BAC Information

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BAC

Clone NameB6Ng01-109E04
Chromosome1 (Build37)
Map Location 132,622,214 - 132,755,719
singlet/doubletdoublet
Overlap geneAA986860, Fcamr, Pigr
Upstream geneThsd7b, LOC100042745, LOC100042740, Daf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1
Downstream geneFaim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109E04.bB6Ng01-109E04.g
ACCDH916215DH916216
length5371,168
definitionDH916215|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E04, 5' end.DH916216|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,622,214 - 132,622,756)(132,754,548 - 132,755,719)
sequence
tttattgccctttttgttcttcattactgcaacagaagactcatctgaat
ttcctggctcaacatttctagaaatggatgtctgtgacacttacctgtct
tgtgattatcaacagacaactactaccatgaaatttacaaagtggaagag
tataacttggaagtggcagttggaggaggagaagaggtagaagcaggtag
catgaacatttctatcagttcccttcctccctgcaaatattgtactgaaa
tattcacccaaattgtagaccaagcttgacaaataagagttgcacatttt
gttttatgactgaaattacttcctactgaggctagcaaatcaatgtccct
tatggtctttatggaataacttcccctagagtattagtattacaggagaa
gctgatcaagttcttaaacctgcaaaatatggggcagactgaattatgta
tgaccttttgcaaatgtgaccctcccattatgttcatttaatatcaaaac
atacgatttggggaattgtttgtgtggggtggttttt
gaattcctgatctttccaagatttttaccatgaatgcgtgttggattttg
tcaaatgctttctccacatctaacgagatgatcatgtggtttttgtctct
gagtttgtttatatagtggattacattgatggatttccatatagtaagcc
atccctgtgtttgtttgtttttgaagagaaggtggcagcttataaagttc
tttaaaatccttagaatgtactcacatatatccaaaatatatctgaaagc
acagatattggtagtcagtcctcttcatctttggattaaaaagttcagta
tctcaatgagggtagtttcctaatagaaaaatgtattctgggacaagaat
aaccatctcatagcgaattgcaatgccaaacaacagggaccatgttgtag
aaccagagttgggtcaaggtaataacatcttgactagaattctatcatta
tgtagatcttgtcattaaagtagtttaaaaactcattttatttgtcctaa
ggaaagatttaggaatactggctctctattggtttacctattgtatactt
tggtcttttataagaatttgtttcatgaaattatagttttactgggagcc
aaaggaagccagtccaagttaacaacaatattagtttacataagcactta
cttatgaggcaatttggtactaagttaattatgtcaaaacaaactagaat
cacatgcacagtttatataagcatatataatatcatacataaggtatatt
ttaataaatcaagattttaaatgttattgttaattgggattattctttct
atgtcttcattgtaaaagaaaaacacaagagagatctttcagtaaacaaa
tgtctattaatttatatatggtttagccttaataagaaacagttttttta
ttacgaatactttgaagaaatcatgtgaattctatgttatccattatata
atgaaaatacaatttttataggtacatatttataatttgttttataggaa
attcttattcaaaatctatgacattaagtttatttattacttattacttg
ttggtggtttgaaaacaggattcttttgtaagcctggctgtccgagaact
tgcctcataagaacaggctgcctgaacctatcttacctcctgcctctggc
tcccgaggcgtggagtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_132622214_132622756
seq2: B6Ng01-109E04.b_48_590

seq1  GAATTCTTTATTGCCCTTTTTGTTCTTCATTACTGCAACAGAAGACTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTGCCCTTTTTGTTCTTCATTACTGCAACAGAAGACTCAT  50

seq1  CTGAATTTCCTGGCTCAACATTTCTAGAAATGGATGTCTGTGACACTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTCCTGGCTCAACATTTCTAGAAATGGATGTCTGTGACACTTAC  100

seq1  CTGTCTTGTGATTATCAACAGACAACTACTACCATGAAATTTACAAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGTGATTATCAACAGACAACTACTACCATGAAATTTACAAAGTG  150

seq1  GAAGAGTATAACTTGGAAGTGGCAGTTGGAGGAGGAGAAGAGGTAGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTATAACTTGGAAGTGGCAGTTGGAGGAGGAGAAGAGGTAGAAGC  200

seq1  AGGTAGCATGAACATTTCTATCAGTTCCCTTCCTCCCTGCAAATATTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCATGAACATTTCTATCAGTTCCCTTCCTCCCTGCAAATATTGTA  250

seq1  CTGAAATATTCACCCAAATTGTAGACCAAGCTTGACAAATAAGAGTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATATTCACCCAAATTGTAGACCAAGCTTGACAAATAAGAGTTGCA  300

seq1  CATTTTGTTTTATGACTGAAATTACTTCCTACTGAGGCTAGCAAATCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTTTTATGACTGAAATTACTTCCTACTGAGGCTAGCAAATCAAT  350

seq1  GTCCCTTATGGTCTTTATGGAATAACTTCCCCTAGAGTATTAGTATTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTATGGTCTTTATGGAATAACTTCCCCTAGAGTATTAGTATTACA  400

seq1  GGAGAAGCTGATCAAGTTCTTAAACCTGCAAAATATGGGGCAGACTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCTGATCAAGTTCTTAAACCTGCAAAATATGGGGCAGACTGAAT  450

seq1  TATGTATGACCTTTTGCAAATGTGACCCTCCCATTATGTTCATTTAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGACCTTTTGCAAATGTGACCCTCCCATTATGTTCATTTAATAT  500

seq1  CAAAACATACGATTTGGGGAATTGTTTGTGTGGGGTGGTTTTT  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATACGATTTGGGGAATTGTTTGTGTGGGGTGGTTTTT  543

