BAC Information

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BAC

Clone NameB6Ng01-107I10
Chromosome1 (Build37)
Map Location 114,301,288 - 114,413,032
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
Downstream geneLOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107I10.bB6Ng01-107I10.g
ACCDH914971DH914972
length1,1871,102
definitionDH914971|Mus musculus domesticus DNA, BAC clone: B6Ng01-107I10, 5' end.DH914972|Mus musculus domesticus DNA, BAC clone: B6Ng01-107I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,411,837 - 114,413,032)(114,301,288 - 114,302,412)
sequence
gaattcactctgtagactagacagaccttgaatgcagagttctgcctgcc
tctacttctgcctcttgaatgctgggataaagggtatgctccaccaccaa
ctagcatagacttgacccattaaaatggccctctggttgtgtctgcatag
aggtagacaagtgtataggatttcaacatgtggcagaagtactgatgaat
aagtgctggcagatatgttgctggttgtggtaggcaaaatagttggtgga
gactgaatcttgttttctagattagtgtttcttgatgggaacaaaaataa
catttaaccttatcacagtgaaaaatgaatttacaagttgttgtagacat
agggaattttttttccagagtaataaaatgtagggatgggaaatttctac
ttggtatacagggctaggaatagttcattggtacggagggacagcaaata
ccaacttgactcatagagacagaaaatacctgttatgcagaaataggaag
tatgcatttggctgcagacatcaagaaaatttagtgtgatttcttggcaa
aaaaatttaaattgaattaaaaagtgaacagatatatgggctgaaattct
gtatgctaaagatgcttaaataaatggttctgtgtatggagtcatagcta
gcttcacccagggcacagtctgttaattctggaactgtataatgtttcct
ttcctttttgaagcaggataaatgtcacttactatgggttgattgtacaa
atagtttggtaacttgctgtggtcctaggatgccatttctgtgatggaga
aaatctacagggagcaaatcttccaagaacactgtctcatcgatattggc
ctcagggctccacagcctgtacacattcatctcttcttgtcccatgtcac
tttcaagagtgaagtatgccatggggctgaaagagatacatttcaagatg
aatcaatgtcctataggccaagtgctctgcctttaggaagacagaacaat
tattatccacacactgctccttcctttttcaaggacaagtagaattgaat
tcctcataggctgcatttaaatatgcttattctgtagtgcttcctctgca
aaaccattcctccaccacactgctgttgcccatcatatactttgttagcc
aggacataaggaacaaactgtttcctatcttttaaag
gaattcattaatccatggtttcttcctggaaatgtatgtccaggtcctcg
aaactataatcaccatttgcactgtctttattccaacttctcagcccatt
tgctttcccttcattttctgtctcaatcttcttaattatgtgatttctaa
agaataaaagaatttaagttaatgtatcaaacttgaaagcttaaaatata
tactctgttaattattgtttccctcctaagtacaagaaaggtaaaccatc
aacattatatttgtttgaacaaaggataattcttgttcaaactaaagaca
tgaacattttctttcttttcttgtttttcatctttttttttttaaaatag
ggtctaaattgcctactacttaaatggactctttaaaaaaaacaaacaaa
caaacaaacaaaaaaaaaaccatgaaatagagtttatttagggcctgggg
aggggagttagcagcgtagaagaggcagagaaaggcagagaaaaggagag
agtaaagaagtaaaggccggccaagaccatgtggagagagtcgggaaggg
actggggagagagagggcaagctagaagcaagagtaagagagacaagaaa
agcaagagggcaagagttaaatggccttctattgacatttatcaagtact
aaaattaaaagcacatacaggcatgcccactggtgttctataactttctc
taaaagattcatgagaacctatcatctctaacataggagttgtcatctat
ttattatgtgaataacatttgcttttcataaaatgaacaatagttttccc
tgagtctctgctcctgattttacatttgctttttatataagccatttttc
taacacattaaacccaataccacaacatataggattgaagacagccaggg
ctatacagagaaactctgtctcaaagaccaaccaaaaaaaaaagatacca
ataattagaccaaatatagataaaatagtatactgcatctttttcttctc
actctactatggggagtaggtgctaagagataaggagttttagctattga
ttatacaaggcaatgaatttgtttgttttaacattctaggattctcgagt
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_114411837_114413032
seq2: B6Ng01-107I10.b_43_1229 (reverse)

