BAC Information

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BAC

Clone NameB6Ng01-110K15
Chromosome6 (Build37)1 (Build37)
Map Location 18,835,451 - 18,835,968142,944,965 - 142,946,045
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110K15.bB6Ng01-110K15.g
ACCDH917225DH917226
length9361,065
definitionDH917225|Mus musculus domesticus DNA, BAC clone: B6Ng01-110K15, 5' end.DH917226|Mus musculus domesticus DNA, BAC clone: B6Ng01-110K15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,451 - 18,835,968)(142,944,965 - 142,946,045)
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttaagtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgattctca
ttcttctacacgataacaaccagttgtgccagcaccaaatgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagcatggtgattccaccagaggttcttttatccttgagaag
agtttttgctatcctaggttttttgttattccagatgaatttgcaaattg
ctccttctaattcgttgaagaattgagttggaattttgatggggattgca
ttgaatctgtagattgcttttggcaagatatagccatttttacaatgttg
atcctgccaatccatgagcatgggagatcccttccatcttctgaggatct
tttttaatttctttcttcagagacttgaagttttatcatacagatctttc
acttccttagttagagtcacgcgagatattttatat
gaattcaaatatctgcttgtctctgtctgagtctaaaattttgagggtca
ttgtacttcaagatcccaatcaaaagcctgtgtcttacagcctcaacatc
tggatcgcaggtgtgccctccatttctggattgtaattcatttcagacat
agtcaaattaacaactgcaaatagccatcacaccatataaaatacataaa
taaatgtaatataaaagctagagagttgatgaaattttttttttaatttt
ggcaggatcaagtatatatctcttttggtttttgactttgtatatgaact
gccgcacacatttccaatacctgtctctttaccatatgttttagtagttt
cattgccacaggctcctacatttataaaatatattttattattttagagt
caactgggatttataagattgtgttatctggagcgcactgttatttgtga
aattaatagacaatttgagaaagattgtagatatttaaatttttgagtgc
taaagtatagcatatgaagtgaatgaagaaatttatgtattaaaatgttc
ttcttaggtacacaagacctccagaaaacaacttactacttattgtcatc
caggagttaatagtcggtttctctatgtagttttaaaatttctttaatta
aagcaaacaatcacaccttcatcttcacttcttgaaacatttctttttta
atactaagtaattaaaaaaattaaccacacatattttgaagatctgattt
cttatagtatactgcatatatagttgattggatagctaagtaaacatgta
ataaattactagtacaactataatggatatggaattaatcaaaatgacta
tttaattcaaactcatttccacaaatggaaatgatgatatcacaacttca
gaaataggagtcagtacatttgttttgtaaaatacaaaattgtatatggg
tatagacagaattactttatttagaaatcatattagaacaaaaatcatct
cttgtaaagataaataaatgtcacccttgttgaagaatatttcatcaaat
atcaaaaatattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835451_18835968
seq2: B6Ng01-110K15.b_45_562 (reverse)

seq1  AACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCAT  50

seq1  CCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGT  100
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCAGTGGAAGAAAGACAGCATTTTCAACATTTGGTGCTGGCACAACTGGT  100

seq1  TGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGTACT  150
      ||||||| |||||||||||| |||||||||||||||||||||| ||||||
seq2  TGTTATCGTGTAGAAGAATGAGAATCGATCCATACTTATCTCCTTGTACT  150

seq1  AAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACT  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGGTCAAATCTAAGTGGATCAAGGAACTTCACTTAAAACCAGAGACACT  200

seq1  GAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAG  250

seq1  GGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAGAGA  299
      ||||||| ||||||||||||||||||||||| |||||||| || | ||||
seq2  GGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGA  300

seq1  ATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGA  349
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGA  350

seq1  CACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTA  400

seq1  CCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTC  450

seq1  AAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGGCTC  499
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAA-AAATGGGGCTC  499

seq1  AGAACTGAACAAAGAATTC  518
      |||||||||||||||||||
seq2  AGAACTGAACAAAGAATTC  518

seq1: chr1_142944965_142946045
seq2: B6Ng01-110K15.g_66_1130 (reverse)

seq1  AAAAATATTTTTTGATAATTTTGAATGAAATATTCTTCAAACAAGTGTTG  50
      ||||||| |||||||||  |||| |||||||||||||| |||||| | ||
seq2  AAAAATA-TTTTTGATA--TTTG-ATGAAATATTCTTC-AACAAG-GGTG  44

seq1  ACATTTATTTATCTTTTACAAGAGATGAATATTTGTTCTTAATATTGATT  100
      ||||||||||||| ||||||||||||| || ||||||| ||||| |||||
seq2  ACATTTATTTATC-TTTACAAGAGATG-ATTTTTGTTC-TAATA-TGATT  90

