BAC Information

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BAC

Clone NameB6Ng01-109E01
Chromosome1 (Build37)
Map Location 121,556,101 - 121,677,328
singlet/doubletdoublet
Overlap genePtpn4
Upstream geneTcfcp2l1, LOC100041753, Gli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5
Downstream geneLOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109E01.bB6Ng01-109E01.g
ACCDH916209DH916210
length1,1621,069
definitionDH916209|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E01, 5' end.DH916210|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,556,101 - 121,557,298)(121,676,249 - 121,677,328)
sequence
gaattctgagccttatctgtggcaattctacccgaggggactgcatggca
acacctcaaaattccataaactaccctgaacatattcagttttcactcgt
cgttcagagcaaagcacaaaatggtcaaccatgtgagtaataggttttga
gtgactttttaaaacataaagtgcagtagtgctgaagttcttgacgtctt
tttgagttcttcactttttgtgtgagaggccatttcttgcaagcagtatt
atggcacagtgaacataacaaaatcagtttcccagtacttgttccaacct
ttttgttttatttatttgatgatgttgttaatggtttaacaaatccttct
tcataaactttcagaatagcttcacatacaaatctgtattgactctgaaa
aacacaaggagaaaaaaccagaatcactgcaacaaagtccaaaaaaccaa
aaactaacatctcactcatcaagcttattaaaaaacttaaaacatgaaac
agaacggagttagaagttttaccaatgggtaaaaagttaagaaaactcaa
aaaaaccagaaactctcacatgatattttcttggcaaaacccaagacact
gctgataggaatgttaaaatactgaaactataaagagaaatttgaaaata
tctaataaaataatattattttacctttggaacaaacattcttacttcca
gaaaactcaattcaaaagataaattagaaaaaaaaaaccctgaaaatata
tattcacttctttaaaataaaaaagtggaaaccatttaagttgccatcaa
tttgctatgcagataaggctgtccttaaactcacaaaggtcctccagagt
cttgagtgctgggattaaaggcacataaacaatgataagtgacagactat
tctgatcagtgagaacaagcacaggatttcagatagagaggttggaagac
tgaagcaagagctccataagttcagccagcataatctacacagtgaacac
cagaacagctgtttcagagacaggaaatgaaaaataaaaacaaaacaaca
aatcaatccatacaacccctaaagcagagctggggagaggctcacaggtg
agcaccttgttgacagaatgagacttcgactaatgctcagttcacatgta
aaacctgggcat
gaattcattaaaaatgcaaagaacatctaaatcttttgttttacagccaa
tacagaatcttatctcactgtctcttgagcatctttcttgcttacataca
gataagctttgggtttttgaagtttgtaaccttaaacatttatcacttta
gcttttgctattatatacttggtttggttagatgatttgttttgttcttt
tgtcttttgttttttttctctttgtcttttgaacagggtgtcatcatgta
gaccaagcatcatgcttgcttagaacccttaatcttgtctcagtttctac
tgctgggttgtaggtgtgctctgccactgatttaatataatatacaataa
taatctgtactaaatatattttattgaggaaaactgaattatataatatt
tattatgcataattttaaaagtagttaaggttcatttatcaccatgttgt
taagtttatgattcttgtgcatttccctttttcgtttctttttctgcatt
cagttagttacaatatctgtcagtaggacaaagattagattatagataac
tgttagcttgagcttccttcaggtttttagtttgcattatggacatactt
tgttggttcctctctttgtgattttcaaactttggattacatgaagatta
cacaggaggagacatagacaggtcacatagaagatgggtcattttttttt
aaaccaatttgtgatttggcataagtggctagtatacttgcttatatttc
aaatgttagtgttctgttttcttttgaaagatgtgtttcttctgtcatac
tttatagactcttatttctgattgtacacatttctttggtagcctaatga
gtgtccttagtagtgatactgggctctgtcttaactttttttgggagaag
agtgacagaagaactcagaatcagaatatttcagaagaagcagcagtata
ttaagaaatccaggtttcaagtggaccgtacaagaatgctaaatttgaga
ctccgtgaaatttcatttacttatgctgtgaaagaaagatcggctttaag
catacatggaacatgaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_121556101_121557298
seq2: B6Ng01-109E01.b_49_1210

seq1  GAATTCTGAGCCTTATCTGTGGCAATTCTACCCGAGGGGACTGCATGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCCTTATCTGTGGCAATTCTACCCGAGGGGACTGCATGGCA  50

seq1  ACACCTCAAAATTCCATAAACTACCCTGAACATATTCAGTTTTCACTCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCAAAATTCCATAAACTACCCTGAACATATTCAGTTTTCACTCGT  100

seq1  CGTTCAGAGCAAAGCACAAAATGGTCAACCATGTGAGTAATAGGTTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCAGAGCAAAGCACAAAATGGTCAACCATGTGAGTAATAGGTTTTGA  150

seq1  GTGACTTTTTAAAACATAAAGTGCAGTAGTGCTGAAGTTCTTGACGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTTTTAAAACATAAAGTGCAGTAGTGCTGAAGTTCTTGACGTCTT  200

