BAC Information

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BAC

Clone NameB6Ng01-109E18
Chromosome1 (Build37)
Map Location 23,867,679 - 23,994,653
singlet/doubletdoublet
Overlap geneSmap1
Upstream geneEG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782, B3gat2
Downstream gene1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109E18.bB6Ng01-109E18.g
ACCDH916240DH916241
length1,0521,158
definitionDH916240|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E18, 5' end.DH916241|Mus musculus domesticus DNA, BAC clone: B6Ng01-109E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,867,679 - 23,868,643)(23,993,465 - 23,994,653)
sequence
gaattcaggatgtggatgtcagagcagacaactgttcactcttaccttcc
aagagcctataacagtctatcaaacactgtatttgttacatatcagcgat
atctatcacccaccatatgtatatgttacatattagctatgtcttcagtt
ttaggaatagatataagtaagaatacctattcattaagatcaatttgttt
cattataatttttttgacatggtctcaatatgtagcacagactggcctca
agttcctgcttctgtattcggctactggcatgaccatgtatatcacaccc
aagcaaagttaaactttaaccatcatcactgacttcttcctgactgtaaa
gtccatactcttcttattataccatgtaatcaaaataaccccttatgttt
ctttgacgtcaggtatttgttcacagcagccacaacagtaactaagacaa
tgagggaagagtaaactcctctaaattggaaaggaagaagtcaaaatatc
actatttgcagatgacatgatagtatatataaatgaccctaaaaattcca
ccagagaactcctaaacctgataaacagcttcagtgcagtagctggatat
aaaattaactcaaacaaatcaatggcctttctctacacaaaggataaatg
ggctgagaaagaaattagggaaacaacacccttcacaatagtcacaaatg
atataaaataccttggtgtgacgctaactaaggaagtgaaagatctgtat
gataagaacttcaagtctctgaagaaagaaattaaaggagatctcagaag
atggaaagatctcccatgctcatggattggcagaaacaatatagtaaaaa
tggctatcctgccgaaagcaatctacagattcaatgcaatccccatcaaa
ttccaactcaattcttcactgagttagaaaggtcaatttgcaaattcatc
tggaatactaaaaacctaggatagcaaaaactctctcacataaagaacct
ctggtgatcaccatgcctgacctcagctgtactacagagcaatgtgataa
ac
gaattccttccctatgtagcctcccatgcctgtgagccaatgcctactta
tttaccattgtggttttgtacaaagtggtaaatctactgggcttaacttc
cttcatctcctcacagcctgagtctccatcaccaactagaaaggtaagtt
tgtttcctttccctacagtggttcccagaaactgtcacccagccctgata
tcctacacctgaagttggcatctcagagctgagccattgggcctgtcagt
aatatcagataatcttttcactcaaaaggacattttgacagcatctatat
tgacagttgttttgatttagaaatatcggtactttaaaacttttatattg
ccctacacatgtgttgtcttaattcttttttgcaaatttactaatgaaat
tattttgtctagtaagtgtttttcaaaatatgactcagaatctttttaga
attattagtctatttctgggaaggggtgtgtgaaaaggcatgcatgccat
gtggaggtcagaggacaaattgcagaaatagttttttcccacccaccagt
caggttgcctggcttacctgcagtgtctttaaccacagagccatctcatt
gatccgggctctcctgagatttttaacaccaatatgaaaaagtaagtact
acctggagtcaggtcacatgatgtgtacctgtagtccctgagaacacagg
attgctagagcctttgagtatgggaatagcccggatgatgtcataaggct
ctgtctcaaatgaaccaacacatatacagatataggcaatagcctaggaa
gaggagggtggaccaggtctcatgagggtggactagtctggcgaatgccc
tgtattgagagaagtaaaaagctctggaggagacctggaagggactaatt
ggactactggactctgcatgttctaagaacataatgtcacaaaacattca
ctacattttcgtagtagcaagaatttcaacagtctgaactgacccacctt
atttaagatttatatttatggatgtgggtgtttgctcgtatgcagtacac
cattcctgtactagaaccacagaagtcgaaagggatgaaatctcgtaact
ggatacaccagtgcagctcgtagatgtggccgaaactaacccagatctga
aagaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_23867679_23868643
seq2: B6Ng01-109E18.b_48_1011

seq1  GAATTCAGGATGTGGATGTCAGAGCAGACAACTGTTCACTCTTACCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATGTGGATGTCAGAGCAGACAACTGTTCACTCTTACCTTCC  50

seq1  AAGAGCCTATAACAGTCTATCAAACACTGTATTTGTTACATATCAGCGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCTATAACAGTCTATCAAACACTGTATTTGTTACATATCAGCGAT  100

seq1  ATCTATCACCCACCATATGTATATGTTACATATTAGCTATGTCTTCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCACCCACCATATGTATATGTTACATATTAGCTATGTCTTCAGTT  150