seq1  TCTAAATAAAGTAATTTCTGTCTTATAACCCATATACAATTTTGTATTTT  150
      |||||||||||||| ||||||| ||| |||||||||||||||||||||||
seq2  TCTAAATAAAGTAA-TTCTGTC-TAT-ACCCATATACAATTTTGTATTTT  137

seq1  ACAAAACAAAATGTACTGACTTCTATTTCTGAAGTTGTGATTATCATCAT  200
      ||||||| ||||||||||||| |||||||||||||||||| |||||||||
seq2  ACAAAAC-AAATGTACTGACTCCTATTTCTGAAGTTGTGA-TATCATCAT  185

seq1  TTCCATTTGTGGAAATGAGTTTTGAATTAAATAGTCATTTTGATTAATTC  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCCATTTGTGGAAATGAG-TTTGAATTAAATAGTCATTTTGATTAATTC  234

seq1  CATATCCATTATAGTTGTACTAGTAATTTATTACATGTTTACTTAGCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCATTATAGTTGTACTAGTAATTTATTACATGTTTACTTAGCTAT  284

seq1  CCAATCAACTATATATGCAGTATACTATAAGAAATCAGATCTTCAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAACTATATATGCAGTATACTATAAGAAATCAGATCTTCAAAATA  334

seq1  TGTGTGGTTAATTTTTTTAATTACTTAGTATTAAAAAAGAAATGTTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTTAATTTTTTTAATTACTTAGTATTAAAAAAGAAATGTTTCAA  384

seq1  GAAGTGAAGATGAAGGTGTGATTGTTTGCTTTAATTAAAGAAATTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAAGATGAAGGTGTGATTGTTTGCTTTAATTAAAGAAATTTTAAA  434

seq1  ACTACATAGAGAAACCGACTATTAACTCCTGGATGACAATAAGTAGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATAGAGAAACCGACTATTAACTCCTGGATGACAATAAGTAGTAAG  484

seq1  TTGTTTTCTGGAGGTCTTGTGTACCTAAGAAGAACATTTTAATACATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTGGAGGTCTTGTGTACCTAAGAAGAACATTTTAATACATAAA  534

seq1  TTTCTTCATTCACTTCATATGCTATACTTTAGCACTCAAAAATTTAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCATTCACTTCATATGCTATACTTTAGCACTCAAAAATTTAAATA  584

seq1  TCTACAATCTTTCTCAAATTGTCTATTAATTTCACAAATAACAGTGCGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAATCTTTCTCAAATTGTCTATTAATTTCACAAATAACAGTGCGCT  634

seq1  CCAGATAACACAATCTTATAAATCCCAGTTGACTCTAAAATAATAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAACACAATCTTATAAATCCCAGTTGACTCTAAAATAATAAAATA  684

seq1  TATTTTATAAATGTAGGAGCCTGTGGCAATGAAACTACTAAAACATATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATAAATGTAGGAGCCTGTGGCAATGAAACTACTAAAACATATGG  734

seq1  TAAAGAGACAGGTATTGGAAATGTGTGCGGCAGTTCATATACAAAGTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGACAGGTATTGGAAATGTGTGCGGCAGTTCATATACAAAGTCAA  784

seq1  AAACCAAAAGAGATATATACTTGATCCTGCCAAAATTAAAAAAAAAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAGAGATATATACTTGATCCTGCCAAAATTAAAAAAAAAATTT  834

seq1  CATCAACTCTCTAGCTTTTATATTACATTTATTTATGTATTTTATATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACTCTCTAGCTTTTATATTACATTTATTTATGTATTTTATATGGT  884

seq1  GTGATGGCTATTTGCAGTTGTTAATTTGACTATGTCTGAAATGAATTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCTATTTGCAGTTGTTAATTTGACTATGTCTGAAATGAATTACA  934

seq1  ATCCAGAAATGGAGGGCACACCTGCGATCCAGATGTTGAGGCTGTAAGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAAATGGAGGGCACACCTGCGATCCAGATGTTGAGGCTGTAAGAC  984

seq1  ACAGGCTTTTGATTGGGATCTTGAAGTACAATGACCCTCAAAATTTTAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTTTGATTGGGATCTTGAAGTACAATGACCCTCAAAATTTTAGA  1034

seq1  CTCAGACAGAGACAAGCAGATATTTGAATTC  1081
      |||||||||||||||||||||||||||||||
seq2  CTCAGACAGAGACAAGCAGATATTTGAATTC  1065