seq1  TTTGAGTTCTTCACTTTTTGTGTGAGAGGCCATTTCTTGCAAGCAGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTCTTCACTTTTTGTGTGAGAGGCCATTTCTTGCAAGCAGTATT  250

seq1  ATGGCACAGTGAACATAACAAAATCAGTTTCCCAGTACTTGTTCCAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACAGTGAACATAACAAAATCAGTTTCCCAGTACTTGTTCCAACCT  300

seq1  TTTTGTTTTATTTATTTGATGATGTTGTTAATGGTTTAACAAATCCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTATTTATTTGATGATGTTGTTAATGGTTTAACAAATCCTTCT  350

seq1  TCATAAACTTTCAGAATAGCTTCACATACAAATCTGTATTGACTCTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACTTTCAGAATAGCTTCACATACAAATCTGTATTGACTCTGAAA  400

seq1  AACACAAGGAGAAAAAACCAGAATCACTGCAACAAAGTCCAAAAAACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAGGAGAAAAAACCAGAATCACTGCAACAAAGTCCAAAAAACCAA  450

seq1  AAACTAACATCTCACTCATCAAGCTTATTAAAAAACTTAAAACATGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAACATCTCACTCATCAAGCTTATTAAAAAACTTAAAACATGAAAC  500

seq1  AGAACGGAGTTAGAAGTTTTACCAATGGGTAAAAAGTTAAGAAAACTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGGAGTTAGAAGTTTTACCAATGGGTAAAAAGTTAAGAAAACTCAA  550

seq1  AAAAACCAGAAACTCTCACATGATATTTTCTTGGCAAAACCCAAGACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAGAAACTCTCACATGATATTTTCTTGGCAAAACCCAAGACACT  600

seq1  GCTGATAGGAATGTTAAAATACTGAAACTATAAAGAGAAATTTGAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATAGGAATGTTAAAATACTGAAACTATAAAGAGAAATTTGAAAATA  650

seq1  TCTAATAAAATAATATTATTTTACCTTTGGAACAAACATTCTTACTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAAATAATATTATTTTACCTTTGGAACAAACATTCTTACTTCCA  700

seq1  GAAAACTCAATTCAAAAGATAAATTAGAAAAAAAAAACCCTGAAAATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCAATTCAAAAGATAAATTAGAAAAAAAAAACCCTGAAAATATA  750

seq1  TATTCACTTCTTTAAAATAAAAAAGTGGAAACCATTTAAGTTGCCATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTTCTTTAAAATAAAAAAGTGGAAACCATTTAAGTTGCCATCAA  800

seq1  TTTGCTATGCAGATAAGGCTGTCCTTAAACTCACAAAGGTCCTCCAGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATGCAGATAAGGCTGTCCTTAAACTCACAAAGGTCCTCCAGAGT  850

seq1  CTTGAGTGCTGGGATTAAAGGCACATAAACAATGATAAGTGACAGACTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTGCTGGGATTAAAGGCACATAAACAATGATAAGTGACAGACTAT  900

seq1  TCTGATCAGTGAGAACAAGCACAGGATTTCAGATAGAGAGGTTGGAAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCAGTGAGAACAAGCACAGGATTTCAGATAGAGAGGTTGGAAGAC  950

seq1  TGAAGCAAGAGCTCCATAAGTTCAAGGCCAGCATAATCTACACAGTGAAC  1000
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  TGAAGCAAGAGCTCCATAAGTTCA--GCCAGCATAATCTACACAGTGAAC  998

seq1  ACCAGAACAGCCTGTTTCAAGAAGACAAGGAAAATGAAAAAAAAAAAAAA  1050
      |||||||||| ||||||||   |||||  | |||||||||| ||||| | 
seq2  ACCAGAACAG-CTGTTTCA--GAGACA--GGAAATGAAAAATAAAAACA-  1042

seq1  CAAAAAACAAAACAAAACCAAACCCATACAACCACAAAAAGGCAAGGAAG  1100
       ||| |||||| |       || |||||||||| | |||       | ||
seq2  -AAACAACAAATC-------AATCCATACAACCCCTAAA-------GCAG  1077

seq1  GGCTGGGGAGAGGGCTCAGCAGGTGAGCATACTTGTTGAACAAGAATGAA  1150
       |||||||||| |||||| ||||||||||  ||||||||   |||||| |
seq2  AGCTGGGGAGA-GGCTCA-CAGGTGAGCA-CCTTGTTGA--CAGAATG-A  1121

seq1  GACTTCGACTAATAGCTCAGTCACCCATGTAAAAAAAACACTGGGCAT  1198
      ||||||||||||| |||||||  | |||||||||      ||||||||
seq2  GACTTCGACTAAT-GCTCAGT-TCACATGTAAAA-----CCTGGGCAT  1162

seq1: chr1_121676249_121677328
seq2: B6Ng01-109E01.g_65_1133 (reverse)

