BAC Information

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BAC

Clone NameB6Ng01-108J04
Chromosome1 (Build37)
Map Location 189,806,400 - 189,903,359
singlet/doubletdoublet
Overlap geneEsrrg, 9330162B11Rik
Upstream geneSpata17, Gpatch2
Downstream geneUsh2a, Kctd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108J04.bB6Ng01-108J04.g
ACCDH915724DH915725
length1,142944
definitionDH915724|Mus musculus domesticus DNA, BAC clone: B6Ng01-108J04, 5' end.DH915725|Mus musculus domesticus DNA, BAC clone: B6Ng01-108J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(189,806,400 - 189,807,545)(189,902,412 - 189,903,359)
sequence
gaattctaggggccgagggcacacacagggctatgtctaggggtcaggag
tgttgagaaggggactctggaggcgttgtttgaacctgggggatctacat
gtgaactgtgagcagacatagagaaatcactgtaatataaattacccaga
ccccgaagagcttctaattctctggcaagtctctagcactgtcctctctg
cagggactccaccctgcttctctggagccactccattttgttggatacgc
ttgaacggacaagtggtaccaagtagagacaatgacaactcggcattacg
tttgataatcaatttcttgtacggtgagcagacacactcagcagagggtt
aacatttcaaattctttccaatggggcagtaaaactcaggaaggggtgaa
gaacgcccttgccgttcatgtgtctagtatctccatagtctattgttaga
aatacaaccctgtattgacaagtgtggcatggtaagttcagagcatcttt
aatgaatgtcagcctccacacaggtaggcatctgccagccaacagttcct
gggcctgggaaaaatggtacacattaaaaaaaaaaaaaaatcaaaccctt
tcggttcctaaaaattcttcagttactgtctctccccagcatctaaggca
gagttactatttcttttttcttttcttttttccttcttcttctttttaaa
tgttgagcacgttcttttacagggcttagaaatctttctggtccaattga
acaagaaaggactcctcttgtgccttttttttttttctccaggctgatga
agccttatagaaatgtaaatgcattaaggggcgctcacaggaagcttgtg
ccaggctccactcttctccctgattctgctgctgtgtgcatctcgtgtgt
aagggcatttattagctaaaagtttacaacaaaaaactttgaaaggagaa
tatatttccctggctagatgcttttatttcatttggcgaactgcttggtg
ttttagctcccttatcagaactgcatgggctgctgggctaaattggaaca
tctccacactgtttgacaaataagattttttgtaactgattaggcttcat
tgttggcatttcataattagcagaacttcatgtccaaaatcg
gaattctttacttatgaaagaatttcagtgctgaagcaaagaccaaagtc
aaagacacatttgggagataagaggagaccctccttcctttagacacata
acacaggaacacatttactctgtcactgttagtgaagttgaggttataac
tttcccccctatgttaccccctttagacactacctgatgactctgcagag
ttctatacaaagttcaggatcattgagaaatatatatttcacaaagcaaa
aacctagcagtgctagtgtggaagactgaaggctacaaatgggagatggg
accgtcagaggacacccaggctttcctcagggcaagtgctagccactgcc
accatctctaccacaacttcacattttccagaacaggaaacttcacaaac
tagagttgatggtgatacttaaaaggaccatgtacggagaggacagagcc
atctaactcagtccaccttctctttctgtgtttctttctttctctatttg
gcagatttcttgtggtagggtctcagtatgctaccaaggctggcttcaga
tttctgcactcaagtcactctttggcctcagctttcccaagaacctagaa
acagaagaaccaccattccccagtgtgtcacatgcacttttcatgccaac
ctaatgcttcattaattgagtgggacggagctaccaggaaggatgagtaa
gccaatagaagccatgcttgactaaaagtcatgacatggacccaaaacat
gtatcaattgggttgacagctataaaggagttcctgggagggagacactt
cagcctgcttctagatattataaggattggggtgcatttgtgagggagca
gaacaatatttatacaggccaaagcatcagccacaatccagtttccctcc
aatacttccaaattattcatgagttgatactaactcatactgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189806400_189807545
seq2: B6Ng01-108J04.b_42_1183

seq1  GAATTCTAGGGGCCGAGGGCACACACAGGGCTATGTCTAGGGGTCAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGGGCCGAGGGCACACACAGGGCTATGTCTAGGGGTCAGGAG  50

seq1  TGTTGAGAAGGGGACTCTGGAGGCGTTGTTTGAACCTGGGGGATCTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGAAGGGGACTCTGGAGGCGTTGTTTGAACCTGGGGGATCTACAT  100

seq1  GTGAACTGTGAGCAGACATAGAGAAATCACTGTAATATAAATTACCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTGTGAGCAGACATAGAGAAATCACTGTAATATAAATTACCCAGA  150

