BAC Information

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BAC

Clone NameB6Ng01-109B20
Chromosome1 (Build37)
Map Location 172,719,462 - 172,856,480
singlet/doubletdoublet
Overlap geneAtf6, Dusp12, Fcrlb, Fcrla, LOC100040778
Upstream geneLOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b
Downstream geneFcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109B20.bB6Ng01-109B20.g
ACCDH916111DH916112
length1,1171,025
definitionDH916111|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B20, 5' end.DH916112|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,855,337 - 172,856,480)(172,719,462 - 172,720,488)
sequence
gaattctctctacatccggagtgacttctaaaactccagctcttgttgtg
gcacataaaaccccaaacctggtacccactaaaccccctcagcctctttg
gcatacccaaagccttcccacttccactctcacaaaactcaatgagcctg
catttccattcacagcccagattcctatctgcctccgagatttgcttata
ttgttagctccatctgaaatgacctctgccatgactccccagtcccctcc
ccctttacaagcatctaagtatccttaaagactccatcttgagagcatct
tctgaaagaagccttgttggatccccagtggctgcccctgacactttgtt
attgctgttatccaaacactacaacaatcctttcttatgcatggtcttcc
accaaacccagagctatttgtgggaggcccaggtttttggttttgtagca
agaactgtggtcttgtatcaggtactctgacttccggctcctctcccagt
tactacttttatatcacttggaaaaattctctttctgttgagcataggag
catgtcatgtacctttaatctcaggtctaagaagcccgaggcatgaggat
tgcctcaagttcaaagtcagctcaagtcacattgtaagtaccagaccatc
cagggatgcattataaaatactgtttaagaaaaaaaaaatcactctcagg
tcaaaatggcgggccgatctgctgtttcagcatcaagcaagtggctggat
ggttttcgaaagtggtattataatgctgcaggattcaataaactggggtt
aatgcgagatgatacactacaagaaactgaagatgtaaaagaagccataa
gaaggcttcctgaggacctttataatgacaggatttttcgaattaagaga
gccctggacctgactatgatgcatcagatcttgcctaagatccgtgacaa
atatgaggagacaattctacctgaccctatctaaagagttattcgggaag
aaagaagagagagtgggcaagagtgatctttagtagatctgtggatgtgc
tggtctccccaactttacagttatttcaaccaaatcacattaagaatatt
tgttctatctatgccac
gaattcattaattatcgtgttcatacatccatctttacatgaagtaaggc
ttcaaatttagacatctgatttcctgtaagaagcttgaggtatgactggg
gggaagttctataaaacaataaagtatgatatagagtaaaacagaatcaa
atacaaaatgcttaagggaaaaaaagagaataagtacttttggtaaatgg
aaccagtgtgtgaagatgaccataaggtttccaatttctggatctacaac
aagggccttatttgatgactagcaaatacatccatgcatatccataactg
ctacactagtcacttagtaggcatctcagtcctcagatcaactgccatgc
tatagcagtgcttgtataaagataatattatttaaaagtccaagagtaca
gccaggcagtggcggtgcatccctttaatcctagcacttgggaggcagag
gcaggtggatttctgagtttgaggccagcctggtctacagagtgagttcc
aggacagccaggactacacagagaaaccctgtctcgaaaaaaaaacaaaa
taaaacaaaaaaagcccaagagtaatgatactggaggttttattatagta
tattgttgtaaatgttatgaattctgttgtttgtctcttactgtgcttaa
cttacaaattaccctttatcttagctatatatgtatagggaaaaataatg
tatacaaggtccattacttccatgtcacatcatctcagcctacctcggaa
taatattttgcacagttaagaagacttggtttcaagtccagcatttcaaa
aggcagaggcagatagatctctgttgagcttcaaggccagcatgatctaa
atagtaaagttccaggccagccaggggctacctagtagagcccatctcaa
ataaccaaacaacttattatattattctacctgaccctccttgcaatctt
ataagttatactcatagctgattctattcctgcttaaaatgcaaaataaa
gttgctgggatttttctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_172855337_172856480
seq2: B6Ng01-109B20.b_46_1162 (reverse)

seq1  GTGGCATAGGTAGAACAAATAATTCTTAAATTGTGATTTGGGTTGAAATA  50
      ||||||||| |||||||||| ||||||||  |||||||| ||||||||||
seq2  GTGGCATAGATAGAACAAAT-ATTCTTAA--TGTGATTT-GGTTGAAATA  46

seq1  ACTTTGTAAAAGTATGGTGAGACCAGGCACATCCACAGATCTTAACTAAA  100
      ||| |   ||||| ||| ||||||| ||||||||||||||||  ||| ||
seq2  ACTGT---AAAGT-TGGGGAGACCA-GCACATCCACAGATCT--ACT-AA  88

