BAC Information

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BAC

Clone NameB6Ng01-108N20
Chromosome1 (Build37)
Map Location 6,350,852 - 6,352,020
singlet/doubletsinglet
Overlap geneEG620393
Upstream geneOprk1, Npbwr1, 4732440D04Rik, Rb1cc1
Downstream geneLOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108N20.bB6Ng01-108N20.g
ACCDH915937DH915938
length1,1711,136
definitionDH915937|Mus musculus domesticus DNA, BAC clone: B6Ng01-108N20, 5' end.DH915938|Mus musculus domesticus DNA, BAC clone: B6Ng01-108N20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatactgaatagctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccaggtaacagcaaatcctggagtgggtgtgagaaagaagaacagtcct
ccattgatggtggtattgcaaactggcacaatcactctggaaatccgttt
caaggttcctcagaaaactggacatagtagtaccagaagataaagcaatt
cttctcctgggcatatacccagaagatgctctagctcgtaataaggacac
atgctccactatgttcatagcagccttatttataatagccagaagctgga
aagaagccagatgtccctaaacagaggaatggatacagtaaatgtggtac
atttacacaatggagtactattcatctattaaaaacaatgaattcatgaa
attcttagacaaattgatggatctggaggatatcagcctgagtgaggtaa
ccaatcacaaaagaacacacatgctatgcactcactaataagtggatatt
agcccagaagctcagaatacccaagatacaatttgcaaaacacatgaaac
tcaagaagaaggaagaccaaagtgtggatactttgatccttcttagaatg
gggaacaaaatacccatggaaggagttaccgagacaaagctcagagcaga
gcatgaaggaatgaccatccagagactgccccacctgggggtccatcccc
taaacaaccaccaaacccagacactcatgcacataccaacaatagcctgc
tgacaggaccctgacatagctgtctcctgagaggatgtgccagtgcctga
ctaatacagaagtggatgctcacagtcatccattggacggagcacagggt
ccccaatgaaggagctagagaaagtacccaagagctaaaggtgtttgcag
cccctaggaggaacatataaactgaccagtatcccagagcttcctgggtc
taaatcacatcaaacaaacaaacaaaaaccccaacaacatgagaaatgac
ttctagctgcatatgtagcagagatgctagtagacatcaatggaagagag
gccctgtctgtgaagttatatgcccagctaggagaacgccaggcagaacc
tggatggtgggtttggggaac
gaattccagagaaaaaaaaaaaaaaaagaaagaattccagaacttaagcc
taaaaacacaggcagggacacaagagacttctgctactctcacacgatta
cccagtgggagttccaggacattttaaaccacccctgaactcgttttttt
tttttcaccagctgaggctgggtaacattacaggttctactttagactaa
cagagggcaactgcaggcttgctcaacatggatgacagtcgttggcctcg
aggacttgggagacgcttcctcctggatgaattatgaccacttaccgctc
ctatgaaaacttcccgatgggaacttgtcttctctgcattcatgtccttg
cttttccttgatccatgtcaagagttccattcatagactcagatgtaacc
agtcaccctctctctccccatgtaaacaagatacagtaatcaaaagatga
ggccacctcaaacagctgtagaaagcaataaattttgagggtgagtcata
gctcattttctttgaggctatacggtttttacatcttctttgtcatttgg
gaggagaattgctggttgaatctaggcccgcatgtgttctaggatatagt
tctaccactgaactatatcccccaattttctccaatgtctttaaccagag
aaatcgcattaaactaaaataaaacaggtaaaattcatgtgttaccataa
gtgattttgcaatttgatgtttttctcacgttccgtttgtattctaaagc
aacactagtacctgagataaatagttttgttagcaataattttcaagtca
aagggtataataatgtgaaagcatcaaggtatgactcccccatactgaat
gcccctactgccttatctggagagcttccagataataggtttggtctata
tcccttactagccttcatgtctttctgtcacttccctctgctctctcctg
ctggctcactcagtctgtgtatgggcacgcccctactctctctcctcaga
catgtagtgagacagacacactggtctctatcatcttcttgatctcagtt
ctcttgcagttgtactgggagattctcactgagctataggtgactggaat
tattttatctaactgcaaaggatgtcacctcttagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_6350852_6352020
seq2: B6Ng01-108N20.g_70_1205 (reverse)

seq1  GCTAAGAGGTGACCCATACCTATTTTACCAGTTATGATATAAATATATTC  50
      ||||||||||||  ||| |     ||  |||||| |||| ||||| ||| 
seq2  GCTAAGAGGTGA--CATCC-----TTTGCAGTTA-GATA-AAATA-ATT-  39

seq1  CCAGTCACCCTATAGCTTCTAGTGAGAAATTCCTTCCCAGGTACATACCT  100
      ||||||| |||||||||   ||||||||  ||  ||||| ||||| ||  
seq2  CCAGTCA-CCTATAGCT--CAGTGAGAA--TC--TCCCA-GTACA-AC--  78

