BAC Information

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BAC

Clone NameB6Ng01-110H02
Chromosome1 (Build37)
Map Location 133,039,068 - 133,167,683
singlet/doubletdoublet
Overlap geneLgtn, Rassf5, Ikbke
Upstream geneThsd7b, Daf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3
Downstream geneSrgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110H02.bB6Ng01-110H02.g
ACCDH917065DH917066
length2761,052
definitionDH917065|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H02, 5' end.DH917066|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,039,068 - 133,039,322)(133,166,622 - 133,167,683)
sequence
gaattcattccagagccttttaaacactaagcatgctcttgccactaaag
tatatcccaagcccctaagttcactacaggtcacagttctgtgagttgta
tcagcttcatacagttgtataaccaccaatgctatcataggtagcagagc
agggtgctctatctgtggtggtttgaatggcccctatagactcatagtgg
ccttattggaggaaatatgtcacaggggtggggggtggagttggagtggg
tttcagagactagagagcacttagac
gaattctcctctcacatgtgcaggattgccatctttttggaggctgtata
tgagcagaccaacgtgacccccaaacaccaggagtacctcttcgagggtc
acccttgtgtccttgagccaagcctctcagcccagcacatcgcccacaca
gctgccagcagccctctaactctgttcagcatgtccagcgacacacctaa
ggggctggccttcagggaccgtgagtagggccactcaggctgagtctttt
atactctggacaccctcccaaaacacgacttgttttcttagtgagtgttt
ctctggcccatagagtagagcatatttgggtttggattctatacatgcct
ctatgtggccacgtgacttgagttggtgactagacttccttgggtttctc
ccagatcctccaacagagacagggcatttagagcctttataccttcatca
gtttcggccactggtaggggtgtcttggatatttgagttgaaaggagcat
gagtccaggctgctgggaaaaagggctggaggacagagacatagattttc
tttccttaatttctaggataaatatttcttctcctttggatcatgctcag
tcctcctccgaggtgagggagtgagctttaacctctccagtcttaaggca
gggctttgaactctggagtgtagttctgggatgtggccacaaggtggcgg
taaataactgcaactttgaggatccacagggtcgacgtttggggatgctt
taaatgggagatcagcagcgactgtgtgctggggacaaggaaagataacc
taagagttgacccagtctttaaaagcaaggcccctcagacagagtctttg
tctgcagctgctctggatgtcccaaagttcgtccctaaggtgacctacag
gccgattacagcacagctaagtgagggccacccccaggagcagaaggggt
ttgacacgagaaggactaatcctgcacatctgtactttcaggggtgctgg
gcgcttgctaccagcctgtgcctggcgcgggtctgctggatagacaggcg
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133039068_133039322
seq2: B6Ng01-110H02.b_41_295

seq1  GAATTCATTCCAGAGCCTTTTAAACACTAAGCATGCTCTTGCCACTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCAGAGCCTTTTAAACACTAAGCATGCTCTTGCCACTAAAG  50

seq1  TATATCCCAAGCCCCTAAGTTCACTACAGGTCACAGTTCTGTGAGTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCCAAGCCCCTAAGTTCACTACAGGTCACAGTTCTGTGAGTTGTA  100

seq1  TCAGCTTCATACAGTTGTATAACCACCAATGCTATCATAGGTAGCAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCATACAGTTGTATAACCACCAATGCTATCATAGGTAGCAGAGC  150

seq1  AGGGTGCTCTATCTGTGGTGGTTTGAATGGCCCCTATAGACTCATAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCTCTATCTGTGGTGGTTTGAATGGCCCCTATAGACTCATAGTGG  200

seq1  CCTTATTGGAGGAAATATGTCACAGGGGTGGGGGGTGGAGTTGGAGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTGGAGGAAATATGTCACAGGGGTGGGGGGTGGAGTTGGAGTGGG  250

seq1  TTTCA  255
      |||||
seq2  TTTCA  255

seq1: chr1_133166622_133167683
seq2: B6Ng01-110H02.g_68_1119 (reverse)

seq1  AACGCCTGTCCATCCAGCAGGACCCGCGCCAGCCACAGGGCCTGGTAGCC  50
      |||||||||| |||||||| |||||||||||| ||||||  |||||||| 
seq2  AACGCCTGTCTATCCAGCA-GACCCGCGCCAGGCACAGG--CTGGTAGCA  47

seq1  AGCGCCCAGCACCCCCTGAAAAGTACAGATGTGCAGGATTAGTCCTTCCT  100
      ||||||||||| |||||| |||||||||||||||||||||||||||| ||
seq2  AGCGCCCAGCA-CCCCTG-AAAGTACAGATGTGCAGGATTAGTCCTT-CT  94

