BAC Information

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BAC

Clone NameB6Ng01-110G07
Chromosome1 (Build37)
Map Location 19,052,933 - 19,176,921
singlet/doubletdoublet
Overlap geneLOC100040189, Tcfap2d, LOC100040413
Upstream geneCrisp4, EG574082, EG654460, Defb17, LOC383499, EG435611
Downstream geneTcfap2b, LOC100040198, LOC226901, Pkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110G07.bB6Ng01-110G07.g
ACCDH917027DH917028
length1,1311,124
definitionDH917027|Mus musculus domesticus DNA, BAC clone: B6Ng01-110G07, 5' end.DH917028|Mus musculus domesticus DNA, BAC clone: B6Ng01-110G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,175,785 - 19,176,921)(19,052,933 - 19,054,066)
sequence
gaattctcttacttaatggaaatatttttttctcatgtgaaacattgata
ttttgagttttcagttaaatctccccctaagtgagggtcattaccttgag
agatgtaataacatagtttctgcagacacttaatatgaatagtctttcaa
ctttggctctcctgatgccaaaaattacataatagacataggtttcctca
gaggggaaagttaaattaagggtgttgcttcctttgtgtgttctcaaaga
caggaactgacagagggtccagagggctaatggtaaaacatttattcagg
tacataggggcatatggagttctcctatttctttaaagacattattaatt
aagtaggcctggcaaggagaggctgctaagtttttaaagggatgaactat
gacagcacatgtttgttctgaaatatacagaaaattggcattccgtgttg
gctacattttaaccctgtcaacagctctgctcccagctggagacctctgc
tgacaggtgttacatcaaacctgtctggaagtctgtttttccatgtcctt
tacttatctgattattgctcccatccctaattaatctgctttcatcactg
tatcactgctcttgagtcctatctctaggcttttcttacttagtcatggt
ttttctcctgcagtactacagagcaatctgaacacattccacaactgagc
tacactccaatcttatttacttatatatttatttaaaaatttattccata
tgtatgcatgcatgcctgggtgtcagtgggtgcaccgtgtgcatcagtac
ccatggacaacagaacagggtgttgggtatcctagaactggagttgcaag
tagttgtgagtcacctgatgtaggtgagtggaacaaaacaaagatctttt
gccaaaacagtatattcttcactacagagccatttctttagtgtctgtct
gtctgtctgtctgtctgtctgtctatctatctatcttctatctatctatc
tatcgatctatctatcatcatcatcatccatccaccctccctcccaccca
aactgtgtcttgatttgggttttcatttttctatgtccatgatatttatt
tccatttcaaacactctgaattaggtagata
gaattcacttcaggaaagttggtatgaggcattaccacttaaagaggaac
cagagcttctgcccaactgtcaacctggataaattgtggacactgaccag
caaacagacatgggtcaatgctggaaaaaaagcaaaactggaggtgatgt
tgttagatcgagctactacaaagttcaggagaagggaaagctccctaagc
agcctgtcattgtgaagaccaaattcttcaatagaagagctgaaaagaag
attaaggttgttggaggtgtctgtagcctcgtggcttgaagcctctcacc
cagaaagttaatcaaatgctaacattttcaaaaaacataaaaataataat
aaaagggtgtttggaacctgaaattaggataagaaataatgatgttcagc
aaagccaggtcaggacacaaagtttgaattatcagtattggtctttttaa
tttttgtttatttccattgtttagacattgatcagtgatatttgccttta
tccacccaggctggccataaaacaaaagactgtgacatgctgtgtatagt
atacccaagagtacagtttggtaaggttttggtcacttccatgttgtgtt
ttgctctgctctctctctgctctaaaagccagatgtcaaggcacacaccc
acataatcccagcatttgtgcatctgcgagagaaactatgagttagatgc
cagtccagagtatattgtcaacatacagtttgtttttgtaaaagacaatt
gaaatgaaaatttcaagtccaaaaatctatgaatttaaatcgacagtaga
gcttgcctatcagaatattcagcctacaaataacatgggaaccaggaact
cacacagagtcttcacttcttcatctattattaggtcacttttattgatt
gattgattgattgattggtttattttatttatttatttatttacactcca
gattacacccccagtcactctctgactgtttcccatctcatatctcctcc
tactccctgtctccccaaaaatgtctccaccctcccagccacaactcact
gactcttaattccctggacctcaggctcttgagggttaggtgtatacata
tctgactgaaccagcctgtagtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_19175785_19176921
seq2: B6Ng01-110G07.b_43_1173 (reverse)