seq1  TTAGGAATAGATATAAGTAAGAATACCTATTCATTAAGATCAATTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAATAGATATAAGTAAGAATACCTATTCATTAAGATCAATTTGTTT  200

seq1  CATTATAATTTTTTTGACATGGTCTCAATATGTAGCACAGACTGGCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAATTTTTTTGACATGGTCTCAATATGTAGCACAGACTGGCCTCA  250

seq1  AGTTCCTGCTTCTGTATTCGGCTACTGGCATGACCATGTATATCACACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGCTTCTGTATTCGGCTACTGGCATGACCATGTATATCACACCC  300

seq1  AAGCAAAGTTAAACTTTAACCATCATCACTGACTTCTTCCTGACTGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGTTAAACTTTAACCATCATCACTGACTTCTTCCTGACTGTAAA  350

seq1  GTCCATACTCTTCTTATTATACCATGTAATCAAAATAACCCCTTATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATACTCTTCTTATTATACCATGTAATCAAAATAACCCCTTATGTTT  400

seq1  CTTTGACGTCAGGTATTTGTTCACAGCAGCCACAACAGTAACTAAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACGTCAGGTATTTGTTCACAGCAGCCACAACAGTAACTAAGACAA  450

seq1  TGAGGGAAGAGTAAACTCCTCTAAATTGGAAAGGAAGAAGTCAAAATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAAGAGTAAACTCCTCTAAATTGGAAAGGAAGAAGTCAAAATATC  500

seq1  ACTATTTGCAGATGACATGATAGTATATATAAATGACCCTAAAAATTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGCAGATGACATGATAGTATATATAAATGACCCTAAAAATTCCA  550

seq1  CCAGAGAACTCCTAAACCTGATAAACAGCTTCAGTGCAGTAGCTGGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAACTCCTAAACCTGATAAACAGCTTCAGTGCAGTAGCTGGATAT  600

seq1  AAAATTAACTCAAACAAATCAATGGCCTTTCTCTACACAAAGGATAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAACTCAAACAAATCAATGGCCTTTCTCTACACAAAGGATAAATG  650

seq1  GGCTGAGAAAGAAATTAGGGAAACAACACCCTTCACAATAGTCACAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGAAAGAAATTAGGGAAACAACACCCTTCACAATAGTCACAAATG  700

seq1  ATATAAAATACCTTGGTGTGACGCTAACTAAGGAAGTGAAAGATCTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATACCTTGGTGTGACGCTAACTAAGGAAGTGAAAGATCTGTAT  750

seq1  GATAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGGAGATCTCAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGGAGATCTCAGAAG  800

seq1  ATGGAAAGATCTCCCATGCTCATGGATTGGCAGAAACAATATAGTAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGATCTCCCATGCTCATGGATTGGCAGAAACAATATAGTAAAAA  850

seq1  TGGCTATCCTGCCGAAAGCAATCTACAGATTCAATGCAATCCCCATCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGCTATCCTGCCGAAAGCAATCTACAGATTCAATGCAATCCCCATC-AA  899

seq1  ATTCCAACTCAATTCTTCACTGAGTTAGAAAGGTCAATTTGCAAATTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAACTCAATTCTTCACTGAGTTAGAAAGGTCAATTTGCAAATTCAT  949

seq1  CTGGAATACTAAAAA  965
      |||||||||||||||
seq2  CTGGAATACTAAAAA  964

seq1: chr1_23993465_23994653
seq2: B6Ng01-109E18.g_71_1228 (reverse)

seq1  TTATTCTTTCAGAGATCCTGGGTTTAGTTCTCAGCACCCAACTTACCCAG  50
      |||||||||||||    ||||| |||||| || || | || ||   | ||
seq2  TTATTCTTTCAGA---TCTGGG-TTAGTT-TCGGC-CACATCT--ACGAG  42

seq1  CTTGCAACTGGCTGTAACTCCAGTTTCAGGAGATCTGATGCCCTCTTCTG  100
      | ||| ||||| ||||  |||||||  | ||||| | || |||| ||| |
seq2  C-TGC-ACTGG-TGTA--TCCAGTT--ACGAGATTTCAT-CCCT-TTC-G  82

seq1  ACCTCTGTGGGTACCAGGTACAAGAATAGTGTACATGCATACAGACAAAC  150
      || ||||||| |  |  ||||| |||| |||||| |||||||   |||||
seq2  ACTTCTGTGGTT--CTAGTACAGGAATGGTGTAC-TGCATACGAGCAAAC  129

seq1  ACCCACATCCATAAA-ATAATATCTTAAATAAGTGGGGTCAGTTTCAGAC  199
      ||||||||||||||| |||| ||||||||||||  ||||||| |||||||
seq2  ACCCACATCCATAAATATAA-ATCTTAAATAAGGTGGGTCAG-TTCAGAC  177