seq1  CGTGTCAAACCCCCTTCTGCCTCCTGGGGGTGGCCCCTCACCTTAGCTGT  150
      ||||||||| ||||||||| ||||||||||||| |||||| |||||||||
seq2  CGTGTCAAA-CCCCTTCTG-CTCCTGGGGGTGG-CCCTCA-CTTAGCTGT  140

seq1  GCTGTAATCGGCCTGTAGGTCAACCTTAGGGACGAACTTTGGGACATCCA  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTGTAATCGGCCTGTAGGTC-ACCTTAGGGACGAACTTTGGGACATCCA  189

seq1  GAGCAGCTGCAGACAAAGACTCTGTCTGAGGGGCC-TGCTTTTAAAGACT  249
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGCAGCTGCAGACAAAGACTCTGTCTGAGGGGCCTTGCTTTTAAAGACT  239

seq1  GGGTCAACTCTTAGGTTATCTTTCCTTGTCCCCAGCACACAGTCGCTGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAACTCTTAGGTTATCTTTCCTTGTCCCCAGCACACAGTCGCTGCT  289

seq1  GATCTCCCATTTAAAGCATCCCCAAACGTCGACCCTGTGGATCCTCAAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCCATTTAAAGCATCCCCAAACGTCGACCCTGTGGATCCTCAAAG  339

seq1  TTGCAGTTATTTACCGCCACCTTGTGGCCACATCCCAGAACTACACTCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTATTTACCGCCACCTTGTGGCCACATCCCAGAACTACACTCCA  389

seq1  GAGTTCAAAGCCCTGCCTTAAGACTGGAGAGGTTAAAGCTCACTCCCTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAAGCCCTGCCTTAAGACTGGAGAGGTTAAAGCTCACTCCCTCA  439

seq1  CCTCGGAGGAGGACTGAGCATGATCCAAAGGAGAAGAAATATTTATCCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGAGGAGGACTGAGCATGATCCAAAGGAGAAGAAATATTTATCCTA  489

seq1  GAAATTAAGGAAAGAAAATCTATGTCTCTGTCCTCCAGCCCTTTTTCCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAGGAAAGAAAATCTATGTCTCTGTCCTCCAGCCCTTTTTCCCA  539

seq1  GCAGCCTGGACTCATGCTCCTTTCAACTCAAATATCCAAGACACCCCTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGGACTCATGCTCCTTTCAACTCAAATATCCAAGACACCCCTAC  589

seq1  CAGTGGCCGAAACTGATGAAGGTATAAAGGCTCTAAATGCCCTGTCTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCCGAAACTGATGAAGGTATAAAGGCTCTAAATGCCCTGTCTCTG  639

seq1  TTGGAGGATCTGGGAGAAACCCAAGGAAGTCTAGTCACCAACTCAAGTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGATCTGGGAGAAACCCAAGGAAGTCTAGTCACCAACTCAAGTCA  689

seq1  CGTGGCCACATAGAGGCATGTATAGAATCCAAACCCAAATATGCTCTACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCCACATAGAGGCATGTATAGAATCCAAACCCAAATATGCTCTACT  739

seq1  CTATGGGCCAGAGAAACACTCACTAAGAAAACAAGTCGTGTTTTGGGAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGCCAGAGAAACACTCACTAAGAAAACAAGTCGTGTTTTGGGAGG  789

seq1  GTGTCCAGAGTATAAAAGACTCAGCCTGAGTGGCCCTACTCACGGTCCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAGAGTATAAAAGACTCAGCCTGAGTGGCCCTACTCACGGTCCCT  839

seq1  GAAGGCCAGCCCCTTAGGTGTGTCGCTGGACATGCTGAACAGAGTTAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCAGCCCCTTAGGTGTGTCGCTGGACATGCTGAACAGAGTTAGAG  889

seq1  GGCTGCTGGCAGCTGTGTGGGCGATGTGCTGGGCTGAGAGGCTTGGCTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGGCAGCTGTGTGGGCGATGTGCTGGGCTGAGAGGCTTGGCTCA  939

seq1  AGGACACAAGGGTGACCCTCGAAGAGGTACTCCTGGTGTTTGGGGGTCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACAAGGGTGACCCTCGAAGAGGTACTCCTGGTGTTTGGGGGTCAC  989

seq1  GTTGGTCTGCTCATATACAGCCTCCAAAAAGATGGCAATCCTGCACATGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCTGCTCATATACAGCCTCCAAAAAGATGGCAATCCTGCACATGT  1039

seq1  GAGAGGAGAATTC  1062
      |||||||||||||
seq2  GAGAGGAGAATTC  1052