BAC Information

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BAC

Clone NameB6Ng01-108H19
Chromosome1 (Build37)
Map Location 53,768,130 - 53,878,735
singlet/doubletdoublet
Overlap geneStk17b, Hecw2
Upstream gene2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108H19.bB6Ng01-108H19.g
ACCDH915660DH915661
length1,145930
definitionDH915660|Mus musculus domesticus DNA, BAC clone: B6Ng01-108H19, 5' end.DH915661|Mus musculus domesticus DNA, BAC clone: B6Ng01-108H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,768,130 - 53,769,288)(53,877,807 - 53,878,735)
sequence
gaattctcaaaaggacaagagtcaagcactgacttcgattgcagaagtgt
accacgtttccatttggtcttggaagtagacatctgaggttggtcatggc
gattcaaatgtaacgtcacagccatttctatgaatagtaaaaagctgagg
agaagcagatagtaggcacggatggtgagaattggtaccagaaaatggtc
cgcaactaagcaaactaggtccatatccccatgagtacaaagccaaaaag
caccaagcagaaggcagaacatgctagaaacatatattgcctgcaaaggg
tatggagaatgtagaaccattttgaatgcagtgcatccctgaacaaagag
ttgggggttttatttgagatatatctttttatatagttaggaacttggga
gtaaacacatccctgagcttgcttggctcagggggcattaagatgatgaa
aagcatactgcggggaattctcagttctgtttcaaagaaatcatatatac
taattttataaaataatgaattatcatatttcatacatttatatctgtac
tttaattgtattttacccacagttccctgcttttcctctccctactgaat
attccttctaattcattataacttttttcttttaagtctagactccccgt
gagagaaatcatgtgataattgtgtttctgagtcttgcttatattattcg
acaatctctagtgcatttttttgcaaatgacacaatctcattcttccttg
tggctcaataatattccatgtgtccattttcttcatccactcatctgcta
tacctaaattgattcccataacttggatgttgtaagcagtgcctcagtaa
acatggatgtacaagtatccgtgttgtatgatgacgtaggtttcatggct
acatgcccagtagtcatacagatggatcatgtgacttcagttctactttc
aggattcttcctccttcctccttcctttttctctttctttctcctttctc
tctttcttctcttccttctctctttctttaactaatgcatttcacagaac
cacaatcattaaatgtctacaatactatttatggcctctacatccttgct
aaaattttttctttaagatagggtctcgggctagagggatgctca
gaattcagctgagatgtaaccccctcagaagagtccacccgacttcatca
ctcaggatttctgttcatcgttctggatgccttatttctgttagaggact
tacctaattcacccatgaagtttagttcgcatttgaccttaccagtgagc
tgaacacttgacacccaaggcatactgtttgtagaatgtttttaaatttg
actttctatgttcatctcaaaagctcaggactgccaggcggtggtggtgc
acacctttaatcccagcacttgggaggcagaggcaggtggatttctgagt
tcgaggccagcctggtctacagagtgagttccaggacagccagggctata
tagagaaaccctgtctcgaaaaaacaaacaaacaaacaaacaaacacaaa
acaaaacaaaacaaaacacaaaacaaaattgaggaccgatactagcatcc
acactacgaagttttaaagtctaaatgaggcaacacacactaatgcacaa
attaagtgaaggctaacacagcggtcagtagatgtaggtgaagaaggaac
ttgcttggaatgcatcgtttggggcatttcttctgctagttacctgcagg
acaggaattcctgcggctgtttgcactctccactgtactcatagatcagg
catctccgctaaggtgacctcatgagaagacttagaaacatggaattccc
aactctgacttcaaacgagtgcttctgtgacacacacagagatctctgtg
cgagtggccctaaaacgtacggagaaaagtggcatgaacaaacagccagg
attttgcacaccaaatactatgcaaacaagtagttggaggaactagccta
gggtttcggtccctttagtttgtatttatgactggtgatcgggagttgtg
tgccgccataggtataataagtagatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_53768130_53769288
seq2: B6Ng01-108H19.b_44_1188

seq1  GAATTCTCAAAAGGACAAGAGTCAAGCACTGACTTCGATTGCAGAAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAAGGACAAGAGTCAAGCACTGACTTCGATTGCAGAAGTGT  50

seq1  ACCACGTTTCCATTTGGTCTTGGAAGTAGACATCTGAGGTTGGTCATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGTTTCCATTTGGTCTTGGAAGTAGACATCTGAGGTTGGTCATGGC  100

seq1  GATTCAAATGTAACGTCACAGCCATTTCTATGAATAGTAAAAAGCTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAATGTAACGTCACAGCCATTTCTATGAATAGTAAAAAGCTGAGG  150

