BAC Information

Click to search

BAC

Clone NameB6Ng01-110H11
Chromosome1 (Build37)
Map Location 51,036,304 - 51,037,409
singlet/doubletsinglet
Overlap geneTmeff2
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneSdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110H11.bB6Ng01-110H11.g
ACCDH917081DH917082
length1,1701,110
definitionDH917081|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H11, 5' end.DH917082|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcagacctttgaaaaaggagctaataacaactcacctcaaac
tattccacaaaattgaaacagaaggaacactgcctaattcattctatgaa
gccacaattcctgataccaaaaccacacaaagacccaacaaagaaagaaa
acttcagaccaatttcacttatgaatatagatacaaaaaatactcaacaa
catgcttgcaaactgattctaagaacacaacaaagtcatcatttaccata
atcaaataggctttatctcagagatgcaagtttggttcaatatatgaaaa
tccaatattgtaacccactatataaacaaagtcaaaggaaaaacatttac
atgatcacttaattagatggtgaaaaagcatttgacaaaacacaacacct
cttcatgttaaaagtattgagatcaggaattcaaggcccatacataaaca
taataaaagcaatatacagcaaacaaaaggagataaagggacatacaaat
tggcaaagaagaaatcatggtatcactatttgcagagaatatgattgtat
atataagtgaccccaaaaattctaccagagaacttctacagctgataata
aaacttcagcaaaatggctgaatataaaattaactcaatcaaataagtag
ccttcctttataaaaataataaatgggctaagaaagacaatagagaaagt
ttatatgacaaaacaaatgaaaatttatataacaaaaacttcaagtctct
cacaaaagaaattaaagaagaccccagaaaatggagaggtcaccgatgat
cgtggattggtaggattaatatagtaaaaaatgtacatcctaccaaaagc
aatctacagattcacacatccccatcaaattccaacacaattctttaaag
acatggaaagagcattctcatttcacagggaaaacaaaacagaaagtata
aaaattctacatgaaatactctgggatccatctacctctagtgtactaag
agcatatgataaaactgcatagattgtcaatcaagatgtgtcatgaataa
ttaagatcagctaatccactttgacctgacttgaagaacaagtactgaca
aagagacctttaatggtcggctcacgatgatgcaagatgtcatggactgc
aggctagtcatgtctcagac
gaattccatctctactacaccagtaaactctcctctgccttgaagctaag
ggtgaaggcagtaaaggatgcacatactcctgcgcaacagtaaatgcact
agactggagtatgtcagaacatcagcttcccaccacagatgcatgtaata
acaattccattctgcactcacaactatgtactttcacatgactataagtt
gattcatctattgaacaagtgatgcaatgaaggcaaaatgccacctagcc
catcactaactgcgttcagcttttgttccctatgtggtctctgctgtact
ccctaatccaaaagactcatcacagaacaattccttgtaagtctctgatg
ccaatattttgttgccattcaccttttgtgctgatgttagtaagccccac
ttgttttgtttatcttgcataaataaaaatatactattaaaaatttagtt
gtgtaaatctcttccaaatgtaaaatcagttaacctattatattttttaa
aaaatacagacaggatagtgagacatagacattattaattataaactaca
agcttacattgaccagaaaattaatagaaactctggtgtagcaagtgcca
gacatgtcctagaaaatagggatcaatgttgaaatcatcacagttcattt
gtcttaagtttttattgtgcatcttggacaacacattcaactactccttc
caacactgtcctgtccaagactatttacaaagtttaagcaacaaacctat
gaagcagagacccgagtgtgtgtgtggtgtctcccatagtgcacaattaa
ttattccacagcaggacacagaatagcaatatcttgcctttatgatacat
ggacagttctctgcaacccactaagtttccttctggtttgactttattcc
ccaaagtgtctcagacttaaggaactggtattgttcccttcaacacagtc
cactgtctaaacagtgcctcactgtttatttttacattggctcctatgaa
aatccccagacagtaagcagatggtggtgggcagaatctttgtctctgtg
attcctttggcagccttctctttgtcttgagttccaaggtcctcattaag
tccatacgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51036304_51037409
seq2: B6Ng01-110H11.g_69_1178 (reverse)

seq1  AGCGTATGGAC-TAATGAGGACC-TGGAACTCAAGACAAAGAGAA-GCTG  47
      ||||||||||| ||||||||||| ||||||||||||||||||||| ||||
seq2  AGCGTATGGACTTAATGAGGACCTTGGAACTCAAGACAAAGAGAAGGCTG  50

