BAC Information

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BAC

Clone NameB6Ng01-110F01
Chromosome1 (Build37)
Map Location 66,462,127 - 66,561,016
singlet/doubletdoublet
Overlap geneMtap2, C030018G13Rik
Upstream geneLOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
Downstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110F01.bB6Ng01-110F01.g
ACCDH916971DH916972
length1,1201,130
definitionDH916971|Mus musculus domesticus DNA, BAC clone: B6Ng01-110F01, 5' end.DH916972|Mus musculus domesticus DNA, BAC clone: B6Ng01-110F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,559,884 - 66,561,016)(66,462,127 - 66,463,261)
sequence
gaattctttccatagatgaacaagcgttactgaggaatgatgctgagccc
acagtgggagggttgttgtctttgcatagctggagtttccatgctccttc
tggctgcattcagccagcatgtgcatcacagagccagaattctagttgct
ttgggtgatacaagacagttgcacaaattagtctctttgtggttgtcttt
tttttttttcctatcgcatacgttttgcatacagactacatgaaatagtg
gaaagaaattactctgcaatcatgagggatgatttcccactagtcacact
gtcaggttgacaaatgtagaaagaatactgtaatgcgggtaaggtatgaa
aaggctagtggcttctaaggacattaccatgcaccttaacatggtatgct
ggagtttctccttctttccattgtccaactggtcaagcttttctcatctg
caagttctggtagcagatgcacttggggctcagagagccacatttcagga
gtgaaacatttcttcgatgagctgatagcaatggtggttgctaacctgcc
tcaacggaatgccactcctgggggtaaagctgtctctattaaccatccaa
ctccatactgtttgcctgaaggcattctttctccagtggctagtcagagc
ccaaagaagtaaggggcttgaaagtcactttgcatcccctggtgacatct
ttgaagagtcatcctgaattcaaagaacattctataattatgtatttgct
aagggaaaaaaatgatttttagtttggatccaaattgcagcttcaataat
taatagctatgtaatcttggggaaactgttaatatttaaaactctctcct
ctttagaaacagaatcataacaatgcttttctatagagatattgtgtggg
gtagttccacaacatatcatgtccaccgtagagaaaccaaagtctaatct
ttatgcagatgtcactgctgtccctcagagccacttttttgccgattagg
atctgagtggtgactagtagacaggtagaatctgtctcacagtctcttgt
gactgctctgggtacctcaggagcactgcagctcgatgcagtagcaccct
ggaagttcactctggtgagg
gaattcattcagctgccaaaggaagagagcacagagactccggatatacc
tgccataccttctgatgtcacccagccacagcctgaagccattgtgtccg
aaccagcagaggtcccaagtgaggaagaagagatagaagctgggggagag
tatgacaaactgctcttccgctcagataccctccagatctccgacctgct
tgtttcagaaagtagggaggagtttgtggagacctgcccaggtgagctca
aaggtgtggttgagtctgtggtgaccattgaggatgattttatcactgta
gtacaaaccacaactgatgagggggagtcggggtcccacagtgtgcgctt
cgcagctccagctcagccggaggaagaaaggagaccacgccctcacgatg
aagagcttgaaatagagatggcagcagaagcccaggcagaacccaaggat
ggctctccagatgctccagctacccctgagaaagaagaggttgcgttctc
agaatataaaacagaaacttacgacgattacaaagacgagaccaccattg
atgactccattatggacgccgacagcctgtgggtggacactcaaggtgtg
cctctttttcaatcttctcccaaataagacccagtagcctagtggggaat
ttggttttcactttaaacatttaaagaatatgtataatagtctctattta
ctttacattgtgttaagtatgtgaagggttttatacatctgtcactaatg
atctcactcttcttgttgccatggtttgctttgatccgcagatgatgata
gaagcatcttgacagagcagttagaaactattcctaaagaggagagagct
gagaaggatgctcggagaccgtctctcgagaaacatagaaaagaaaagcc
ttttaaaccggggaggaggcagatttccactcctgaaagaaagtagctaa
aaggaacctagcacggtctccagggatgagtgagaggaaaaaggttcatt
ttacatcacttcttttaaaatggggcgggggtttttttttaaattatttg
gttatgcccttttggacaggcaacttggcctactggttacttataaatct
gggtcatttttttaatttccaggtgtttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66559884_66561016
seq2: B6Ng01-110F01.b_46_1165 (reverse)