seq1  CCCCGAAGAGCTTCTAATTCTCTGGCAAGTCTCTAGCACTGTCCTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAAGAGCTTCTAATTCTCTGGCAAGTCTCTAGCACTGTCCTCTCTG  200

seq1  CAGGGACTCCACCCTGCTTCTCTGGAGCCACTCCATTTTGTTGGATACGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACTCCACCCTGCTTCTCTGGAGCCACTCCATTTTGTTGGATACGC  250

seq1  TTGAACGGACAAGTGGTACCAAGTAGAGACAATGACAACTCGGCATTACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACGGACAAGTGGTACCAAGTAGAGACAATGACAACTCGGCATTACG  300

seq1  TTTGATAATCAATTTCTTGTACGGTGAGCAGACACACTCAGCAGAGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAATCAATTTCTTGTACGGTGAGCAGACACACTCAGCAGAGGGTT  350

seq1  AACATTTCAAATTCTTTCCAATGGGGCAGTAAAACTCAGGAAGGGGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCAAATTCTTTCCAATGGGGCAGTAAAACTCAGGAAGGGGTGAA  400

seq1  GAACGCCCTTGCCGTTCATGTGTCTAGTATCTCCATAGTCTATTGTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCCCTTGCCGTTCATGTGTCTAGTATCTCCATAGTCTATTGTTAGA  450

seq1  AATACAACCCTGTATTGACAAGTGTGGCATGGTAAGTTCAGAGCATCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAACCCTGTATTGACAAGTGTGGCATGGTAAGTTCAGAGCATCTTT  500

seq1  AATGAATGTCAGCCTCCACACAGGTAGGCATCTGCCAGCCAACAGTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGTCAGCCTCCACACAGGTAGGCATCTGCCAGCCAACAGTTCCT  550

seq1  GGGCCTGGGAAAAATGGTACACATTAAAAAAAAAAAAAAATCAAACCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGGGAAAAATGGTACACATTAAAAAAAAAAAAAAATCAAACCCTT  600

seq1  TCGGTTCCTAAAAATTCTTCAGTTACTGTCTCTCCCCAGCATCTAAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTCCTAAAAATTCTTCAGTTACTGTCTCTCCCCAGCATCTAAGGCA  650

seq1  GAGTTACTATTTCTTTTTTCTTTTCTTTTTTCCTTCTTCTTCTTTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTATTTCTTTTTTCTTTTCTTTTTTCCTTCTTCTTCTTTTTAAA  700

seq1  TGTTGAGCACGTTCTTTTACAGGGCTTAGAAATCTTTCTGGTCCAATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGCACGTTCTTTTACAGGGCTTAGAAATCTTTCTGGTCCAATTGA  750

seq1  ACAAGAAAGGACTCCTCTTGTGCCTTTTTTTTTTTTCTCCAGGCTGATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAGGACTCCTCTTGTGCCTTTTTTTTTTTTCTCCAGGCTGATGA  800

seq1  AGCCTTATAGAAATGTAAATGCATTAAGGGGCGCTCACAGGAAGCTTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATAGAAATGTAAATGCATTAAGGGGCGCTCACAGGAAGCTTGTG  850

seq1  CCAGGCTCCACTCTTCTCCCTGATTCTGCTGCTGTGTGCATCTCGTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCCACTCTTCTCCCTGATTCTGCTGCTGTGTGCATCTCGTGTGT  900

seq1  AAGGGCATTTAATTAGCTACAAG-TTACAAC-AAAGACTTTGAAAGGAGA  948
      |||||||||| |||||||| ||| ||||||| ||| ||||||||||||||
seq2  AAGGGCATTT-ATTAGCTAAAAGTTTACAACAAAAAACTTTGAAAGGAGA  949

seq1  ATATA--TCCCTGGCTAGATGCTTTTATTTTCATTTGGCGAACTGCTGGG  996
      |||||  |||||||||||||||||||| ||||||||||||||||||| ||
seq2  ATATATTTCCCTGGCTAGATGCTTTTA-TTTCATTTGGCGAACTGCTTGG  998

seq1  TG-TTTAGCTCCCTTATCAAGAACTGCATGGGCTGCTGGGCTAAATTGGG  1045
      || ||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  TGTTTTAGCTCCCTTATC-AGAACTGCATGGGCTGCTGGGCTAAATT-GG  1046

seq1  AGCATCTCCACACTGTTTGACAAATAGATTTTTTTGTAAACTGATTTAGC  1095
      | ||||||||||||||||||||||||   |||||||| |||||| |||| 
seq2  AACATCTCCACACTGTTTGACAAATAAGATTTTTTGT-AACTGA-TTAGG  1094

seq1  CTTTCCATTGTTTGCATTTCATTATATAGCAG-ACTTCATGTCACAAAAT  1144
      |||  ||||||| ||||||||| || |||||| |||||||||| ||||||
seq2  CTT--CATTGTTGGCATTTCATAAT-TAGCAGAACTTCATGTC-CAAAAT  1140

