BAC Information

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BAC

Clone NameB6Ng01-110D02
Chromosome1 (Build37)
Map Location 98,865,509 - 98,866,291
singlet/doubletsinglet
Overlap geneSlco6b1
Upstream geneGm1833, Slco4c1, EG329217
Downstream geneLOC670708, LOC623430, Slco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110D02.bB6Ng01-110D02.g
ACCDH916887DH916888
length1,0161,165
definitionDH916887|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D02, 5' end.DH916888|Mus musculus domesticus DNA, BAC clone: B6Ng01-110D02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacgcagttgaatccttctcaacagtctgttttatgggaacactt
cattaccaccattccccagctgaagagttctgaattcacgcagttgaatc
cttctcaacagtctgttttacgggaacctttatgaccttgacccgcagtt
ctggttccggaatgagggatcttccttgcgccggtgatggtaaccgtccc
aggttttcttgtcccaggtcttctcatcctgggtcttctcgtcccgggtt
tcggcaccaactcttacccgcgtttcggcaccaactcttacacgcgttct
cgcgaccggccaggaagaacgcaacaaaccggaatcttctgcggcaaaag
ctttattgcttacatcttcaggagcaagagagcaagagccagagcaagaa
caagagcaagagagagcaagaaagcaagaaaaagaacaagaacaagaaag
caagagagagagcaagagagagaaaaagaacaagaaagcaagaaagagag
aaaaagcaagaacaagagagagagaaagcaagaacaagagagagagaaag
caagaacaagagagagaaaaagcacaagaacaagaaagcaagagagagag
caagagagagaaaaagaacaagagcaagagagaaagcaagaaaaagacca
agaacaagaaagcaagagaaagaatggcaaaaccccgtaccttttaagga
gaattatcctccgcctaggatgtattactccctgattggctgcagcccat
cggcccagttgtcatcacgagaaaggcagaacacatggcgggaaaactgc
ccctgcacgtgtgcagattatgtttaccacttagaacacagctggcagcg
ccatcttataatggcaaatgtgagggcggctcccaacagtgtactaagtg
tggaaaaggataccattgagccaaagattgtcactcaattagagatatac
gaggcaggctcttgcagccaggcccctcagtggtagaaaatgagatgatg
catttcaaaaacgagt
gaattctcacatttggaataccgaatggctgagaagcacctgaaaaaatg
tttagcatccttaatcatcaggaaaatgcaaatcaaaaccgccctgagat
tccatctcacaccagtcagaatggctaagatgaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaaacttgtacaaccactctggaaatcagtctggcgattcctca
gaaaattggacataatactaccggaggatcccacaatacctctcctgggc
atatatccagaagatgttccaactggtaagaaggacacatggtccactat
gttcatatcagccttatttataatagccagaagcaggtaagaatctagat
gcctctcaacagaggaatggatacagaaaatgtggtccatttatacaatg
gagtactactcagctattaaacagaatgattttatgaaattactaggcaa
atggatggatctggagggcatcatcctgagtgaggtaactcaatcacaaa
agaactcacatgaaatgtactcactgataagtggatattagtccagatgt
tagactacctaagatataagatacaaagcacatgaaactcaagaagaacg
aaaatcaaagtgtggacactttgccccttcttagaattgggaacaaaaca
cccatggtaggaattggaggtgagacaaaaggatggactaactagagatt
accatatccgggaatctatcccataatcagcctccaaacgctgacaccat
tgcatacactagcaagattttgctgaaaggaccctgatatagctgtctct
tgtgagactatgccacgggtctagcaaacacagaaactaatgttcacagt
cagctcttggtggatcacagggtcctccatagaggagctagagaagtacc
caaggagctaatgggatctgcaccccttataagtggacacatatggacta
cagtacccccttgagcttgtgtctctagctacagatgtatcatagatggg
ctatgccgggctatcagtggaaggattggaccattggtgtgcaacttttt
atgctcgatcagggaacgctagggccaaaaagtggaatgggtcagtggaa
gtggtggagtaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_98865509_98866291
seq2: B6Ng01-110D02.b_46_827

seq1  GAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTT  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTATGGGAACACTT  50

seq1  CATTACCACCGTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAATC  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATTACCACCATTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAATC  100