seq1  CCTCACCAGAGTGACCTTTCCCAGGGTGCTACTGCATCGAGCTGCAGTGC  50
      |||||||||||||| |||  ||||||||||||||||||||||||||||||
seq2  CCTCACCAGAGTGAACTT--CCAGGGTGCTACTGCATCGAGCTGCAGTGC  48

seq1  TCCTGAGGTACCCAGAGGCAGTCAACAAAGGAGACTGGTGAGGACAGAAT  100
      |||||||||||||||| |||||| ||||  |||||| |||| |||||| |
seq2  TCCTGAGGTACCCAGA-GCAGTC-ACAA--GAGACT-GTGA-GACAGATT  92

seq1  CTAACCTGTCTAACTAAGTCACCACTCAAGATCCTAATCGGC-AAAAAGT  149
      || |||||||| ||| ||||||||||| |||||||||||||| |||||||
seq2  CT-ACCTGTCT-ACT-AGTCACCACTC-AGATCCTAATCGGCAAAAAAGT  138

seq1  GGCTCTGAGGGACAGCAGTGACATCTGCATAAAGATTAGACTTTGGTTTT  199
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGCTCTGAGGGACAGCAGTGACATCTGCATAAAGATTAGACTTTGG-TTT  187

seq1  CTCTTACGGTGGACATGATATGTTGT-GAACTACCTCACACAATATCTCT  248
      ||| |||||||||||||||||||||| |||||||| ||||||||||||||
seq2  CTC-TACGGTGGACATGATATGTTGTGGAACTACCCCACACAATATCTCT  236

seq1  ATTAGAAAAGCATTGTTATGATTCTGTTTCTAAAGAGGAGAGAGTTTTAA  298
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TAGAAAAGCATTGTTATGATTCTGTTTCTAAAGAGGAGAGAGTTTTAA  285

seq1  ATATTAACAGTTTCCCCAAGATTACATAGCTATTAATTATTGAAGCTGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACAGTTTCCCCAAGATTACATAGCTATTAATTATTGAAGCTGCA  335

seq1  ATTTGGATCCAAACTAAAAATCATTTTTTTCCCTTAGCAAATACATAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGATCCAAACTAAAAATCATTTTTTTCCCTTAGCAAATACATAATT  385

seq1  ATAGAATGTTCTTTGAATTCAGGATGACTCTTCAAAGATGTCACCAGGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATGTTCTTTGAATTCAGGATGACTCTTCAAAGATGTCACCAGGGG  435

seq1  ATGCAAAGTGACTTTCAAGCCCCTTACTTCTTTGGGCTCTGACTAGCCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGTGACTTTCAAGCCCCTTACTTCTTTGGGCTCTGACTAGCCAC  485

seq1  TGGAGAAAGAATGCCTTCAGGCAAACAGTATGGAGTTGGATGGTTAATAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGAATGCCTTCAGGCAAACAGTATGGAGTTGGATGGTTAATAG  535

seq1  AGACAGCTTTACCCCCAGGAGTGGCATTCCGTTGAGGCAGGTTAGCAACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTTTACCCCCAGGAGTGGCATTCCGTTGAGGCAGGTTAGCAACC  585

seq1  ACCATTGCTATCAGCTCATCGAAGAAATGTTTCACTCCTGAAATGTGGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCTATCAGCTCATCGAAGAAATGTTTCACTCCTGAAATGTGGCT  635