seq1  TATCTACCTAATTCA-AGTGTTTTGAAATGTAATAAAATATCATGGACAT  49
      ||||||||||||||| |||| ||||||||| ||  |||||||||||||||
seq2  TATCTACCTAATTCAGAGTG-TTTGAAATGGAAATAAATATCATGGACAT  49

seq1  AG-AAGATGATATACCCAAAATCAAGACACAGTTTGGGTGGGAGGGAGGG  98
      || || |||| | |||| ||||||||||||||||||||||||||||||||
seq2  AGAAAAATGA-AAACCC-AAATCAAGACACAGTTTGGGTGGGAGGGAGGG  97

seq1  TGGATGGATGGATGGATGGATAGATAGATAGATAGATAGATAGATAGATA  148
      ||||||||| ||| ||| ||| ||||||||||| ||||||||||||||||
seq2  TGGATGGAT-GAT-GAT-GAT-GATAGATAGATCGATAGATAGATAGATA  143

seq1  GATAGATAGATAGATAGACAGACAGACAGACAGACAGACAGACAGACACT  198
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-AGATAGATAGATAGACAGACAGACAGACAGACAGACAGACAGACACT  192

seq1  AAAGAAATGGCTCTGTAGTGAAGAATATACTGTTTTGGCAAAAGATCTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATGGCTCTGTAGTGAAGAATATACTGTTTTGGCAAAAGATCTTT  242

seq1  GTTTTGTTCCACTCACCTACATCAGGTGACTCACAACTACTTGCAACTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTCCACTCACCTACATCAGGTGACTCACAACTACTTGCAACTCC  292

seq1  AGTTCTAGGATACCCAACACCCTGTTCTGTTGTCCATGGGTACTGATGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGGATACCCAACACCCTGTTCTGTTGTCCATGGGTACTGATGCA  342

seq1  CACGGTGCACCCACTGACACCCAGGCATGCATGCATACATATGGAATAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGCACCCACTGACACCCAGGCATGCATGCATACATATGGAATAAA  392

seq1  TTTTTAAATAAATATATAAGTAAATAAGATTGGAGTGTAGCTCAGTTGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATAAATATATAAGTAAATAAGATTGGAGTGTAGCTCAGTTGTG  442

seq1  GAATGTGTTCAGATTGCTCTGTAGTACTGCAGGAGAAAAACCATGACTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGTTCAGATTGCTCTGTAGTACTGCAGGAGAAAAACCATGACTAA  492

seq1  GTAAGAAAAGCCTAGAGATAGGACTCAAGAGCAGTGATACAGTGATGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAAAGCCTAGAGATAGGACTCAAGAGCAGTGATACAGTGATGAAA  542

seq1  GCAGATTAATTAGGGATGGGAGCAATAATCAGATAAGTAAAGGACATGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTAATTAGGGATGGGAGCAATAATCAGATAAGTAAAGGACATGGA  592

seq1  AAAACAGACTTCCAGACAGGTTTGATGTAACACCTGTCAGCAGAGGTCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGACTTCCAGACAGGTTTGATGTAACACCTGTCAGCAGAGGTCTC  642