seq1  CTTT-AAAGATAGG--ACAGTTTGTTTCTTTTATGTCCTTGCT-ACAAAG  46
      |||| |||||||||  |||||||||| |  ||||||||| ||| ||||||
seq2  CTTTAAAAGATAGGAAACAGTTTGTTCC--TTATGTCCTGGCTAACAAAG  48

seq1  TACATTGGATGAGCAACAGCAAGTGTGTGTGGAGG-ATGGTTGTGCAGAG  95
      || ||  |||| |||||||| |||||| ||||||| |||||| |||||||
seq2  TATAT--GATGGGCAACAGC-AGTGTG-GTGGAGGAATGGTTTTGCAGAG  94

seq1  GAAGCACTACAGAATAAAGCATATTTTAAATTGCAGGCCTATGAGGAATT  145
      ||||||||||||||| ||||||||||  || |||| ||||||||||||||
seq2  GAAGCACTACAGAAT-AAGCATATTT--AAATGCA-GCCTATGAGGAATT  140

seq1  CAATTCTACTTGTCCTTGAAAAAAGGAAGGGGCAGTGTGTTGGATAATAA  195
      |||||||||||||||||| ||||||||||| |||||||| ||||||||||
seq2  CAATTCTACTTGTCCTTG-AAAAAGGAAGGAGCAGTGTG-TGGATAATAA  188

seq1  TTGTTCTGTCTTCCTTAAAGGCAGAGCACTTGGCCTATAGGACATTGATT  245
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGTCTTCC-TAAAGGCAGAGCACTTGGCCTATAGGACATTGATT  237

seq1  CATCTTGAAATTGTATCTCTTTCAGCCCCATGGCATACTTCACTCTTGAA  295
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGAAA-TGTATCTCTTTCAGCCCCATGGCATACTTCACTCTTGAA  286

seq1  AGTGACATGGGACAAGAAGAGATGAATGTGTACAGGCTGTGGAGCCCTGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACATGGGACAAGAAGAGATGAATGTGTACAGGCTGTGGAGCCCTGA  336

seq1  GGCCAATATCGATGAGACAGTGTTCTTGGAAGATTTGCTCCCTGTAGATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAATATCGATGAGACAGTGTTCTTGGAAGATTTGCTCCCTGTAGATT  386

seq1  TTCTCCATCACAGAAATGGCATCCTAGGACCACAGCAAGTTACCAAACTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATCACAGAAATGGCATCCTAGGACCACAGCAAGTTACCAAACTA  436

seq1  TTTGTACAATCAACCCATAGTAAGTGACATTTATCCTGCTTCAAAAAGGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACAATCAACCCATAGTAAGTGACATTTATCCTGCTTCAAAAAGGA  486

seq1  AAGGAAACATTATACAGTTCCAGAATTAACAGACTGTGCCCTGGGTGAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACATTATACAGTTCCAGAATTAACAGACTGTGCCCTGGGTGAAG  536

seq1  CTAGCTATGACTCCATACACAGAACCATTTATTTAAGCATCTTTAGCATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTATGACTCCATACACAGAACCATTTATTTAAGCATCTTTAGCATA  586

seq1  CAGAATTTCAGCCCATATATCTGTTCACTTTTTAATTCAATTTAAATTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTCAGCCCATATATCTGTTCACTTTTTAATTCAATTTAAATTTT  636

seq1  TTTGCCAAGAAATCACACTAAATTTTCTTGATGTCTGCAGCCAAATGCAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAAGAAATCACACTAAATTTTCTTGATGTCTGCAGCCAAATGCAT  686