seq1  AGATCACTTCTTTGCCCACTCTTCTCTTTCTTTTCTTTCCCGAATAACCT  150
      ||||||||   |||||||||| |||| ||||||   ||||||||||| ||
seq2  AGATCACT--CTTGCCCACTC-TCTC-TTCTTT--CTTCCCGAATAA-CT  131

seq1  CTTTTAGATAGGGTTCAAGGTAGAATTTGTCCTCCTCATATTTTGTCCAC  200
      | ||||||||||||   |||||||| |||| ||||||||| ||||| |||
seq2  C-TTTAGATAGGGT--CAGGTAGAA-TTGT-CTCCTCATA-TTTGT-CAC  174

seq1  GGATCCTTAGGCAAGATCTGATGCATCATAGTCAGGTCCAGGGCTCTCTT  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAT-CTTAGGCAAGATCTGATGCATCATAGTCAGGTCCAGGGCTCTCTT  223

seq1  AATTCGAAAAATCCTGTCATTATAAAGGTCCTCAGGAAGCCTTCTTATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGAAAAATCCTGTCATTATAAAGGTCCTCAGGAAGCCTTCTTATGG  273

seq1  CTTCTTTTACATCTTCAGTTTCTTGTAGTGTATCATCTCGCATTAACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTACATCTTCAGTTTCTTGTAGTGTATCATCTCGCATTAACCCC  323

seq1  AGTTTATTGAATCCTGCAGCATTATAATACCACTTTCGAAAACCATCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTGAATCCTGCAGCATTATAATACCACTTTCGAAAACCATCCAG  373

seq1  CCACTTGCTTGATGCTGAAACAGCAGATCGGCCCGCCATTTTGACCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGCTTGATGCTGAAACAGCAGATCGGCCCGCCATTTTGACCTGAG  423

seq1  AGTGATTTTTTTTTTCTTAAACAGTATTTTATAATGCATCCCTGGATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTTTTTTTTCTTAAACAGTATTTTATAATGCATCCCTGGATGGT  473

seq1  CTGGTACTTACAATGTGACTTGAGCTGACTTTGAACTTGAGGCAATCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACTTACAATGTGACTTGAGCTGACTTTGAACTTGAGGCAATCCTC  523

seq1  ATGCCTCGGGCTTCTTAGACCTGAGATTAAAGGTACATGACATGCTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCGGGCTTCTTAGACCTGAGATTAAAGGTACATGACATGCTCCTA  573

seq1  TGCTCAACAGAAAGAGAATTTTTCCAAGTGATATAAAAGTAGTAACTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAACAGAAAGAGAATTTTTCCAAGTGATATAAAAGTAGTAACTGGG  623

seq1  AGAGGAGCCGGAAGTCAGAGTACCTGATACAAGACCACAGTTCTTGCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCCGGAAGTCAGAGTACCTGATACAAGACCACAGTTCTTGCTAC  673

seq1  AAAACCAAAAACCTGGGCCTCCCACAAATAGCTCTGGGTTTGGTGGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAAACCTGGGCCTCCCACAAATAGCTCTGGGTTTGGTGGAAGA  723

seq1  CCATGCATAAGAAAGGATTGTTGTAGTGTTTGGATAACAGCAATAACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATAAGAAAGGATTGTTGTAGTGTTTGGATAACAGCAATAACAAA  773

seq1  GTGTCAGGGGCAGCCACTGGGGATCCAACAAGGCTTCTTTCAGAAGATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGGGGCAGCCACTGGGGATCCAACAAGGCTTCTTTCAGAAGATGC  823

seq1  TCTCAAGATGGAGTCTTTAAGGATACTTAGATGCTTGTAAAGGGGGAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGATGGAGTCTTTAAGGATACTTAGATGCTTGTAAAGGGGGAGGG  873

seq1  GACTGGGGAGTCATGGCAGAGGTCATTTCAGATGGAGCTAACAATATAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGGAGTCATGGCAGAGGTCATTTCAGATGGAGCTAACAATATAAG  923

seq1  CAAATCTCGGAGGCAGATAGGAATCTGGGCTGTGAATGGAAATGCAGGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTCGGAGGCAGATAGGAATCTGGGCTGTGAATGGAAATGCAGGCT  973

seq1  CATTGAGTTTTGTGAGAGTGGAAGTGGGAAGGCTTTGGGTATGCCAAAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGTTTTGTGAGAGTGGAAGTGGGAAGGCTTTGGGTATGCCAAAGA  1023

seq1  GGCTGAGGGGGTTTAGTGGGTACCAGGTTTGGGGTTTTATGTGCCACAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGGGGTTTAGTGGGTACCAGGTTTGGGGTTTTATGTGCCACAAC  1073

seq1  AAGAGCTGGAGTTTTAGAAGTCACTCCGGATGTAGAGAGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGGAGTTTTAGAAGTCACTCCGGATGTAGAGAGAATTC  1117

