BAC Information

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BAC

Clone NameB6Ng01-107E16
Chromosome1 (Build37)
Map Location 134,753,897 - 134,937,334
singlet/doubletdoublet
Overlap geneLrrn2, Mdm4, LOC638636
Upstream geneRab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc
Downstream genePik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107E16.bB6Ng01-107E16.g
ACCDH914797DH914798
length6421,085
definitionDH914797|Mus musculus domesticus DNA, BAC clone: B6Ng01-107E16, 5' end.DH914798|Mus musculus domesticus DNA, BAC clone: B6Ng01-107E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,936,694 - 134,937,334)(134,753,897 - 134,754,987)
sequence
gaattcagacagttagactgacagaagcagttgggggctgaggttgtgct
ggtaggggagtgacaggttattattcagaggaaagaaactttgagctttg
aatttgggggactctgatgtacagcatagtgatggtagttaatggtgatg
tattgatctcacattctaactcccccacacaccactaaaagaactggtgg
gaactgggcacacacattaattctggcaaagtgtgaggcgtgtaggagga
atataaatttgacaccagccggtgctacacaatgagaccctgtcttttta
aacatgtatttagttgtgtatgtgactgctctgtcttgtaagacagaaga
gggtatcaggatctcattgtggatggttgtaagccacggtgtggttgctg
ggaattgaacctctagaagagcagccagtgactttgacgctgagccatct
ctccaggctctagtgaaccctatctttaaaaaaaaaaaaaaaaaaaattc
gagctgggtgtggtggcgcaagcctttgatcctaacactcgggaggcaga
ggcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttc
caggacagccaggggtacacagagaatccttgtctcgaaaat
gaattcagacccctgtgcacatggagggacactgttcctaccatgcagaa
ttcagacaaatggcgagtagagggtagaactaaggaaataagcactgcca
gcccagagcacagcccagcatccatcttgccctgggaggaaggcagctga
ggctagctctattgaaggctgctgccaaggagaggccaggagagaagtga
gaggactgaggtgcctgagcactgcagggcacctgcctccctctctccta
cctagcacccacccttgtttccagaactccgtgagcttcttccttagcac
ggaatgctagtctgtccttttcaggagatgggctttttgcctctttctgg
attcttgtctgaagagtctccagacctgtccttagacagcattgcccttt
ctcctgtgcctccctgtatactcttccctccctcatagtacagagatgtt
ccttttgcccaagttttctaagaggaaaggttgccttggctgtccttcca
gactccccacctcacccccacacacacactggacagatactgcttggtga
cacttcgaatcaggtgacattgttataatggaatccaaatcagtgctgcc
tccagtgggaagctataaatgcctcatactttacacctcatacagacacc
actgagacctacacttatgacagcctttgaggtggaaggttttttttgtt
ctggtgggggcgacatgtctcttgctccaagagagttcctagaactctgt
ggacttatgtctcttcacagcaatgaaacccaaactaaaacaccagccat
ttttcaaactctttcttgtaatgagaaatgtggccccaggaaacccacag
gccaaatcaccctacacagaaaggaaagccctgtacctctgctcagaggc
agcagggttggcaatgtctgggtaaggatgcccatccccacagacagata
aatcttgtttggggagtgacaggatcagcttgggaccaggtctgaattag
gagatggcagtctgtgttgacagaacaagcactggctcaggctgctgagg
agtagacactaagcccgctgggtcatagactccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_134936694_134937334
seq2: B6Ng01-107E16.b_40_680 (reverse)

seq1  TTTTCGAGACAGGGCTTCTCTGTGTACCCCTGGCTGTCCTGGAACTCACT  50
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  TTTTCGAGACAAGGATTCTCTGTGTACCCCTGGCTGTCCTGGAACTCACT  50

seq1  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC  100

seq1  CGAGTGTTAGGATCAAAGGCTTGCGCCACCACACCCAGCTCGAATTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGTTAGGATCAAAGGCTTGCGCCACCACACCCAGCTCGAATTTTTT  150

seq1  TTTTTTTTTTTTTTAAAGATAGGGTTCACTAGAGCCTGGAGAGATGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTAAAGATAGGGTTCACTAGAGCCTGGAGAGATGGCTC  200

seq1  AGCGTCAAAGTCACTGGCTGCTCTTCTAGAGGTTCAATTCCCAGCAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCAAAGTCACTGGCTGCTCTTCTAGAGGTTCAATTCCCAGCAACCA  250

seq1  CACCGTGGCTTACAACCATCCACAATGAGATCCTGATACCCTCTTCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTGGCTTACAACCATCCACAATGAGATCCTGATACCCTCTTCTGTC  300

seq1  TTACAAGACAGAGCAGTCACATACACAACTAAATACATGTTTAAAAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGACAGAGCAGTCACATACACAACTAAATACATGTTTAAAAAGAC  350

seq1  AGGGTCTCATTGTGTAGCACCGGCTGGTGTCAAATTTATATTCCTCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCATTGTGTAGCACCGGCTGGTGTCAAATTTATATTCCTCCTAC  400

seq1  ACGCCTCACACTTTGCCAGAATTAATGTGTGTGCCCAGTTCCCACCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTCACACTTTGCCAGAATTAATGTGTGTGCCCAGTTCCCACCAGTT  450

seq1  CTTTTAGTGGTGTGTGGGGGAGTTAGAATGTGAGATCAATACATCACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGTGGTGTGTGGGGGAGTTAGAATGTGAGATCAATACATCACCAT  500

seq1  TAACTACCATCACTATGCTGTACATCAGAGTCCCCCAAATTCAAAGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACCATCACTATGCTGTACATCAGAGTCCCCCAAATTCAAAGCTCA  550