seq1  ACTTCCTATTTCTGCATAACAGGTATTTTCTGTCTCTATGAGTCAAGTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTATTTCTGCATAACAGGTATTTTCTGTCTCTATGAGTCAAGTTG  736

seq1  GTATTTGCTGTCCCTCCGTACCAATGAACTATTCCTAGCCCTGTATACCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGCTGTCCCTCCGTACCAATGAACTATTCCTAGCCCTGTATACCA  786

seq1  AGTAGAAATTTCCCATCCCTACATTTTATTACTCTGGAAAAAAAATTCCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAATTTCCCATCCCTACATTTTATTACTCTGGAAAAAAAATTCCC  836

seq1  TATGTCTACAACAACTTGTAAATTCATTTTTCACTGTGATAAGGTTAAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTACAACAACTTGTAAATTCATTTTTCACTGTGATAAGGTTAAAT  886

seq1  GTTATTTTTGTTCCCATCAAGAAACACTAATCTAGAAAACAAGATTCAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTTGTTCCCATCAAGAAACACTAATCTAGAAAACAAGATTCAGT  936

seq1  CTCCACCAACTATTTTGCCTACCACAACCAGCAACATATCTGCCAGCACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCAACTATTTTGCCTACCACAACCAGCAACATATCTGCCAGCACT  986

seq1  TATTCATCAGTACTTCTGCCACATGTTGAAATCCTATACACTTGTCTACC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCAGTACTTCTGCCACATGTTGAAATCCTATACACTTGTCTACC  1036

seq1  TCTATGCAGACACAACCAGAGGGCCATTTTAATGGGTCAAGTCTATGCTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCAGACACAACCAGAGGGCCATTTTAATGGGTCAAGTCTATGCTA  1086

seq1  GTTGGTGGTGGAGCATACCCTTTATCCCAGCATTCAAGAGGCAGAAGTAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGGTGGAGCATACCCTTTATCCCAGCATTCAAGAGGCAGAAGTAG  1136

seq1  AGGCAGGCAGAACTCTGCATTCAAGGTCTGTCTAGTCTACAGAGTGAATT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCAGAACTCTGCATTCAAGGTCTGTCTAGTCTACAGAGTGAATT  1186

seq1  C  1196
      |
seq2  C  1187

seq1: chr1_114301288_114302412
seq2: B6Ng01-107I10.g_68_1169

seq1  GAATTCATTAATCCATGGTTTCTTCCTGGAAATGTATGTCCAGGTCCTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATCCATGGTTTCTTCCTGGAAATGTATGTCCAGGTCCTCG  50

seq1  AAACTATAATCACCATTTGCACTGTCTTTATTCCAACTTCTCAGCCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATAATCACCATTTGCACTGTCTTTATTCCAACTTCTCAGCCCATT  100

seq1  TGCTTTCCCTTCATTTTCTGTCTCAATCTTCTTAATTATGTGATTTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCCTTCATTTTCTGTCTCAATCTTCTTAATTATGTGATTTCTAA  150

seq1  AGAATAAAAGAATTTAAGTTAATGTATCAAACTTGAAAGCTTAAAATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAAGAATTTAAGTTAATGTATCAAACTTGAAAGCTTAAAATATA  200

seq1  TACTCTGTTAATTATTGTTTCCCTCCTAAGTACAAGAAAGGTAAACCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTTAATTATTGTTTCCCTCCTAAGTACAAGAAAGGTAAACCATC  250

seq1  AACATTATATTTGTTTGAACAAAGGATAATTCTTGTTCAAACTAAAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATATTTGTTTGAACAAAGGATAATTCTTGTTCAAACTAAAGACA  300

seq1  TGAACATTTTCTTTCTTTTCTTGTTTTTCATCTTTTTTTTTTTAAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTTTCTTTCTTTTCTTGTTTTTCATCTTTTTTTTTTTAAAATAG  350