seq1: chr1_132754548_132755719
seq2: B6Ng01-109E04.g_67_1234 (reverse)

seq1  TAACTCCAGCACTCTGGAGGCAGAGGCAGGAGGATAGATGAGTTCAAGGC  50
      ||||||||   ||| |||| |||||||||||||  ||||  |||||  | 
seq2  TAACTCCACGCCTCGGGAGCCAGAGGCAGGAGGTAAGATAGGTTCA--GG  48

seq1  CAGCCTGGTC-TATAGAGCAAGTTCTCAGACAGCCAGGGCTACACAAAGA  99
      ||||||| || |||   |||||||||| ||||||||||  |||| |||||
seq2  CAGCCTGTTCTTATGAGGCAAGTTCTCGGACAGCCAGGCTTACA-AAAGA  97

seq1  AACCCTGTCTCAAACAACAAACAAGTAATAAGTAAATAAATAAACTTAAT  149
      | ||   | |||||| || |||||||||||||| ||||||||||||||||
seq2  ATCCTGTTTTCAAACCACCAACAAGTAATAAGT-AATAAATAAACTTAAT  146

seq1  GTCATAGATTTTG-ATAAGAATTTCCTTATAAAACAAATTATAAATATGT  198
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  GTCATAGATTTTGAATAAGAATTTCC-TATAAAACAAATTATAAATATGT  195

seq1  ACTTATAAAAATTGTTATTTTTCATTATATAATGGATAACATAGAATTCA  248
      || ||||||||||||   ||||||||||||||||||||||||||||||||
seq2  ACCTATAAAAATTGT--ATTTTCATTATATAATGGATAACATAGAATTCA  243

seq1  CATGATTTCTTCAAAGTATTCGTAATAAAAAAACTGTTTCTTATTAAGGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTCTTCAAAGTATTCGTAATAAAAAAACTGTTTCTTATTAAGGC  293

seq1  TAAACCATATATAAATTAATAGACATTTGTTTACTG-AAGATCTCTCTTG  347
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAACCATATATAAATTAATAGACATTTGTTTACTGAAAGATCTCTCTTG  343

seq1  TGTTTTTCTTTTACAATGAAGACATAGAAAGAATAATCCCAATTAACAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTTTTACAATGAAGACATAGAAAGAATAATCCCAATTAACAAT  393

seq1  AACATTTAAAATCTTGATTTATTAAAATATACCTTATGTATGATATTATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTAAAATCTTGATTTATTAAAATATACCTTATGTATGATATTATA  443

seq1  TATGCTTATATAAACTGTGCATGTGATTCTAGTTTGTTTTGACATAATTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTATATAAACTGTGCATGTGATTCTAGTTTGTTTTGACATAATTA  493

seq1  ACTTAGTACCAAATTGCCTCATAAGTAAGTGCTTATGTAAACTAATATTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTACCAAATTGCCTCATAAGTAAGTGCTTATGTAAACTAATATTG  543

seq1  TTGTTAACTTGGACTGGCTTCCTTTGGCTCCCAGTAAAACTATAATTTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAACTTGGACTGGCTTCCTTTGGCTCCCAGTAAAACTATAATTTCA  593

seq1  TGAAACAAATTCTTATAAAAGACCAAAGTATACAATAGGTAAACCAATAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAAATTCTTATAAAAGACCAAAGTATACAATAGGTAAACCAATAG  643

seq1  AGAGCCAGTATTCCTAAATCTTTCCTTAGGACAAATAAAATGAGTTTTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAGTATTCCTAAATCTTTCCTTAGGACAAATAAAATGAGTTTTTA  693

seq1  AACTACTTTAATGACAAGATCTACATAATGATAGAATTCTAGTCAAGATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTTAATGACAAGATCTACATAATGATAGAATTCTAGTCAAGATG  743

seq1  TTATTACCTTGACCCAACTCTGGTTCTACAACATGGTCCCTGTTGTTTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACCTTGACCCAACTCTGGTTCTACAACATGGTCCCTGTTGTTTGG  793

seq1  CATTGCAATTCGCTATGAGATGGTTATTCTTGTCCCAGAATACATTTTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAATTCGCTATGAGATGGTTATTCTTGTCCCAGAATACATTTTTC  843

seq1  TATTAGGAAACTACCCTCATTGAGATACTGAACTTTTTAATCCAAAGATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGAAACTACCCTCATTGAGATACTGAACTTTTTAATCCAAAGATG  893

seq1  AAGAGGACTGACTACCAATATCTGTGCTTTCAGATATATTTTGGATATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACTGACTACCAATATCTGTGCTTTCAGATATATTTTGGATATAT  943

seq1  GTGAGTACATTCTAAGGATTTTAAAGAACTTTATAAGCTGCCACCTTCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTACATTCTAAGGATTTTAAAGAACTTTATAAGCTGCCACCTTCTC  993

seq1  TTCAAAAACAAACAAACACAGGGATGGCTTACTATATGGAAATCCATCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAACAAACAAACACAGGGATGGCTTACTATATGGAAATCCATCAA  1043

seq1  TGTAATCCACTATATAAACAAACTCAGAGACAAAAACCACATGATCATCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCCACTATATAAACAAACTCAGAGACAAAAACCACATGATCATCT  1093

seq1  CGTTAGATGTGGAGAAAGCATTTGACAAAATCCAACACGCATTCATGGTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGATGTGGAGAAAGCATTTGACAAAATCCAACACGCATTCATGGTA  1143

seq1  AAAATCTTGGAAAGATCAGGAATTC  1172
      |||||||||||||||||||||||||
seq2  AAAATCTTGGAAAGATCAGGAATTC  1168