seq1  ACTTCATAGTCTCATGTATTGCTTAAAGCCGATCTTTCCTATCACAGCAT  50
      ||||||| ||  |||||| |||||||||||||||||| || |||||||||
seq2  ACTTCAT-GTTCCATGTA-TGCTTAAAGCCGATCTTT-CTTTCACAGCAT  47

seq1  TACAGTAAAATGAAATTTCACGAGAGTCCTCAAATTTAGCATTCTTGTAC  100
         ||| ||||||||||||||| |||| ||||||||||||||||||||||
seq2  --AAGT-AAATGAAATTTCACG-GAGT-CTCAAATTTAGCATTCTTGTAC  92

seq1  GGTCACTTTGAAAACCTTGAATTTCTGTATATACTGCTGCTTCTTTCTGA  150
      ||||   ||||||  | || ||||||  ||||||||||||||| ||||||
seq2  GGTCCACTTGAAA--CCTGGATTTCTTAATATACTGCTGCTTC-TTCTGA  139

seq1  AATATTCTGATTCTTGAGTTCTTCTGTCACTC-TCTCCCAAAAAAAGTTA  199
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  AATATTCTGATTC-TGAGTTCTTCTGTCACTCTTCTCCCAAAAAAAGTTA  188

seq1  AGACAGAGCCCAGTATCACTACTAAGGACACTCATTAGGCTACCAAAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGCCCAGTATCACTACTAAGGACACTCATTAGGCTACCAAAGAA  238

seq1  ATGTGTACAATCAGAAATAAGAGTCTATAAAGTATGACAGAAGAAACACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACAATCAGAAATAAGAGTCTATAAAGTATGACAGAAGAAACACA  288

seq1  TCTTTCAAAAGAAAACAGAACACTAACATTTGAAATATAAGCAAGTATAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAAAAGAAAACAGAACACTAACATTTGAAATATAAGCAAGTATAC  338

seq1  TAGCCACTTATGCCAAATCACAAATTGGTTTAAAAAAAAATGACCCATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACTTATGCCAAATCACAAATTGGTTTAAAAAAAAATGACCCATCT  388

seq1  TCTATGTGACCTGTCTATGTCTCCTCCTGTGTAATCTTCATGTAATCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGACCTGTCTATGTCTCCTCCTGTGTAATCTTCATGTAATCCAA  438

seq1  AGTTTGAAAATCACAAAGAGAGGAACCAACAAAGTATGTCCATAATGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAAAATCACAAAGAGAGGAACCAACAAAGTATGTCCATAATGCAA  488

seq1  ACTAAAAACCTGAAGGAAGCTCAAGCTAACAGTTATCTATAATCTAATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAACCTGAAGGAAGCTCAAGCTAACAGTTATCTATAATCTAATCT  538

seq1  TTGTCCTACTGACAGATATTGTAACTAACTGAATGCAGAAAAAGAAACGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTACTGACAGATATTGTAACTAACTGAATGCAGAAAAAGAAACGA  588

seq1  AAAAGGGAAATGCACAAGAATCATAAACTTAACAACATGGTGATAAATGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAAATGCACAAGAATCATAAACTTAACAACATGGTGATAAATGA  638

seq1  ACCTTAACTACTTTTAAAATTATGCATAATAAATATTATATAATTCAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAACTACTTTTAAAATTATGCATAATAAATATTATATAATTCAGTT  688

seq1  TTCCTCAATAAAATATATTTAGTACAGATTATTATTGTATATTATATTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAATAAAATATATTTAGTACAGATTATTATTGTATATTATATTAA  738

seq1  ATCAGTGGCAGAGCACACCTACAACCCAGCAGTAGAAACTGAGACAAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGGCAGAGCACACCTACAACCCAGCAGTAGAAACTGAGACAAGAT  788

seq1  TAAGGGTTCTAAGCAAGCATGATGCTTGGTCTACATGATGACACCCTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTTCTAAGCAAGCATGATGCTTGGTCTACATGATGACACCCTGTT  838

seq1  CAAAAGACAAAGAGAAAAAAAACAAAAGACAAAAGAACAAAACAAATCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACAAAGAGAAAAAAAACAAAAGACAAAAGAACAAAACAAATCAT  888

seq1  CTAACCAAACCAAGTATATAATAGCAAAAGCTAAAGTGATAAATGTTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAAACCAAGTATATAATAGCAAAAGCTAAAGTGATAAATGTTTAA  938

seq1  GGTTACAAACTTCAAAAACCCAAAGCTTATCTGTATGTAAGCAAGAAAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAAACTTCAAAAACCCAAAGCTTATCTGTATGTAAGCAAGAAAGA  988

seq1  TGCTCAAGAGACAGTGAGATAAGATTCTGTATTGGCTGTAAAACAAAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAGAGACAGTGAGATAAGATTCTGTATTGGCTGTAAAACAAAAGA  1038

seq1  TTTAGATGTTCTTTGCATTTTTAATGAATTC  1080
      |||||||||||||||||||||||||||||||
seq2  TTTAGATGTTCTTTGCATTTTTAATGAATTC  1069