seq1  CCAAGGGAATCACAGAGAC-AAGATTCTTGCCACCACCATCTGCTTACTG  96
      |||| |||||||||||||| ||||||||  ||||||||||||||||||||
seq2  CCAAAGGAATCACAGAGACAAAGATTCTGCCCACCACCATCTGCTTACTG  100

seq1  TCTGGGGATTTTCATAGGAGCCAATGTAAAAATAAACAGTGAGGCACTGT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGATTTTCATAGGAGCCAATGTAAAAATAAACAGTGAGGCACTGT  150

seq1  TTAGACAGTGGACTGTGTTGAAGGGAACAATACCAGTTCCTTAAGTCTGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGTGGACTGTGTTGAAGGGAACAATACCAGTTCCTTAAGTCTGA  200

seq1  GACACTTTGGGGAATAAAGTCAAACCAGAAGGAAACTTAGTGGGTTGCAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTTGGGGAATAAAGTCAAACCAGAAGGAAACTTAGTGGGTTGCAG  250

seq1  AGAACTGTCCATGTATCATAAAGGCAAGATATTGCTATTCTGTGTCCTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTCCATGTATCATAAAGGCAAGATATTGCTATTCTGTGTCCTGC  300

seq1  TGTGGAATAATTAATTGTGCACTATGGGAGACACCACACACACACTCGGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATAATTAATTGTGCACTATGGGAGACACCACACACACACTCGGG  350

seq1  TCTCTGCTTCATAGGTTTGTTGCTTAAACTTTGTAAATAGTCTTGGACAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTCATAGGTTTGTTGCTTAAACTTTGTAAATAGTCTTGGACAG  400

seq1  GACAGTGTTGGAAGGAGTAGTTGAATGTGTTGTCCAAGATGCACAATAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGTTGGAAGGAGTAGTTGAATGTGTTGTCCAAGATGCACAATAAA  450

seq1  AACTTAAGACAAATGAACTGTGATGATTTCAACATTGATCCCTATTTTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAGACAAATGAACTGTGATGATTTCAACATTGATCCCTATTTTCT  500

seq1  AGGACATGTCTGGCACTTGCTACACCAGAGTTTCTATTAATTTTCTGGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGTCTGGCACTTGCTACACCAGAGTTTCTATTAATTTTCTGGTC  550

seq1  AATGTAAGCTTGTAGTTTATAATTAATAATGTCTATGTCTCACTATCCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGCTTGTAGTTTATAATTAATAATGTCTATGTCTCACTATCCTG  600

seq1  TCTGTATTTTTTAAAAAATATAATAGGTTAACTGATTTTACATTTGGAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTTTTTAAAAAATATAATAGGTTAACTGATTTTACATTTGGAAG  650

seq1  AGATTTACACAACTAAATTTTTAATAGTATATTTTTATTTATGCAAGATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTACACAACTAAATTTTTAATAGTATATTTTTATTTATGCAAGATA  700

seq1  AACAAAACAAGTGGGGCTTACTAACATCAGCACAAAAGGTGAATGGCAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAGTGGGGCTTACTAACATCAGCACAAAAGGTGAATGGCAAC  750

seq1  AAAATATTGGCATCAGAGACTTACAAGGAATTGTTCTGTGATGAGTCTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTGGCATCAGAGACTTACAAGGAATTGTTCTGTGATGAGTCTTT  800

seq1  TGGATTAGGGAGTACAGCAGAGACCACATAGGGAACAAAAGCTGAACGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAGGGAGTACAGCAGAGACCACATAGGGAACAAAAGCTGAACGCA  850

seq1  GTTAGTGATGGGCTAGGTGGCATTTTGCCTTCATTGCATCACTTGTTCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGATGGGCTAGGTGGCATTTTGCCTTCATTGCATCACTTGTTCAA  900

seq1  TAGATGAATCAACTTATAGTCATGTGAAAGTACATAGTTGTGAGTGCAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAATCAACTTATAGTCATGTGAAAGTACATAGTTGTGAGTGCAGA  950

seq1  ATGGAATTGTTATTACATGCATCTGTGGTGGGAAGCTGATGTTCTGACAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATTGTTATTACATGCATCTGTGGTGGGAAGCTGATGTTCTGACAT  1000

seq1  ACTCCAGTCTAGTGCATTTACTGTTGCGCAGGAGTATGTGCATCCTTTAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTCTAGTGCATTTACTGTTGCGCAGGAGTATGTGCATCCTTTAC  1050

seq1  TGCCTTCACCCTTAGCTTCAAGGCAGAGGAGAGTTTACTGGTGTAGTAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCACCCTTAGCTTCAAGGCAGAGGAGAGTTTACTGGTGTAGTAGA  1100

seq1  GATGGAATTC  1106
      ||||||||||
seq2  GATGGAATTC  1110