BAC Information

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BAC

Clone NameB6Ng01-109E07
Chromosome1 (Build37)
Map Location 166,836,620 - 166,954,902
singlet/doubletdoublet
Overlap geneXcl1, 1700029M03Rik
Upstream geneKifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt
Downstream geneTbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109E07.bB6Ng01-109E07.g
ACCDH916221DH916222
length2941,071
definitionDH916221|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E07, 5' end.DH916222|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,954,610 - 166,954,902)(166,836,620 - 166,837,729)
sequence
ctagcacagtagcaagtcagtaaagtgctcttactgagccttgttaggca
gcttgtactttgtgaaaggataagggctaaagaaaaacaaaaagaaagaa
agaaaagaagaaaaaaagaaaaggcacctgagctctgttgtttttgaatt
agtttttattaaaaatttaaaaaccaatcaattatttaattatacttggc
ctttgagaagggtctcattcagaagtcctggctagaatgtgtgtgtgtgt
gtgtgtatatacatatatatgtgtgtgtgtatgtatatatatac
gaattcatgacttaaaacataaatgcatggagtctgattttgtaaccaga
ggcagacaacactggctaatgtttatgcacctgagccaccgtgattcaaa
tgccgtgtgtgtttatgtgtaatgaaatattaaacaaggccccatgaaat
cttccttatcccagtttcttcttcatatgtaaaatggattgataaatgca
cctatttcacaggactgtcacatagatcaaatcaatgatatatgtgagtg
tatgtctgtctgtaacatatatgtgtgtataaataaaaccacaaataaac
aaatgtaaggtgccagaattgaatattacaaagttaaaatatgacattag
atacaagaaagaaaaatacatatgcatcctaatcttagctatcttgtgta
agtatatcaatatcttgggatatatatatatatatccaacacaacatctt
cagcaatacattttctcactaagtaatgagtttccagacaatctcatttt
ctttagtacattcttttgtaattttctaattatctacaatgagcttaaaa
gtgctagtatacagaaagcaaaaatgtaatgttctaaaatggcttacagg
aagtcacataagtataaaattcaataccgggatgcattcacaaatccaaa
gcctcctgaaaagaaacccacccaaccaactctgtttcctcatcatggag
attgtaccgtctccataaaatactttccccagcaagcgaagagcaagtaa
atattgttccaggtctaagaatgacaaagccccaactcagggaatttaca
aaagttgaagtcgagagggacagacgagtttctggatgaacctagagaga
gtgttttactcaccgcagataggaagatgatgaagctgatggttaatgtc
ttcattcggagagacattatttatatagtctgtagtactttctaacccct
ctagtggtcctgaaacagtaaggtggcctatgtccaggttcatagtcaat
ttggtacaccataattttgaccatgtgcttttgtctccaaaggtctttgt
ttggacgctactgtgccatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166954610_166954902
seq2: B6Ng01-109E07.b_54_346 (reverse)

seq1  TATATATATACATACACACACACATATATATGTATATACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATACATACACACACACATATATATGTATATACACACACACACA  50

seq1  CACACATTCTAGCCAGGACTTCTGAATGAGACCCTTCTCAAAGGCCAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATTCTAGCCAGGACTTCTGAATGAGACCCTTCTCAAAGGCCAAGT  100

seq1  ATAATTAAATAATTGATTGGTTTTTAAATTTTTAATAAAAACTAATTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAATAATTGATTGGTTTTTAAATTTTTAATAAAAACTAATTCAA  150

seq1  AAACAACAGAGCTCAGGTGCCTTTTCTTTTTTTCTTCTTTTCTTTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAGAGCTCAGGTGCCTTTTCTTTTTTTCTTCTTTTCTTTCTTTC  200

seq1  TTTTTGTTTTTCTTTAGCCCTTATCCTTTCACAAAGTACAAGCTGCCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTCTTTAGCCCTTATCCTTTCACAAAGTACAAGCTGCCTAA  250

seq1  CAAGGCTCAGTAAGAGCACTTTACTGACTTGCTACTGTGCTAG  293
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCAGTAAGAGCACTTTACTGACTTGCTACTGTGCTAG  293

seq1: chr1_166836620_166837729
seq2: B6Ng01-109E07.g_68_1138

seq1  GAATTCATGACTTAAAACATAAATGCATGGAGTCTGATTTTGTAACCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACTTAAAACATAAATGCATGGAGTCTGATTTTGTAACCAGA  50

seq1  GGCAGACAACACTGGCTAATGTTTATGCACCTGAGCCACCGTGATTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACAACACTGGCTAATGTTTATGCACCTGAGCCACCGTGATTCAAA  100

