BAC Information

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BAC

Clone NameB6Ng01-107H07
Chromosome1 (Build37)
Map Location 40,683,608 - 40,807,200
singlet/doubletdoublet
Overlap geneSlc9a4, Slc9a2
Upstream geneCreg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap
Downstream geneMfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107H07.bB6Ng01-107H07.g
ACCDH914921DH914922
length1,259269
definitionDH914921|Mus musculus domesticus DNA, BAC clone: B6Ng01-107H07, 5' end.DH914922|Mus musculus domesticus DNA, BAC clone: B6Ng01-107H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,805,909 - 40,807,200)(40,683,608 - 40,683,876)
sequence
gaattccagatcataaatcccacatagctataaagaaattatttcccccc
aacccccactgcacagactcaacaatcctctagttgttcatcactaaatt
aactctgattgctcagtttaaaacactgagcaataaatttcactgttctc
ttcacatcctaagctgtttccatagaatttcctttcttccttcctctctt
ccttcctctctctttctttctttctttctttctttctttctttctttctt
tctttctttctttctttctaaatgggtctttctactcattttatctagga
ctatgttaactatcccgatgtcaatggaatcctacccagttagcaatgtt
aattaaatatggtagtttatttaacaaaagaaaccgcatggtagggggcc
tcacaacatctatttgatagcactgtcacttctgttttacaggcaacacc
atcaaatatttatcactaagggtaaatgggctctaagcatccccgtactc
ccgcatgtacaaagggatttttatcaggggcattcctgagggcgtgagca
aagaacaatcttgagaaataaaataacatcaccctttacagacagtgata
aattcctaagctccatacccctcccagaaagcaggtcattacacaggcat
ctgtccttcatgagccctttgtgccaccttcatggaaccaagagctaagg
gaaattgacacaatattctggctatcacttctgccatgaataataaagtc
ttctgtctttgaaccatcaggctggtgtcagtacccacttgtttgcctca
cagtctgcacaaggatgagaattacgtcatcgacagagagctgatgggtt
gtttttacatttagttcactcatttgcaggtagcttctggatagatttat
aggattcttgggatcttctacatgactgtagggataactgaataaggact
gaatgatgccaacttctctattattgtttagcctatattttacatgaaat
catgagatcaaactctatgtcagtattgcactgttatacatattccccta
taatacctgagagagagacccacatctacatcctacagctagtaactgag
gctgatagaacatacatgatggagtcaaagagcagaatcagatgcctctt
ttttgctgtgcctcttcaagaaccttacttctaatacacttgaacatgat
tgttgtcaatgataatatatattgggtgagcatatcttgttgaaagtact
caatatcta
catggtggttgaagagacctgtatactctcctttgcctgtggggttcatt
ttgtattgcaattatggggattccccaccttaaaattctgtgtatgtgtg
aggcagatttaaaccaattgaattagaaaatacctacaatgctcctgaga
gattgatgttggcgaagatttcacagaagcatgaccattcttagtgccat
taaactcttcttggaaatggttgagatgtttaaaatgttaagtgtgtgtg
tgtatgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_40805909_40807200
seq2: B6Ng01-107H07.b_38_1296 (reverse)

seq1  TAGATATTTGAGTTCATTTTTTTCAACAAAGTAATGCCTCAACCAATA-A  49
      |||||| |||||| |     ||||||| |||  ||| |||| |||||| |
seq2  TAGATA-TTGAGTAC-----TTTCAAC-AAGATATG-CTCACCCAATATA  42

seq1  TATTATTTATATACAATGTGACAAACAGATCATGTTCTAAAATTGTATTA  99
      ||||||       ||   |||| |||| |||||||||   || |||||||
seq2  TATTAT-------CA--TTGAC-AACA-ATCATGTTC---AAGTGTATTA  78

seq1  GAAGTTAGGGTCTGTGAGGA-GCACAGCAAAAAAGAGGCCAATCTGA-TC  147
      ||||| ||| ||| ||| || ||||||||||||||||||  |||||| ||
seq2  GAAGTAAGGTTCT-TGAAGAGGCACAGCAAAAAAGAGGC--ATCTGATTC  125

seq1  TGCTCTTTTGACCTCATTCCATGTATGTTCTATCAGCCTCAGTTTACCTA  197
      ||||| ||||||  |||  |||||||||||||||||||||||||   |||
seq2  TGCTC-TTTGACTCCAT--CATGTATGTTCTATCAGCCTCAGTT--ACTA  170

seq1  GCTGTAGGATGTAGATTGTGGGTCCTCTCTCTCAGGTATTATAGGGGAAT  247
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  GCTGTAGGATGTAGA-TGTGGGT-CTCTCTCTCAGGTATTATAGGGGAAT  218

seq1  ATGTATAAACAGTGCAATACCTGACATAGAGTTTTGATCTCATGATTTCA  297
      |||||| |||||||||||| ||||||||||| ||||||||||||||||||
seq2  ATGTAT-AACAGTGCAATA-CTGACATAGAG-TTTGATCTCATGATTTCA  265

seq1  TGTAAAATATTAGGCTAAACAATAATAGAGAAGTTGGCATCATTCAGTCC  347
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATA-TAGGCTAAACAATAATAGAGAAGTTGGCATCATTCAGTCC  314

