||||||||||||| | ||||||||||| |||||||||||||||||||||
seq2  TAATTGTAAGTTTT-TTAAATGCATGCATTATGCAGATCATAAAACACAC  998

seq1  ATACAATTATGATTA-TTCTACAATAATTGTATTTTACACTTACTTCAAG  1046
      ||||||||||||||| |||||||   ||||||||||||||||||||||||
seq2  ATACAATTATGATTATTTCTACA--TATTGTATTTTACACTTACTTCAAG  1046

seq1  ACAAGGAATGAAATGATCAAGACCTCAAGCCAAATATATGTATCTATTCC  1096
      ||||||||||||||||||| || |||||||||| ||||||||||| ||||
seq2  ACAAGGAATGAAATGATCAGGA-CTCAAGCCAATTATATGTATCTTTTCC  1095

seq1  CT  1098
      ||
seq2  CT  1097

seq1: chr1_166097768_166098884
seq2: B6Ng01-106N11.g_70_1169 (reverse)

seq1  TCAG-AAAAGTTGAAATTATGTATTGTTTCTCATCATAATGCTATAAAAC  49
      |||| |||||||| ||||||||||   |||||||||||||||  ||||| 
seq2  TCAGAAAAAGTTG-AATTATGTAT--GTTCTCATCATAATGC-CTAAAAA  46

seq1  TTAAATCAAAAAAAAAAGTTAGTTCTTTAGAATTTTCATAACATTCAAAC  99
       |||||||||||||||   ||||   |||||| |||||| ||||||||| 
seq2  CTAAATCAAAAAAAAA--GTAGT--CTTAGAA-TTTCAT-ACATTCAAA-  89

seq1  CTTAACTCAGTTTATTTTTTACCAAGTATGAAACAAATTATAATGATTAA  149
      |||||||||||||| |||||||| |||||| |||||||||| ||||||| 
seq2  CTTAACTCAGTTTA-TTTTTACC-AGTATG-AACAAATTAT-ATGATTA-  134

seq1  TATAAAAGTTCTCATAAAGCACAAAAGCAGCATTTTCCATTTTAAAAAGC  199
        | |||||   ||||||||||||||||||||||||||| ||||||||||
seq2  -TTTAAAGTCTCCATAAAGCACAAAAGCAGCATTTTCCA-TTTAAAAAGC  182

seq1  CCTCATATGTCTACGCAGCGAAATCAAATTCATTATACAAAACCAGCATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATATGTCTACGCAGCGAAATCAAATTCATTATACAAAACCAGCATT  232

seq1  AATTTGCCCATTGTTCAATTTATAGCTTCCAAATGACTGTTCTGTTTCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCCCATTGTTCAATTTATAGCTTCCAAATGACTGTTCTGTTTCTT  282

seq1  TGCATGCACAGGGGCATTCACTGTGTTTAATAAACAGGAGGGGGAAATTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCACAGGGGCATTCACTGTGTTTAATAAACAGGAGGGGGAAATTC  332

seq1  ACACAAGAGTAATAACAGCTAATGCGTGAGTAGCCCGAAGGATAACAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGAGTAATAACAGCTAATGCGTGAGTAGCCCGAAGGATAACAGAA  382

seq1  CCTTACAGAACTTCACTTTTCCCTGAAGCTTGCATGCACCACTTAGCACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAGAACTTCACTTTTCCCTGAAGCTTGCATGCACCACTTAGCACT  432

seq1  TAAAAATGTACTGGGGGGTCTCTCTGAAAATAATTCATACAGCATGACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGTACTGGGGGGTCTCTCTGAAAATAATTCATACAGCATGACAG  482

seq1  GGATAAACTCATTATAAAGTTGACTGGACTGAGCAAGAAAGAACTGAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAACTCATTATAAAGTTGACTGGACTGAGCAAGAAAGAACTGAACA  532

seq1  GAACTGAGCAGATACAAAATGAAGAAGACCTCTTGTGTAAGAAGTTTACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAGCAGATACAAAATGAAGAAGACCTCTTGTGTAAGAAGTTTACT  582

seq1  CTGCCACAGGATGGACGAGGACCTGTGTGTTCTGTCACAACCCATCCTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACAGGATGGACGAGGACCTGTGTGTTCTGTCACAACCCATCCTGT  632

seq1  CCATTTCTCTTCTTTCCAATTTAGAATTTTAACTTTATTTGGATTACAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTCTTCTTTCCAATTTAGAATTTTAACTTTATTTGGATTACAAA  682

seq1  GTCAAAATAAGATTTATTTAAAAAAAAACACACTTCAAAAATGCTTCCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATAAGATTTATTTAAAAAAAAACACACTTCAAAAATGCTTCCTC  732

seq1  TAAAATGGCTGTTTCTATTTTATTTCATATTGTGTAGGTTACAGAATGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGCTGTTTCTATTTTATTTCATATTGTGTAGGTTACAGAATGAG  782

seq1  AAATATAGCACTTGTGTTTTATTCTGGAGAAAAAATAGTGTGCAATGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGCACTTGTGTTTTATTCTGGAGAAAAAATAGTGTGCAATGAAA  832

seq1  AGAATAAAAACATTGATAAGTTATCTTCTAATACTTTTAATGATAGTCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAAACATTGATAAGTTATCTTCTAATACTTTTAATGATAGTCCT  882

seq1  GTGTGTACTCACAGAATACTTTCATCCCATGTACAAATCTATATTGTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACTCACAGAATACTTTCATCCCATGTACAAATCTATATTGTTTG  932

seq1  CTATATGTTTCCTGGTGCCCACAATTCACCCTTTAAACAATTAAAATTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGTTTCCTGGTGCCCACAATTCACCCTTTAAACAATTAAAATTAC  982

seq1  CATTCAAGTATACAAAACGCTATCGTACATTATATTGAGAAGTGGAATTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGTATACAAAACGCTATCGTACATTATATTGAGAAGTGGAATTT  1032

seq1  TTCTTTTAGATATCCATTTGTGTTGCCATATCAACCTTTTCAGTACCTGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAGATATCCATTTGTGTTGCCATATCAACCTTTTCAGTACCTGC  1082

seq1  ATGCGTGACACAGAATTC  1117
      ||||||||||||||||||
seq2  ATGCGTGACACAGAATTC  1100