seq1  GGTCTAAATTGCCTACTACTTAAATGGACTCTTTAAAAAAAACAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAATTGCCTACTACTTAAATGGACTCTTTAAAAAAAACAAACAAA  400

seq1  CAAACAAACAAAAAAAAAACCATGAAATAGAGTTTATTTAGGGCCTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAAAAAAAACCATGAAATAGAGTTTATTTAGGGCCTGGGG  450

seq1  AGGGGAGTTAGCAGCGTAGAAGAGGCAGAGAAAGGCAGAGAAAAGGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGTTAGCAGCGTAGAAGAGGCAGAGAAAGGCAGAGAAAAGGAGAG  500

seq1  AGTAAAGAAGTAAAGGCCGGCCAAGACCATGTGGAGAGAGTCGGGAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAAGTAAAGGCCGGCCAAGACCATGTGGAGAGAGTCGGGAAGGG  550

seq1  ACTGGGGAGAGAGAGGGCAAGCTAGAAGCAAGAGTAAGAGAGACAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGAGAGAGAGGGCAAGCTAGAAGCAAGAGTAAGAGAGACAAGAAA  600

seq1  AGCAAGAGGGCAAGAGTTAAATGGCCTTCTATTGACATTTATCAAGTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGGGCAAGAGTTAAATGGCCTTCTATTGACATTTATCAAGTACT  650

seq1  AAAATTAAAAGCACATACAGGCATGCCCACTGGTGTTCTATAACTTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAAAGCACATACAGGCATGCCCACTGGTGTTCTATAACTTTCTC  700

seq1  TAAAAGATTCATGAGAACCTATCATCTCTAACATAGGAGTTGTCATCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATTCATGAGAACCTATCATCTCTAACATAGGAGTTGTCATCTAT  750

seq1  TTATTATGTGAATAACATTTGCTTTTCATAAAATGAACAATAGTTTTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGTGAATAACATTTGCTTTTCATAAAATGAACAATAGTTTTCCC  800

seq1  TGAGTCTCTGCTCCTGATTTTACATTTGCTTTTTATATAAGCCA-TTTTC  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGAGTCTCTGCTCCTGATTTTACATTTGCTTTTTATATAAGCCATTTTTC  850

seq1  TAACACATTAAACCCAATACCACAACATATAGGATTGAAGACAGCCAGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATTAAACCCAATACCACAACATATAGGATTGAAGACAGCCAGGG  900

seq1  CTATACAGAGAAACCCTGTCTCAAAAAGACCAAACCAAAAAAAAAAAGAT  949
      |||||||||||||| |||||||  |||||||||  | |||||||||||||
seq2  CTATACAGAGAAACTCTGTCTC--AAAGACCAA--CCAAAAAAAAAAGAT  946

seq1  ACCAAATAATTAGACCAAATAATAAGAATTAAAATAGTAATTACTGCAAT  999
      ||| |||||||||||||||||   |||  ||||||||||  |||||| ||
seq2  ACC-AATAATTAGACCAAATA--TAGA--TAAAATAGTA--TACTGC-AT  988

seq1  CTTTTTCTTCTTCACTTCTACCTAT-GTGAGTAAGGTGCTATAGAGAATT  1048
      |||||||||| |||| |||| |||| | |||| |||||||| |||||   
seq2  CTTTTTCTTC-TCAC-TCTA-CTATGGGGAGT-AGGTGCTA-AGAGA---  1030

seq1  AAAGGAGTTTTTAGCTATTGATTATACAAAGCAGTGATTTTGTTTTTGTT  1098
       |||||| ||||||||||||||||||||| ||| ||| |||||||    |
seq2  TAAGGAG-TTTTAGCTATTGATTATACAAGGCAATGAATTTGTTT---GT  1076

seq1  TTTAACATTCTTAGATTCTCAGAGTAT  1125
      |||||||||||  ||||||| ||||||
seq2  TTTAACATTCTAGGATTCTC-GAGTAT  1102