seq1  CG  1146
      ||
seq2  CG  1142

seq1: chr1_189902412_189903359
seq2: B6Ng01-108J04.g_61_1004 (reverse)

seq1  CTCAGTATTGAGTTAGTATCAACTCATGAATAATTTGGAAGTATTTGGAA  50
      ||||||| ||||||||||||||||||||||||||||||||||| ||||| 
seq2  CTCAGTA-TGAGTTAGTATCAACTCATGAATAATTTGGAAGTA-TTGGAG  48

seq1  GGAAACTGGATTGTTGGCTGATGCTTTGGCCTGTTTAAATATTTGTTCCT  100
      ||||||||||||| |||||||||||||||||||| |||||| ||||| ||
seq2  GGAAACTGGATTG-TGGCTGATGCTTTGGCCTGTATAAATA-TTGTT-CT  95

seq1  GCTTCCCTCACAAATGCACCCCATTCTTTATAATATCTAGAAGCAGGCTG  150
      || |||||||||||||||||||| || |||||||||||||||||||||||
seq2  GC-TCCCTCACAAATGCACCCCAATCCTTATAATATCTAGAAGCAGGCTG  144

seq1  AAGTGTCTCCCTCCCAGGAACTCCTTTATAGCTGTCAACCCAATTGATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTCCCTCCCAGGAACTCCTTTATAGCTGTCAACCCAATTGATAC  194

seq1  ATGTTTTGGGTCCATGTCATGACTTTTAGTC-AGCATGGCTTCTATTGGC  249
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGTTTTGGGTCCATGTCATGACTTTTAGTCAAGCATGGCTTCTATTGGC  244

seq1  TTACTCATCCTTCCTGGTAGCTCCGTCCCACTCAATTAATGAAGCATTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCATCCTTCCTGGTAGCTCCGTCCCACTCAATTAATGAAGCATTAG  294

seq1  GTTGGCATGAAAAGTGCATGTGACACACTGGGGAATGGTGGTTCTTCTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCATGAAAAGTGCATGTGACACACTGGGGAATGGTGGTTCTTCTGT  344

seq1  TTCTAGGTTCTTGGG-AAGCTGAGGCCAAAGAGTGACTTGAGTGCAGAAA  398
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCTAGGTTCTTGGGAAAGCTGAGGCCAAAGAGTGACTTGAGTGCAGAAA  394

seq1  TCTGAAGCCAGCCTTGGTAGCATACTGAGACCCTACCACAAGAAATCTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCCAGCCTTGGTAGCATACTGAGACCCTACCACAAGAAATCTGC  444

seq1  CAAATAGAGAAAGAAAGAAACACAGAAAGAGAAGGTGGACTGAGTTAGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGAGAAAGAAAGAAACACAGAAAGAGAAGGTGGACTGAGTTAGAT  494

seq1  GGCTCTGTCCTCTCCGTACATGGTCCTTTTAAGTATCACCATCAACTCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTCCTCTCCGTACATGGTCCTTTTAAGTATCACCATCAACTCTA  544

seq1  GTTTGTGAAGTTTCCTGTTCTGGAAAATGTGAAGTTGTGGTAGAGATGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGAAGTTTCCTGTTCTGGAAAATGTGAAGTTGTGGTAGAGATGGT  594

seq1  GGCAGTGGCTAGCACTTGCCCTGAGGAAAGCCTGGGTGTCCTCTGACGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGCTAGCACTTGCCCTGAGGAAAGCCTGGGTGTCCTCTGACGGT  644

seq1  CCCATCTCCCATTTGTAGCCTTCAGTCTTCCACACTAGCACTGCTAGGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCCCATTTGTAGCCTTCAGTCTTCCACACTAGCACTGCTAGGTT  694

seq1  TTTGCTTTGTGAAATATATATTTCTCAATGATCCTGAACTTTGTATAGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTGTGAAATATATATTTCTCAATGATCCTGAACTTTGTATAGAA  744

seq1  CTCTGCAGAGTCATCAGGTAGTGTCTAAAGGGGGTAACATAGGGGGGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGAGTCATCAGGTAGTGTCTAAAGGGGGTAACATAGGGGGGAAA  794

seq1  GTTATAACCTCAACTTCACTAACAGTGACAGAGTAAATGTGTTCCTGTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAACCTCAACTTCACTAACAGTGACAGAGTAAATGTGTTCCTGTGT  844

seq1  TATGTGTCTAAAGGAAGGAGGGTCTCCTCTTATCTCCCAAATGTGTCTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTCTAAAGGAAGGAGGGTCTCCTCTTATCTCCCAAATGTGTCTTT  894

seq1  GACTTTGGTCTTTGCTTCAGCACTGAAATTCTTTCATAAGTAAAGAATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGGTCTTTGCTTCAGCACTGAAATTCTTTCATAAGTAAAGAATTC  944