seq1  TGC-AGAGAACTGAGATCAAGAAGATGGATAGGAGGACAAGTGTGTCTGT  149
      ||| |||||||||||||||||||||| |||||   ||| |||||||||||
seq2  TGCAAGAGAACTGAGATCAAGAAGAT-GATAG--AGACCAGTGTGTCTGT  125

seq1  CCTTCACTACATGTCTGAGGGAGAGAGAGTAGGGGCGTGCACATACACAG  199
      |  ||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  C--TCACTACATGTCTGA-GGAGAGAGAGTAGGGGCGTGCCCATACACAG  172

seq1  ACTGAGTGAGCCAGGCAGGGAGAGAAGCAGAGGGAAGTGACAGAAAGACA  249
      ||||||||||||| ||| |||||| |||||||||||||||||||||||||
seq2  ACTGAGTGAGCCA-GCA-GGAGAG-AGCAGAGGGAAGTGACAGAAAGACA  219

seq1  TGGAAGGCTAGTAAGGGGATATAGACCAAACCTATTTATCTGGAAGCTCT  299
      | |||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  T-GAAGGCTAGTAA-GGGATATAGACCAAACCTA-TTATCTGGAAGCTCT  266

seq1  CCAGATAAGGCAGTAGGGGCATTCAGTATGGGGGAGTCATACCTTGATGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAAGGCAGTAGGGGCATTCAGTATGGGGGAGTCATACCTTGATGC  316

seq1  TTTCACATTATTATACCCTTTGACTTGAAAATTATTGCTAACAAAACTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATTATTATACCCTTTGACTTGAAAATTATTGCTAACAAAACTAT  366

seq1  TTATCTCAGGTACTAGTGTTGCTTTAGAATACAAACGGAACGTGAGAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAGGTACTAGTGTTGCTTTAGAATACAAACGGAACGTGAGAAAA  416

seq1  ACATCAAATTGCAAAATCACTTATGGTAACACATGAATTTTACCTGTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAATTGCAAAATCACTTATGGTAACACATGAATTTTACCTGTTTT  466

seq1  ATTTTAGTTTAATGCGATTTCTCTGGTTAAAGACATTGGAGAAAATTGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTTTAATGCGATTTCTCTGGTTAAAGACATTGGAGAAAATTGGG  516

seq1  GGATATAGTTCAGTGGTAGAACTATATCCTAGAACACATGCGGGCCTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAGTTCAGTGGTAGAACTATATCCTAGAACACATGCGGGCCTAGA  566

seq1  TTCAACCAGCAATTCTCCTCCCAAATGACAAAGAAGATGTAAAAACCGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCAGCAATTCTCCTCCCAAATGACAAAGAAGATGTAAAAACCGTA  616

seq1  TAGCCTCAAAGAAAATGAGCTATGACTCACCCTCAAAATTTATTGCTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCAAAGAAAATGAGCTATGACTCACCCTCAAAATTTATTGCTTTC  666

seq1  TACAGCTGTTTGAGGTGGCCTCATCTTTTGATTACTGTATCTTGTTTACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTGTTTGAGGTGGCCTCATCTTTTGATTACTGTATCTTGTTTACA  716

seq1  TGGGGAGAGAGAGGGTGACTGGTTACATCTGAGTCTATGAATGGAACTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGAGAGAGGGTGACTGGTTACATCTGAGTCTATGAATGGAACTCT  766

seq1  TGACATGGATCAAGGAAAAGCAAGGACATGAATGCAGAGAAGACAAGTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGGATCAAGGAAAAGCAAGGACATGAATGCAGAGAAGACAAGTTC  816

seq1  CCATCGGGAAGTTTTCATAGGAGCGGTAAGTGGTCATAATTCATCCAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGGGAAGTTTTCATAGGAGCGGTAAGTGGTCATAATTCATCCAGGA  866

seq1  GGAAGCGTCTCCCAAGTCCTCGAGGCCAACGACTGTCATCCATGTTGAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCGTCTCCCAAGTCCTCGAGGCCAACGACTGTCATCCATGTTGAGC  916

seq1  AAGCCTGCAGTTGCCCTCTGTTAGTCTAAAGTAGAACCTGTAATGTTACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGCAGTTGCCCTCTGTTAGTCTAAAGTAGAACCTGTAATGTTACC  966

seq1  CAGCCTCAGCTGGTGAAAAAAAAAAAACGAGTTCAGGGGTGGTTTAAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCAGCTGGTGAAAAAAAAAAAACGAGTTCAGGGGTGGTTTAAAAT  1016

seq1  GTCCTGGAACTCCCACTGGGTAATCGTGTGAGAGTAGCAGAAGTCTCTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAACTCCCACTGGGTAATCGTGTGAGAGTAGCAGAAGTCTCTTG  1066

seq1  TGTCCCTGCCTGTGTTTTTAGGCTTAAGTTCTGGAATTCTTTCTTTTTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGCCTGTGTTTTTAGGCTTAAGTTCTGGAATTCTTTCTTTTTTT  1116

seq1  TTTTTTTTTCTCTGGAATTC  1169
      ||||||||||||||||||||
seq2  TTTTTTTTTCTCTGGAATTC  1136