seq1  AGAAGCAGATAGTAGGCACGGATGGTGAGAATTGGTACCAGAAAATGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGATAGTAGGCACGGATGGTGAGAATTGGTACCAGAAAATGGTC  200

seq1  CGCAACTAAGCAAACTAGGTCCATATCCCCATGAGTACAAAGCCAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACTAAGCAAACTAGGTCCATATCCCCATGAGTACAAAGCCAAAAAG  250

seq1  CACCAAGCAGAAGGCAGAACATGCTAGAAACATATATTGCCTGCAAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGCAGAAGGCAGAACATGCTAGAAACATATATTGCCTGCAAAGGG  300

seq1  TATGGAGAATGTAGAACCATTTTGAATGCAGTGCATCCCTGAACAAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGAATGTAGAACCATTTTGAATGCAGTGCATCCCTGAACAAAGAG  350

seq1  TTGGGGGTTTTATTTGAGATATATCTTTTTATATAGTTAGGAACTTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGTTTTATTTGAGATATATCTTTTTATATAGTTAGGAACTTGGGA  400

seq1  GTAAACACATCCCTGAGCTTGCTTGGCTCAGGGGGCATTAAGATGATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACACATCCCTGAGCTTGCTTGGCTCAGGGGGCATTAAGATGATGAA  450

seq1  AAGCATACTGCGGGGAATTCTCAGTTCTGTTTCAAAGAAATCATATATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATACTGCGGGGAATTCTCAGTTCTGTTTCAAAGAAATCATATATAC  500

seq1  TAATTTTATAAAATAATGAATTATCATATTTCATACATTTATATCTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATAAAATAATGAATTATCATATTTCATACATTTATATCTGTAC  550

seq1  TTTAATTGTATTTTACCCACAGTTCCCTGCTTTTCCTCTCCCTACTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGTATTTTACCCACAGTTCCCTGCTTTTCCTCTCCCTACTGAAT  600

seq1  ATTCCTTCTAATTCATTATAACTTTTTTCTTTTAAGTCTAGACTCCCCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCTAATTCATTATAACTTTTTTCTTTTAAGTCTAGACTCCCCGT  650

seq1  GAGAGAAATCATGTGATAATTGTGTTTCTGAGTCTTGCTTATATTATTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAATCATGTGATAATTGTGTTTCTGAGTCTTGCTTATATTATTCG  700

seq1  ACAATCTCTAGTGCATTTTTTTGCAAATGACACAATCTCATTCTTCCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTCTAGTGCATTTTTTTGCAAATGACACAATCTCATTCTTCCTTG  750

seq1  TGGCTCAATAATATTCCATGTGTCCATTTTCTTCATCCACTCATCTGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAATAATATTCCATGTGTCCATTTTCTTCATCCACTCATCTGCTA  800

seq1  TACCTAAATTGATTCCCATAACTTGGATGTTGTAAGCAGTGCCTCAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAATTGATTCCCATAACTTGGATGTTGTAAGCAGTGCCTCAGTAA  850

seq1  ACATGGATGTACAAGTATCCGTGTTGTATGATGACGTAGGTTTCATGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATGTACAAGTATCCGTGTTGTATGATGACGTAGGTTTCATGGCT  900

seq1  ACATGCCCAGTAGTCATACAGATGGATCATGTGACTTCAGTTCTACTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCCAGTAGTCATACAGATGGATCATGTGACTTCAGTTCTACTTTC  950

seq1  AGGATTCTTCCTTCCTTCCTTCCTTCCTTTTTCTCTTTCTTTCTTCCTTT  1000
      ||||||||||| ||||||| ||||||||||||||||||||||| ||||||
seq2  AGGATTCTTCC-TCCTTCC-TCCTTCCTTTTTCTCTTTCTTTC-TCCTTT  997

seq1  CTCTCTTTCTTCTCTTCCTTCTCTCTTTCTTTTAACCTAATGCCAATTTC  1050
      ||||||||||||||||||||||||||||||||  | |||||||  |||| 
seq2  CTCTCTTTCTTCTCTTCCTTCTCTCTTTCTTT--AACTAATGC--ATTT-  1042

seq1  CACAGAACCACAATCATTTAAATGTCTACCAATACTATATAATGGCTCTA  1100
      |||||||||||||||| ||||||||||| ||||||||| ||  | |||||
seq2  CACAGAACCACAATCA-TTAAATGTCTA-CAATACTATTTATGGCCTCTA  1090