seq1  TGTGTGAAATTCTTGGCTTACTTACCGAAAATGTAGGTGAATGTTTTGTG  249
      ||| |||||||||||   ||||   |||||||||| ||||||||||||||
seq2  TGT-TGAAATTCTTG--CTACT--ACGAAAATGTA-GTGAATGTTTTGTG  221

seq1  ACAATTTATGTTCTTAGAACAATGCAGAGTCCAGTTAGTCCAATTAGTCC  299
      |||  ||||||||||||||| ||||||||||||| |||||||||||||||
seq2  ACA--TTATGTTCTTAGAAC-ATGCAGAGTCCAG-TAGTCCAATTAGTCC  267

seq1  C-TCCAGGTCTCCTCCAGAGCTTTTTACTTCTCTC-ATACAGGGCATTCG  347
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTCCAGGTCTCCTCCAGAGCTTTTTACTTCTCTCAATACAGGGCATTCG  317

seq1  CCAGACCTAGTCCACCCTCATGAGACCTGGTCCACCCTCCTCTTCCTAGG  397
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGA-CTAGTCCACCCTCATGAGACCTGGTCCACCCTCCTCTTCCTAGG  366

seq1  CTATTGCCTATATCTGTATATGTGTTGGTTCATTTGAGACAGAGCCTTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCCTATATCTGTATATGTGTTGGTTCATTTGAGACAGAGCCTTAT  416

seq1  GACATCATCCGGGCTATTCCCATACTCAAAGGCTCTAGCAATCCTGTGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCATCCGGGCTATTCCCATACTCAAAGGCTCTAGCAATCCTGTGTT  466

seq1  CTCAGGGACTACAGGTACACATCATGTGACCTGACTCCAGGTAGTACTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGACTACAGGTACACATCATGTGACCTGACTCCAGGTAGTACTTA  516

seq1  CTTTTTCATATTGGTGTTAAAAATCTCAGGAGAGCCCGGATCAATGAGAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCATATTGGTGTTAAAAATCTCAGGAGAGCCCGGATCAATGAGAT  566

seq1  GGCTCTGTGGTTAAAGACACTGCAGGTAAGCCAGGCAACCTGACTGGTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTGGTTAAAGACACTGCAGGTAAGCCAGGCAACCTGACTGGTGG  616

seq1  GTGGGAAAAAACTATTTCTGCAATTTGTCCTCTGACCTCCACATGGCATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAAAAACTATTTCTGCAATTTGTCCTCTGACCTCCACATGGCATG  666

seq1  CATGCCTTTTCACACACCCCTTCCCAGAAATAGACTAATAATTCTAAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTTTCACACACCCCTTCCCAGAAATAGACTAATAATTCTAAAAA  716

seq1  GATTCTGAGTCATATTTTGAAAAACACTTACTAGACAAAATAATTTCATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGAGTCATATTTTGAAAAACACTTACTAGACAAAATAATTTCATT  766

seq1  AGTAAATTTGCAAAAAAGAATTAAGACAACACATGTGTAGGGCAATATAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTTGCAAAAAAGAATTAAGACAACACATGTGTAGGGCAATATAA  816

seq1  AAGTTTTAAAGTACCGATATTTCTAAATCAAAACAACTGTCAATATAGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAAAGTACCGATATTTCTAAATCAAAACAACTGTCAATATAGAT  866

seq1  GCTGTCAAAATGTCCTTTTGAGTGAAAAGATTATCTGATATTACTGACAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAAAATGTCCTTTTGAGTGAAAAGATTATCTGATATTACTGACAG  916

seq1  GCCCAATGGCTCAGCTCTGAGATGCCAACTTCAGGTGTAGGATATCAGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATGGCTCAGCTCTGAGATGCCAACTTCAGGTGTAGGATATCAGGG  966

seq1  CTGGGTGACAGTTTCTGGGAACCACTGTAGGGAAAGGAAACAAACTTACC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGACAGTTTCTGGGAACCACTGTAGGGAAAGGAAACAAACTTACC  1016

seq1  TTTCTAGTTGGTGATGGAGACTCAGGCTGTGAGGAGATGAAGGAAGTTAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTTGGTGATGGAGACTCAGGCTGTGAGGAGATGAAGGAAGTTAA  1066

seq1  GCCCAGTAGATTTACCACTTTGTACAAAACCACAATGGTAAATAAGTAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTAGATTTACCACTTTGTACAAAACCACAATGGTAAATAAGTAGG  1116

seq1  CATTGGCTCACAGGCATGGGAGGCTACATAGGGAAGGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCTCACAGGCATGGGAGGCTACATAGGGAAGGAATTC  1158