seq1  TTATTCAGTTATCCCTACAGTCATGTAGAAGATCCCAAGAATCCTATAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGTTATCCCTACAGTCATGTAGAAGATCCCAAGAATCCTATAAA  364

seq1  TCTATCCAGAAGCTACCTGCAAATGAGTGAACTAAATGTAAAAACAACCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCAGAAGCTACCTGCAAATGAGTGAACTAAATGTAAAAACAACCC  414

seq1  ATCAGCTCTCTGTCGATGACGTAATTCTCATCCTTGTGCAGACTGTGAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTCTCTGTCGATGACGTAATTCTCATCCTTGTGCAGACTGTGAGG  464

seq1  CAAACAAGTGGGTACTGACACCAGCCTGATGGTTCAAAGACAGAAGACTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGTGGGTACTGACACCAGCCTGATGGTTCAAAGACAGAAGACTT  514

seq1  TATTATTCATGGCAGAAGTGATAGCCAGAATATTGTGTCAATTTCCCTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCATGGCAGAAGTGATAGCCAGAATATTGTGTCAATTTCCCTTA  564

seq1  GCTCTTGGTTCCATGAAGGTGGCACAAAGGGCTCATGAAGGACAGATGCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGGTTCCATGAAGGTGGCACAAAGGGCTCATGAAGGACAGATGCC  614

seq1  TGTGTAATGACCTGCTTTCTGGGAGGGGTATGGAGCTTAGGAATTTATCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAATGACCTGCTTTCTGGGAGGGGTATGGAGCTTAGGAATTTATCA  664

seq1  CTGTCTGTAAAGGGTGATGTTATTTTATTTCTCAAGATTGTTCTTTGCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTAAAGGGTGATGTTATTTTATTTCTCAAGATTGTTCTTTGCTC  714

seq1  ACGCCCTCAGGAATGCCCCTGATAAAAATCCCTTTGTACATGCGGGAGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCTCAGGAATGCCCCTGATAAAAATCCCTTTGTACATGCGGGAGTA  764

seq1  CGGGGATGCTTAGAGCCCATTTACCCTTAGTGATAAATATTTGATGGTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGATGCTTAGAGCCCATTTACCCTTAGTGATAAATATTTGATGGTGT  814

seq1  TGCCTGTAAAACAGAAGTGACAGTGCTATCAAATAGATGTTGTGAGGCCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTAAAACAGAAGTGACAGTGCTATCAAATAGATGTTGTGAGGCCC  864

seq1  CCTACCATGCGGTTTCTTTTGTTAAATAAACTACCATATTTAATTAACAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCATGCGGTTTCTTTTGTTAAATAAACTACCATATTTAATTAACAT  914

seq1  TGCTAACTGGGTAGGATTCCATTGACATCGGGATAGTTAACATAGTCCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACTGGGTAGGATTCCATTGACATCGGGATAGTTAACATAGTCCTA  964

seq1  GATAAAATGAGTAGAAAGACCCATTTAGAAAGAAAGAAAGAAAGAAAGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATGAGTAGAAAGACCCATTTAGAAAGAAAGAAAGAAAGAAAGAA  1014

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGGAAGGAAGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGGAAGGAAGAG  1064

seq1  AGGAAGGAAGAAAGGAAATTCTATGGAAACAGCTTAGGATGTGAAGAGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGAAAGGAAATTCTATGGAAACAGCTTAGGATGTGAAGAGAA  1114

seq1  CAGTGAAATTTATTGCTCAGTGTTTTAAACTGAGCAATCAGAGTTAATTT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAATTTATTGCTCAGTGTTTTAAACTGAGCAATCAGAGTTAATTT  1164

seq1  AGTGATGAACAACTAGAGGATTGTTGAGTCTGTGCAGTGGGGGTTGGGGG  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGAACAACTAGAGGATTGTTGAGTCTGTGCAGTGGGGGTTGGGGG  1214

seq1  GAAATAATTTCTTTATAGCTATGTGGGATTTATGATCTGGAATTC  1292
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATTTCTTTATAGCTATGTGGGATTTATGATCTGGAATTC  1259

seq1: chr1_40683608_40683876
seq2: B6Ng01-107H07.g_74_342

seq1  CATGGTGGTTGAAGAGACCTGTATACTCTCCTTTGCCTGTGGGGTTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGTTGAAGAGACCTGTATACTCTCCTTTGCCTGTGGGGTTCATT  50

seq1  TTGTATTGCAATTATGGGGATTCCCCACCTTAAAATTCTGTGTATGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGCAATTATGGGGATTCCCCACCTTAAAATTCTGTGTATGTGTG  100

seq1  AGGCAGATTTAAACCAATTGAATTAGAAAATACCTACAATGCTCCTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATTTAAACCAATTGAATTAGAAAATACCTACAATGCTCCTGAGA  150

seq1  GATTGATGTTGGCGAAGATTTCACAGAAGCATGACCATTCTTAGTGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATGTTGGCGAAGATTTCACAGAAGCATGACCATTCTTAGTGCCAT  200

seq1  TAAACTCTTCTTGGAAATGGTTGAGATGTTTAAAATGTTAAGTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCTTCTTGGAAATGGTTGAGATGTTTAAAATGTTAAGTGTGTGTG  250

seq1  TGTATGTGTGTGTGTGTGT  269
      |||||||||||||||||||
seq2  TGTATGTGTGTGTGTGTGT  269