seq1  CATCCTTGCTAAAATTTTTTCTTTTAAGATAGGGGTCTCGGGGCTAGAGG  1150
      ||||||||||||||||||||| ||||||||| ||||||| ||||||||||
seq2  CATCCTTGCTAAAATTTTTTC-TTTAAGATA-GGGTCTC-GGGCTAGAGG  1137

seq1  GATGGCTCA  1159
      ||| |||||
seq2  GAT-GCTCA  1145

seq1: chr1_53877807_53878735
seq2: B6Ng01-108H19.g_66_995 (reverse)

seq1  AAATATCTACCTATATAACCTATGGCGGCACACAACTCCCGATCACCAGT  50
      |||||||||| |||   |||||||||||||||||||||||||||||||||
seq2  AAATATCTACTTATTATACCTATGGCGGCACACAACTCCCGATCACCAGT  50

seq1  CAATAAATACAAACTAAAGGGAACGAAA-CCTAGGCTAGTTCCTCCAACT  99
      | |||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  C-ATAAATACAAACTAAAGGGACCGAAACCCTAGGCTAGTTCCTCCAACT  99

seq1  ACTTGTTTGCATAGTATTTGGTGTGCAAAATCCTGGCTGTTTGTTCATGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTGCATAGTATTTGGTGTGCAAAATCCTGGCTGTTTGTTCATGC  149

seq1  CACTTTTCTCCGTACGTTTTAGGGCCACTCGCACAGAGATCTCTGTGTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCTCCGTACGTTTTAGGGCCACTCGCACAGAGATCTCTGTGTGT  199

seq1  GTCACAGAAGCACTCGTTTGAAGTCAGAGTTGGGAATTCCATGTTTCTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGAAGCACTCGTTTGAAGTCAGAGTTGGGAATTCCATGTTTCTAA  249

seq1  GTCTTCTCATGAGGTCACCTTAGCGGAGATGCCTGATCTATGAGTACAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCATGAGGTCACCTTAGCGGAGATGCCTGATCTATGAGTACAGT  299

seq1  GGAGAGTGC-AACAGCCGCAGGAATTCCTGTCCTGCAGGTAACTAGCAGA  348
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTGCAAACAGCCGCAGGAATTCCTGTCCTGCAGGTAACTAGCAGA  349

seq1  AGAAATGCCCCAAACGATGCATTCCAAGCAAGTTCCTTCTTCACCTACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCCCCAAACGATGCATTCCAAGCAAGTTCCTTCTTCACCTACAT  399

seq1  CTACTGACCGCTGTGTTAGCCTTCACTTAATTTGTGCATTAGTGTGTGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGACCGCTGTGTTAGCCTTCACTTAATTTGTGCATTAGTGTGTGTT  449

seq1  GCCTCATTTAGACTTTAAAACTTCGTAGTGTGGATGCTAGTATCGGTCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTTAGACTTTAAAACTTCGTAGTGTGGATGCTAGTATCGGTCCT  499

seq1  CAATTTTGTTTTGTGTTTTGTTTTGTTTTGTTTTGTGTTTGTTTGTTTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGTTTTGTGTTTTGTTTTGTTTTGTTTTGTGTTTGTTTGTTTGT  549

seq1  TTGTTTGTTTTTTCGAGACAGGGTTTCTCTATATAGCCCTGGCTGTCCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTTCGAGACAGGGTTTCTCTATATAGCCCTGGCTGTCCTG  599

seq1  GAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  649

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACCGCCTGGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACCGCCTGGCA  699

seq1  GTCCTGAGCTTTTGAGATGAACATAGAAAGTCAAATTTAAAAACATTCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGCTTTTGAGATGAACATAGAAAGTCAAATTTAAAAACATTCTA  749

seq1  CAAACAGTATGCCTTGGGTGTCAAGTGTTCAGCTCACTGGTAAGGTCAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGTATGCCTTGGGTGTCAAGTGTTCAGCTCACTGGTAAGGTCAAA  799

seq1  TGCGAACTAAACTTCATGGGTGAATTAGGTAAGTCCTCTAACAGAAATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAACTAAACTTCATGGGTGAATTAGGTAAGTCCTCTAACAGAAATAA  849

seq1  GGCATCCAGAACGATGAACAGAAATCCTGAGTGATGAAGTCGGGTGGACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCAGAACGATGAACAGAAATCCTGAGTGATGAAGTCGGGTGGACT  899

seq1  CTTCTGAGGGGGTTACATCTCAGCTGAATTC  929
      |||||||||||||||||||||||||||||||
seq2  CTTCTGAGGGGGTTACATCTCAGCTGAATTC  930