seq1: chr1_172719462_172720488
seq2: B6Ng01-109B20.g_68_1092

seq1  GAATTCATTAATTATCGTGTTCATACATCCATCTTTACATGAAGTAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATTATCGTGTTCATACATCCATCTTTACATGAAGTAAGGC  50

seq1  TTCAAATTTAGACATCTGATTTCCTGTAAGAAGCTTGAGGTATGACTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTTAGACATCTGATTTCCTGTAAGAAGCTTGAGGTATGACTGGG  100

seq1  GGGAAGTTCTATAAAACAATAAAGTATGATATAGAGTAAAACAGAATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTTCTATAAAACAATAAAGTATGATATAGAGTAAAACAGAATCAA  150

seq1  ATACAAAATGCTTAAGGGAAAAAAAGAGAATAAGTACTTTTGGTAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAATGCTTAAGGGAAAAAAAGAGAATAAGTACTTTTGGTAAATGG  200

seq1  AACCAGTGTGTGAAGATGACCATAAGGTTTCCAATTTCTGGATCTACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTGTGTGAAGATGACCATAAGGTTTCCAATTTCTGGATCTACAAC  250

seq1  AAGGGCCTTATTTGATGACTAGCAAATACATCCATGCATATCCATAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCTTATTTGATGACTAGCAAATACATCCATGCATATCCATAACTG  300

seq1  CTACACTAGTCACTTAGTAGGCATCTCAGTCCTCAGATCAACTGCCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTAGTCACTTAGTAGGCATCTCAGTCCTCAGATCAACTGCCATGC  350

seq1  TATAGCAGTGCTTGTATAAAGATAATATTATTTAAAAGTCCAAGAGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAGTGCTTGTATAAAGATAATATTATTTAAAAGTCCAAGAGTACA  400

seq1  GCCAGGCAGTGGCGGTGCATCCCTTTAATCCTAGCACTTGGGAGGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCAGTGGCGGTGCATCCCTTTAATCCTAGCACTTGGGAGGCAGAG  450

seq1  GCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCC  500

seq1  AGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAAAAAACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAGGACTACACAGAGAAACCCTGTCTCGAAAAAAAAACAAAA  550

seq1  TAAAACAAAAAAAGCCCAAGAGTAATGATACTGGAGGTTTTATTATAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAAAAAAGCCCAAGAGTAATGATACTGGAGGTTTTATTATAGTA  600

seq1  TATTGTTGTAAATGTTATGAATTCTGTTGTTTGTCTCTTACTGTGCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGTAAATGTTATGAATTCTGTTGTTTGTCTCTTACTGTGCTTAA  650

seq1  CTTACAAATTACCCTTTATCTTAGCTATATATGTATAGGGAAAAATAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAATTACCCTTTATCTTAGCTATATATGTATAGGGAAAAATAATG  700

seq1  TATACAAGGTCCATTACTTCCATGTCACATCATCTCAGCCTACCTCGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAGGTCCATTACTTCCATGTCACATCATCTCAGCCTACCTCGGAA  750

seq1  TAATA-TTTGCACAG-TAAGAAGACTTAGCTTCAAGTCCAGCA-TTCAAA  797
      ||||| ||||||||| ||||||||||| | ||||||||||||| ||||||
seq2  TAATATTTTGCACAGTTAAGAAGACTTGGTTTCAAGTCCAGCATTTCAAA  800

seq1  AGGCAGAGGCAGATAGATCTCTGTTGAGC-TCAAGGCCAGCATGATCTAA  846
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGCAGAGGCAGATAGATCTCTGTTGAGCTTCAAGGCCAGCATGATCTAA  850

seq1  ATAGT-AAGTTCCAGGCCAGCCA-GGGCTACCTAGTAAGAG-CCATCTCA  893
      ||||| ||||||||||||||||| |||||||||||| |||| ||||||||
seq2  ATAGTAAAGTTCCAGGCCAGCCAGGGGCTACCTAGT-AGAGCCCATCTCA  899

seq1  AATAAACAAACAACTTATTTATATAATTCTACCTGACCCTCCCTTTGCAT  943
      ||||| ||||||||||| |||||| |||||||||||||||||  ||||| 
seq2  AATAACCAAACAACTTA-TTATATTATTCTACCTGACCCTCC--TTGCAA  946

seq1  TCTTATAAGTTATAACTTCATAGCTGATTCTATTCCTGCTTTAAAAATGC  993
      ||||||||||||||   ||||||||||||||||||||||||  |||||||
seq2  TCTTATAAGTTATA--CTCATAGCTGATTCTATTCCTGCTT--AAAATGC  992

seq1  AAAAATAAAAGTTGCTGGGA-TTCTCTCTCTCTCT  1027
      ||||   ||||||||||||| || |||||||||||
seq2  AAAA--TAAAGTTGCTGGGATTTTTCTCTCTCTCT  1025