seq1  TGCCGTGTGTGTTTATGTGTAATGAAATATTAAACAAGGCCCCATGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTGTGTGTTTATGTGTAATGAAATATTAAACAAGGCCCCATGAAAT  150

seq1  CTTCCTTATCCCAGTTTCTTCTTCATATGTAAAATGGATTGATAAATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTATCCCAGTTTCTTCTTCATATGTAAAATGGATTGATAAATGCA  200

seq1  CCTATTTCACAGGACTGTCACATAGATCAAATCAATGATATATGTGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTCACAGGACTGTCACATAGATCAAATCAATGATATATGTGAGTG  250

seq1  TATGTCTGTCTGTAACATATATGTGTGTATAAATAAAACCACAAATAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGTCTGTAACATATATGTGTGTATAAATAAAACCACAAATAAAC  300

seq1  AAATGTAAGGTGCCAGAATTGAATATTACAAAGTTAAAATATGACATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAGGTGCCAGAATTGAATATTACAAAGTTAAAATATGACATTAG  350

seq1  ATACAAGAAAGAAAAATACATATGCATCCTAATCTTAGCTATCTTGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGAAAGAAAAATACATATGCATCCTAATCTTAGCTATCTTGTGTA  400

seq1  AGTATATCAATATCTTGGGATATATATATATATATCCAACACAACATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATCAATATCTTGGGATATATATATATATATCCAACACAACATCTT  450

seq1  CAGCAATACATTTTCTCACTAAGTAATGAGTTTCCAGACAATCTCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATACATTTTCTCACTAAGTAATGAGTTTCCAGACAATCTCATTTT  500

seq1  CTTTAGTACATTCTTTTGTAATTTTCTAATTATCTACAATGAGCTTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTACATTCTTTTGTAATTTTCTAATTATCTACAATGAGCTTAAAA  550

seq1  GTGCTAGTATACAGAAAGCAAAAATGTAATGTTCTAAAATGGCTTACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGTATACAGAAAGCAAAAATGTAATGTTCTAAAATGGCTTACAGG  600

seq1  AAGTCACATAAGTATAAAATTCAATACCGGGATGCATTCACAAATCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACATAAGTATAAAATTCAATACCGGGATGCATTCACAAATCCAAA  650

seq1  GCCTCCTGAAAAGAAACCCACCCAACCAACTCTGTTTCCTCATCATGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGAAAAGAAACCCACCCAACCAACTCTGTTTCCTCATCATGGAG  700

seq1  ATTGTACCGTCTCCATAAAATACTTTCCCCAGCAAGCGAAGAGCAAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACCGTCTCCATAAAATACTTTCCCCAGCAAGCGAAGAGCAAGTAA  750

seq1  ATATTGTTCCAGGTCTAAGAATGACAAAGCCCCAACTCAGGGAATTTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTCCAGGTCTAAGAATGACAAAGCCCCAACTCAGGGAATTTACA  800

seq1  AAAGTTGAAGTCGAGAGGGACAGACGAGTTTCTGGATGAACCTAGAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGAAGTCGAGAGGGACAGACGAGTTTCTGGATGAACCTAGAGAGA  850

seq1  GTGTTTTACTCACCGCAGATAGGAAGAATGATGAAGCTGATGGTTAATGT  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTGTTTTACTCACCGCAGATAGGAAG-ATGATGAAGCTGATGGTTAATGT  899

seq1  CTTCATTCAGGAGAGACATTATTTTATATTAGTCTGTAAGTACTTTCTAA  950
      |||||||| |||||||||||| |||||| |||||||| ||||||||||||
seq2  CTTCATTC-GGAGAGACATTA-TTTATA-TAGTCTGT-AGTACTTTCTAA  945

seq1  CCCCTCTAGTGGTCCTGAAACAGTAAGGTGGCCTATGTCCAGGTTCATAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTAGTGGTCCTGAAACAGTAAGGTGGCCTATGTCCAGGTTCATAG  995

seq1  TTCATTTTGTTACACCATAATTATGACCA-GTGCTTTTGTTCTCAAAGGG  1049
       ||| |||| |||||||||||| |||||| ||||||||| |||| || ||
seq2  -TCAATTTGGTACACCATAATTTTGACCATGTGCTTTTG-TCTCCAAAGG  1043

seq1  TCTTTGTTTGGACGGCTACGTGTGCATATGTGTGCCTTATTCAAACAACA  1099
      ||||||||||||||                     ||            |
seq2  TCTTTGTTTGGACG---------------------CT------------A  1060

seq1  CTGTGCCATTA  1110
      |||||||||||
seq2  CTGTGCCATTA  1071