seq1  AAGTTTCTTTCCTCTGAATAATAACCTGTCACTCCCCTACCAGCACAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTTTCCTCTGAATAATAACCTGTCACTCCCCTACCAGCACAACC  600

seq1  TCAGCCCCCAACTGCTTCTGTCAGTCTAACTGTCTGAATTC  641
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCCAACTGCTTCTGTCAGTCTAACTGTCTGAATTC  641

seq1: chr1_134753897_134754987
seq2: B6Ng01-107E16.g_69_1153

seq1  GAATTCAGACCCCTGTGCACATGGAGGGACACTGTTCCTACCATGCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCCCTGTGCACATGGAGGGACACTGTTCCTACCATGCAGAA  50

seq1  TTCAGACAAATGGCGAGTAGAGGGTAGAACTAAGGAAATAAGCACTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACAAATGGCGAGTAGAGGGTAGAACTAAGGAAATAAGCACTGCCA  100

seq1  GCCCAGAGCACAGCCCAGCATCCATCTTGCCCTGGGAGGAAGGCAGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGCACAGCCCAGCATCCATCTTGCCCTGGGAGGAAGGCAGCTGA  150

seq1  GGCTAGCTCTATTGAAGGCTGCTGCCAAGGAGAGGCCAGGAGAGAAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCTCTATTGAAGGCTGCTGCCAAGGAGAGGCCAGGAGAGAAGTGA  200

seq1  GAGGACTGAGGTGCCTGAGCACTGCAGGGCACCTGCCTCCCTCTCTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTGAGGTGCCTGAGCACTGCAGGGCACCTGCCTCCCTCTCTCCTA  250

seq1  CCTAGCACCCACCCTTGTTTCCAGAACTCCGTGAGCTTCTTCCTTAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACCCACCCTTGTTTCCAGAACTCCGTGAGCTTCTTCCTTAGCAC  300

seq1  GGAATGCTAGTCTGTCCTTTTCAGGAGATGGGCTTTTTGCCTCTTTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCTAGTCTGTCCTTTTCAGGAGATGGGCTTTTTGCCTCTTTCTGG  350

seq1  ATTCTTGTCTGAAGAGTCTCCAGACCTGTCCTTAGACAGCATTGCCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGTCTGAAGAGTCTCCAGACCTGTCCTTAGACAGCATTGCCCTTT  400

seq1  CTCCTGTGCCTCCCTGTATACTCTTCCCTCCCTCATAGTACAGAGATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGCCTCCCTGTATACTCTTCCCTCCCTCATAGTACAGAGATGTT  450

seq1  CCTTTTGCCCAAGTTTTCTAAGAGGAAAGGTTGCCTTGGCTGTCCTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGCCCAAGTTTTCTAAGAGGAAAGGTTGCCTTGGCTGTCCTTCCA  500

seq1  GACTCCCCACCTCACCCCCACACACACACTGGACAGATACTGCTTGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCCACCTCACCCCCACACACACACTGGACAGATACTGCTTGGTGA  550

seq1  CACTTCGAATCAGGTGACATTGTTATAATGGAATCCAAATCAGTGCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCGAATCAGGTGACATTGTTATAATGGAATCCAAATCAGTGCTGCC  600

seq1  TCCAGTGGGAAGCTATAAATGCCTCATACTTTACACCTCATACAGACACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGGAAGCTATAAATGCCTCATACTTTACACCTCATACAGACACC  650

seq1  ACTGAGACCTACACTTATGACAGCCTTTGAGGTGGAAGGTTTTTTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGACCTACACTTATGACAGCCTTTGAGGTGGAAGGTTTTTTTTGTT  700

seq1  CTGGTAGGGGCGACATGTCTCTTGCTCCAAGAGAGTTCCTAGAACTCTGT  750
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGGGGCGACATGTCTCTTGCTCCAAGAGAGTTCCTAGAACTCTGT  750

seq1  GGACTTATGTCTCTTCACAGCAATGAAACCCAAACTAAAACACCAGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTATGTCTCTTCACAGCAATGAAACCCAAACTAAAACACCAGCCAT  800

seq1  TTTTCAAACTCTTTTCTTGTAATGAGAAATGTGGCCCCAGGAAACCCACA  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAACTC-TTTCTTGTAATGAGAAATGTGGCCCCAGGAAACCCACA  849

seq1  GGCCAAATCACCCTACACAG-AAGGAAAGCCCTGTACCTCTGCTCAGAGG  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGCCAAATCACCCTACACAGAAAGGAAAGCCCTGTACCTCTGCTCAGAGG  899

seq1  CAGCAGGGTTGGCAATGTCT-GGTTAGGATGCCCATCCCCACAGACAGAT  948
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  CAGCAGGGTTGGCAATGTCTGGGTAAGGATGCCCATCCCCACAGACAGAT  949

seq1  AGATCTTGTCT-GGGAGTGACAGGATCAGCCATGGGACCAAGTCTGAAAT  997
      | ||||||| | ||||||||||||||||| | |||||||| ||||| |||
seq2  AAATCTTGTTTGGGGAGTGACAGGATCAG-CTTGGGACCAGGTCTG-AAT  997

seq1  AAGGAGATGGCAAGCTGAGCTGGACAGACAAAGCCACTGCTCCAGGCTGC  1047
       |||||||||||  ||| | | ||||||  ||| |||||   ||||||||
seq2  TAGGAGATGGCAGTCTGTG-TTGACAGAACAAG-CACTGGCTCAGGCTGC  1045

seq1  TGAGGAGTTAGACACAGAAGCCCAGCTGGG-CATGTAGACTCCAG  1091
      ||||||| |||||||  |||||| |||||| ||  ||||||||||
seq2  TGAGGAG-TAGACAC-TAAGCCC-GCTGGGTCA--TAGACTCCAG  1085