seq1  CTTCTCAACAGTCTGTTTTACGGGAACACTTCATTACCATGACCCGCAGT  150
      ||||||||||||||||||||||||||| ||| || ||| |||||||||||
seq2  CTTCTCAACAGTCTGTTTTACGGGAAC-CTTTATGACCTTGACCCGCAGT  149

seq1  TCTGGTTCCGGAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTCCGGAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCC  199

seq1  CAGGTTTTCTCGTCCCGGGTCTTCTTGTCCCGGGTTTTCTCGTCCCGGGT  250
      |||||||||| ||||| ||||||                           
seq2  CAGGTTTTCTTGTCCCAGGTCTT---------------------------  222

seq1  CTCCTCGTCCCAGGTCTTCTCGTCCCGGGTTTCAGCACCAACTCTTACCC  300
         ||| |||  ||||||||||||||||||||| ||||||||||||||||
seq2  ---CTCATCCTGGGTCTTCTCGTCCCGGGTTTCGGCACCAACTCTTACCC  269

seq1  GCGTTTCGGCACCAACTCTTACCCGCGTTCGCGCGACCGGCCAGGAAAGA  350
      |||||||||||||||||||||| ||||||| ||||||||||||||||  |
seq2  GCGTTTCGGCACCAACTCTTACACGCGTTCTCGCGACCGGCCAGGAAGAA  319

seq1  CGCAACAAACCGGAATCTTCTGCGGCAAAAACTTTATTGCTTACATCTTC  400
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CGCAACAAACCGGAATCTTCTGCGGCAAAAGCTTTATTGCTTACATCTTC  369

seq1  AGGAGCCAGAGAACAAG----AGAGCAAG----AGTGCAAGAGAGAGCAA  442
      |||||| ||||| ||||    ||||||||    || ||||||||||||||
seq2  AGGAGCAAGAGAGCAAGAGCCAGAGCAAGAACAAGAGCAAGAGAGAGCAA  419

seq1  GAAAGCAAGAAAAAGAACAAGAAAGCAAGAGAGAGAAAGCAAGAAAGCAA  492
      |||||||||||||||||||||||  ||  ||| || |||  ||| |||||
seq2  GAAAGCAAGAAAAAGAACAAGAA--CA--AGAAAGCAAGAGAGAGAGCAA  465

seq1  GAGAAAGAACAAGAACAAGAAAGCAAGAGAAAGAAAAAGAACAAGAACAA  542
      |||| |||| |||||||||||||||||| | ||| ||| | |||||||||
seq2  GAGAGAGAAAAAGAACAAGAAAGCAAGAAAGAGAGAAAAAGCAAGAACAA  515

seq1  GAAAGCAAGAAA--AAGAACAAGA-ACA-AGAAAGCAAG----AGAGAGA  584
      || ||  |||||  |||||||||| | | ||||||||||    |||||||
seq2  GAGAGAGAGAAAGCAAGAACAAGAGAGAGAGAAAGCAAGAACAAGAGAGA  565

seq1  GAAAAAGAACAAGAACAAGAAAGCA------------------AGAAAAA  616
      ||||||| |||||||||||||||||                  |||||||
seq2  GAAAAAGCACAAGAACAAGAAAGCAAGAGAGAGAGCAAGAGAGAGAAAAA  615

seq1  GAACAAGAACAAGAAAGCAAGAAAAAGAAAAAGCAAGAACAAGAGAGAGA  666
      |||||||| ||||| || ||| || | ||| | ||||||||||| ||  |
seq2  GAACAAGAGCAAGAGAGAAAGCAAGAAAAAGACCAAGAACAAGAAAGCAA  665

seq1  GAAAAAGAATGGCAAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCC  716
      || |||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAGAAAGAATGGCAAAACCCCGTACCTTTTAAGGAGAATTATCCTCCGCC  715

seq1  TAGGACGTATTACTCCCTGATTGGCTGCAGCCCATCGGCCCAGTTGTCAT  766
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGTATTACTCCCTGATTGGCTGCAGCCCATCGGCCCAGTTGTCAT  765

seq1  CACGAGAAAGGCAGAAC  783
      |||||||||||||||||
seq2  CACGAGAAAGGCAGAAC  782