seq1  CAGCTGGGAGCAGAGCTGTTGACAGGGTTAAAATGTAGCCAACACGGAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGAGCAGAGCTGTTGACAGGGTTAAAATGTAGCCAACACGGAAT  692

seq1  GCCAATTTTCTGTATATTTCAGAACAAACATGTGCTGTCATAGTTCATCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTTTCTGTATATTTCAGAACAAACATGTGCTGTCATAGTTCATCC  742

seq1  CTTTAAAAACTTAGCAGCCTCTCCTTGCCAGGCCTACTTAATTAATAATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAACTTAGCAGCCTCTCCTTGCCAGGCCTACTTAATTAATAATG  792

seq1  TCTTTAAAGAAATAGGAGAACTCCATATGCCCCTATGTACCTGAATAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAGAAATAGGAGAACTCCATATGCCCCTATGTACCTGAATAAAT  842

seq1  GTTTTACCATTAGCCCTCTGGACCCTCTGTCAGTTCCTGTCTTTGAGAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACCATTAGCCCTCTGGACCCTCTGTCAGTTCCTGTCTTTGAGAAC  892

seq1  ACACAAAGGAAGCAACACCCTTAATTTAACTTTCCCCTCTGAGGAAACCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGGAAGCAACACCCTTAATTTAACTTTCCCCTCTGAGGAAACCT  942

seq1  ATGTCTATTATGTAATTTTTGGCATCAGGAGAGCCAAAGTTGAAAGACTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTATTATGTAATTTTTGGCATCAGGAGAGCCAAAGTTGAAAGACTA  992

seq1  TTCATATTAAGTGTCTGCAGAAACTATGTTATTACATCTCTCAAGGTAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTAAGTGTCTGCAGAAACTATGTTATTACATCTCTCAAGGTAAT  1042

seq1  GACCCTCACTTAGGGGGAGATTTAACTGAAAACTCAAAATATCAATGTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCACTTAGGGGGAGATTTAACTGAAAACTCAAAATATCAATGTTT  1092

seq1  CACATGAGAAAAAAATATTTCCATTAAGTAAGAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||
seq2  CACATGAGAAAAAAATATTTCCATTAAGTAAGAGAATTC  1131

seq1: chr1_19052933_19054066
seq2: B6Ng01-110G07.g_68_1191

seq1  GAATTCACTTCAGGAAAGTTGGTATGAGGCATTACCACTTAAAGAGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCAGGAAAGTTGGTATGAGGCATTACCACTTAAAGAGGAAC  50

seq1  CAGAGCTTCTGCCCAACTGTCAACCTGGATAAATTGTGGACACTGACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTTCTGCCCAACTGTCAACCTGGATAAATTGTGGACACTGACCAG  100

seq1  CAAACAGACATGGGTCAATGCTGGAAAAAAAGCAAAACTGGAGGTGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGACATGGGTCAATGCTGGAAAAAAAGCAAAACTGGAGGTGATGT  150

seq1  TGTTAGATCGAGCTACTACAAAGTTCAGGAGAAGGGAAAGCTCCCTAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGATCGAGCTACTACAAAGTTCAGGAGAAGGGAAAGCTCCCTAAGC  200

seq1  AGCCTGTCATTGTGAAGACCAAATTCTTCAATAGAAGAGCTGAAAAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTCATTGTGAAGACCAAATTCTTCAATAGAAGAGCTGAAAAGAAG  250

seq1  ATTAAGGTTGTTGGAGGTGTCTGTAGCCTCGTGGCTTGAAGCCTCTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGTTGTTGGAGGTGTCTGTAGCCTCGTGGCTTGAAGCCTCTCACC  300

seq1  CAGAAAGTTAATCAAATGCTAACATTTTCAAAAAACATAAAAATAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTTAATCAAATGCTAACATTTTCAAAAAACATAAAAATAATAAT  350