seq1  CTCTGAGCCCCAAGTGCATCTGCTACCAGAACTTGCAGATGAGAAAAGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGCCCCAAGTGCATCTGCTACCAGAACTTGCAGATGAGAAAAGCT  685

seq1  TGACCAGTTGGACAATGGAAAGAAGGAGAAACTCCAGCATACCATGTTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGTTGGACAATGGAAAGAAGGAGAAACTCCAGCATACCATGTTAA  735

seq1  GGTGCATGGTAATGTCCTTAGAAGCCACTAGCCTTTTCATACCTTACCCG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATGGTAATGTCCTTAGAAGCCACTAGCCTTTTCATACCTTACCCG  785

seq1  CATTACAGTATTCTTTCTACATTTGTCAACCTGACAGTGTGACTAGTGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGTATTCTTTCTACATTTGTCAACCTGACAGTGTGACTAGTGGG  835

seq1  AAATCATCCCTCATGATTGCAGAGTAATTTCTTTCCACTATTTCATGTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATCCCTCATGATTGCAGAGTAATTTCTTTCCACTATTTCATGTAG  885

seq1  TCTGTATGCAAAACGTATGCGATAGGAAAAAAAAAAAAGACAACCACAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGCAAAACGTATGCGATAGGAAAAAAAAAAAAGACAACCACAAA  935

seq1  GAGACTAATTTGTGCAACTGTCTTGTATCACCCAAAGCAACTAGAATTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTAATTTGTGCAACTGTCTTGTATCACCCAAAGCAACTAGAATTCT  985

seq1  GGCTCTGTGATGCACATGCTGGCTGAATGCAGCCAGAAGGAGCATGGAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTGATGCACATGCTGGCTGAATGCAGCCAGAAGGAGCATGGAAA  1035

seq1  CTCCAGCTATGCAAAGACAACAACCCTCCCACTGTGGGCTCAGCATCATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTATGCAAAGACAACAACCCTCCCACTGTGGGCTCAGCATCATT  1085

seq1  CCTCAGTAACGCTTGTTCATCTATGGAAAGAATTC  1133
      |||||||||||||||||||||||||||||||||||
seq2  CCTCAGTAACGCTTGTTCATCTATGGAAAGAATTC  1120

seq1: chr1_66462127_66463261
seq2: B6Ng01-110F01.g_64_1193

seq1  GAATTCATTCAGCTGCCAAAGGAAGAGAGCACAGAGACTCCGGATATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAGCTGCCAAAGGAAGAGAGCACAGAGACTCCGGATATACC  50

seq1  TGCCATACCTTCTGATGTCACCCAGCCACAGCCTGAAGCCATTGTGTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATACCTTCTGATGTCACCCAGCCACAGCCTGAAGCCATTGTGTCCG  100

seq1  AACCAGCAGAGGTCCCAAGTGAGGAAGAAGAGATAGAAGCTGGGGGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCAGAGGTCCCAAGTGAGGAAGAAGAGATAGAAGCTGGGGGAGAG  150

seq1  TATGACAAACTGCTCTTCCGCTCAGATACCCTCCAGATCTCCGACCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAAACTGCTCTTCCGCTCAGATACCCTCCAGATCTCCGACCTGCT  200

seq1  TGTTTCAGAAAGTAGGGAGGAGTTTGTGGAGACCTGCCCAGGTGAGCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGAAAGTAGGGAGGAGTTTGTGGAGACCTGCCCAGGTGAGCTCA  250

seq1  AAGGTGTGGTTGAGTCTGTGGTGACCATTGAGGATGATTTTATCACTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTGGTTGAGTCTGTGGTGACCATTGAGGATGATTTTATCACTGTA  300

seq1  GTACAAACCACAACTGATGAGGGGGAGTCGGGGTCCCACAGTGTGCGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAACCACAACTGATGAGGGGGAGTCGGGGTCCCACAGTGTGCGCTT  350

seq1  CGCAGCTCCAGCTCAGCCGGAGGAAGAAAGGAGACCACGCCCTCACGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCTCCAGCTCAGCCGGAGGAAGAAAGGAGACCACGCCCTCACGATG  400

seq1  AAGAGCTTGAAATAGAGATGGCAGCAGAAGCCCAGGCAGAACCCAAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTTGAAATAGAGATGGCAGCAGAAGCCCAGGCAGAACCCAAGGAT  450

seq1  GGCTCTCCAGATGCTCCAGCTACCCCTGAGAAAGAAGAGGTTGCGTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCAGATGCTCCAGCTACCCCTGAGAAAGAAGAGGTTGCGTTCTC  500

seq1  AGAATATAAAACAGAAACTTACGACGATTACAAAGACGAGACCACCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAAAACAGAAACTTACGACGATTACAAAGACGAGACCACCATTG  550

seq1  ATGACTCCATTATGGACGCCGACAGCCTGTGGGTGGACACTCAAGGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCCATTATGGACGCCGACAGCCTGTGGGTGGACACTCAAGGTGTG  600

seq1  CCTCTTTTTCAATCTTCTCCCAAATAAGACCCAGTAGCCTAGTGGGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTTCAATCTTCTCCCAAATAAGACCCAGTAGCCTAGTGGGGAAT  650

seq1  TTGGTTTTCACTTTAAACATTTAAAGAATATGTATAATAGTCTCTATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTCACTTTAAACATTTAAAGAATATGTATAATAGTCTCTATTTA  700

seq1  CTTTACATTGTGTTAAGTATGTGAAGGGTTTTATACATCTGTCACTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATTGTGTTAAGTATGTGAAGGGTTTTATACATCTGTCACTAATG  750

seq1  ATCTCACTCTTCTTGTTGCCATGGTTTGCTTTGATCCGCAGATGATGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTCTTCTTGTTGCCATGGTTTGCTTTGATCCGCAGATGATGATA  800

seq1  GAAGCATCTTGACAGAGCAGTTAGAAACTATTCCTAAAGAGGAGAGAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATCTTGACAGAGCAGTTAGAAACTATTCCTAAAGAGGAGAGAGCT  850

seq1  GAGAAGGATGCTCGGAGACCGTCTCTCGAGAAACATAGAAAAGAAAAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGATGCTCGGAGACCGTCTCTCGAGAAACATAGAAAAGAAAAGCC  900

seq1  TTTTAAAACCGGGA-GAGGCAGAATTTCCACTCCTGAAAGAAAAGTAGCT  949
      ||||||| | |||| ||||||| ||||||||||||||||| |||||||||
seq2  TTTTAAACCGGGGAGGAGGCAG-ATTTCCACTCCTGAAAG-AAAGTAGCT  948

seq1  AAAAAGGAACCTAGCACGGTCTCCAGGGATGAAGTGAGAAGGAAAAAAGG  999
       |||||||||||||||||||||||||||||| |||||||  | |||||||
seq2  -AAAAGGAACCTAGCACGGTCTCCAGGGATG-AGTGAGA--GGAAAAAGG  994

seq1  TTCATTTAACAATCACTTCTTTTAAAATGTG--CGGTGTTTTTTTTTAAA  1047
      ||||||| || |||||||||||||||||| |   || |||||||||||||
seq2  TTCATTTTAC-ATCACTTCTTTTAAAATGGGGCGGGGGTTTTTTTTTAAA  1043

seq1  TTAATTTGTTATTGCTCTTTTGACAAAGCAACTTGCCTAACTAGTTACTT  1097
      ||| || |||| ||| ||||||   | |||||||| |  ||| |||||||
seq2  TTATTTGGTTA-TGCCCTTTTGGACAGGCAACTTGGCCTACTGGTTACTT  1092

seq1  ATAAAAATCTTGTTCATTTTTTCA--TTCCAAGTGTTTGC  1135
      ||  |||||| | ||||||||| |  ||||| ||||||||
seq2  AT--AAATCTGGGTCATTTTTTTAATTTCCAGGTGTTTGC  1130