seq1  AAAAGGGTGTTTGGAACCTGAAATTAGGATAAGAAATAATGATGTTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGTGTTTGGAACCTGAAATTAGGATAAGAAATAATGATGTTCAGC  400

seq1  AAAGCCAGGTCAGGACACAAAGTTTGAATTATCAGTATTGGTCTTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGGTCAGGACACAAAGTTTGAATTATCAGTATTGGTCTTTTTAA  450

seq1  TTTTTGTTTATTTCCATTGTTTAGACATTGATCAGTGATATTTGCCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTATTTCCATTGTTTAGACATTGATCAGTGATATTTGCCTTTA  500

seq1  TCCACCCAGGCTGGCCATAAAACAAAAGACTGTGACATGCTGTGTATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCAGGCTGGCCATAAAACAAAAGACTGTGACATGCTGTGTATAGT  550

seq1  ATACCCAAGAGTACAGTTTGGTAAGGTTTTGGTCACTTCCATGTTGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAAGAGTACAGTTTGGTAAGGTTTTGGTCACTTCCATGTTGTGTT  600

seq1  TTGCTCTGCTCTCTCTCTGCTCTAAAAGCCAGATGTCAAGGCACACACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGCTCTCTCTCTGCTCTAAAAGCCAGATGTCAAGGCACACACCC  650

seq1  ACATAATCCCAGCATTTGTGCATCTGCGAGAGAAACTATGAGTTAGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATCCCAGCATTTGTGCATCTGCGAGAGAAACTATGAGTTAGATGC  700

seq1  CAGTCCAGAGTATATTGTCAACATACAGTTTG-TTTTGTAAAAGACAATT  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGTCCAGAGTATATTGTCAACATACAGTTTGTTTTTGTAAAAGACAATT  750

seq1  GAAATGAAAATTTCAAGTCCAAAAATCTATGAATTTAAATCGACAGTAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAAATTTCAAGTCCAAAAATCTATGAATTTAAATCGACAGTAGA  800

seq1  GCTTGCCTATCAGAATATTCAGCCTACAAATAACAT-GGAACCAGGAACT  848
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTTGCCTATCAGAATATTCAGCCTACAAATAACATGGGAACCAGGAACT  850

seq1  CACACAGAGTCTTCACTTCTTCATCTATTATTAGGTCACTTTTATTGATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGTCTTCACTTCTTCATCTATTATTAGGTCACTTTTATTGATT  900

seq1  GATTGATTGATTGATTGGTTTTATTTTATTTATTTATTTATTTACACTCC  948
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GATTGATTGATTGATTGG-TTTATTTTATTTATTTATTTATTTACACTCC  949

seq1  AGATTTTACACCCCCCAGTCCACTCTCTGACTGTTTCCCATCTCATATCT  998
      |||  ||||| |||||||| ||||||||||||||||||||||||||||||
seq2  AGA--TTACA-CCCCCAGT-CACTCTCTGACTGTTTCCCATCTCATATCT  995

seq1  CCTCCCTACTCCCCTGTCTCCACAAAGATGTCTCCA-CCTCCCAGCCACA  1047
      ||| |||||| |||||||||| |||| ||||||||| |||||||||||||
seq2  CCT-CCTACT-CCCTGTCTCCCCAAAAATGTCTCCACCCTCCCAGCCACA  1043

seq1  ACCTCACTGACCTCTAAATTCCCTGGGACCTCCAGTCTCTTGAGGGTTAG  1097
      | |||||||| |||| |||||||| |||||| ||| ||||||||||||||
seq2  A-CTCACTGA-CTCTTAATTCCCT-GGACCT-CAGGCTCTTGAGGGTTAG  1089

seq1  GTGTAT-CATATCTGACTGAACCCAGGCCTGGTAGTCC  1134
      |||||| ||||||||||||||||   |||| |||||||
seq2  GTGTATACATATCTGACTGAACC--AGCCT-GTAGTCC  1124