BAC Information

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BAC

Clone NameB6Ng01-110M22
Chromosome1 (Build37)
Map Location 138,032,186 - 138,167,140
singlet/doubletdoublet
Overlap geneKif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1
Upstream genePtpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s
Downstream gene9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110M22.bB6Ng01-110M22.g
ACCDH917327DH917328
length1,107956
definitionDH917327|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M22, 5' end.DH917328|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,166,009 - 138,167,140)(138,032,186 - 138,033,149)
sequence
gaattctcatggacacagcgggacataggcttgaggtgtggctagatggc
aattatgtgatgtattctttttacccctgtactgtgtgtgcacatcgtca
aatggtttcgttgttgttgtcgtcgttctgttccctctcctggggttatt
ctaagctgcctttgtgtttgttttatgtggagatcatgaaagtagaaagt
tcctgttgaaaagtaccttgcacctttcatatgatggtaagagagacact
agtattagttttacagtagccctcgtgttctgatggtgttacagtatttg
caagaatccttctaagtatttacattctgtatttattattcacacaagta
ttaacatttctctattagtaaggaggtgtttaaaagctgctgctgggtcc
cctgcagaccacacaagctaacccagcacatcctgtaagaggctgctgat
gaaatcagtgctggttgtctctacaccacttctgccaactcagaacaaat
cagattgtacttttaacaacagagcactttgtattgcatttaaagtgcgt
cactgtataaggtggcagaagtgagtgagtgacacgtgagtgctgccttt
ctgtatgaaagcatacagcttcctggcagctcaggaggcctttatattta
taaccgatagggaaattatatttaggatttttaaacatgcacaaagggct
acattttgatttgaaagtagcttcctgttattttacttatactgggtttt
ctttcctttgaatccttttccagtggaacagcttagattcaggcacactt
gaaatctcctctccatgatctttcttctttagcaagcataccagagtaag
ttggggggaaacttcatctcaggaaaagacttgaatgattgattgtgtgg
ccctttatgttcagtgtgtgacaactgtgtacactagtggggaagacatt
gttatagtgagagagtagtttgtttctttcatgggatatagagatgaaat
atgtacatttctctatagttgttagaagaggaacctcatgtctcatgtta
tgtatactataaaggagatggaatggaagtccctcacgtacctttctata
tagcctt
gaattcatttgcagctaatccattcattttttgactgtgaccgaacacca
taattgcttagaattttgctcagtgctgggcactgtgctcgtactatcat
gctcagctgaccaaatacttgatgctcctctcatgagcaaacacagggca
gcagggatgggggaaaaggctggatccaaacccagggcactctcctttgc
aagcacacgcttactagacagcccttgcctgcccaaactggagtctcatt
ccagcctctaattggctgagtgctgtggtcatggtcgctgcttctgttcc
ttcagatgcttcattgccctgccctgttgtggtgaaaggagatgaaggaa
atacacacagcaccatgcagatgcaccataccacacattctccaagtgtg
ccttagctgcctgtcacctccgaggcctgagctcccagatccttgctgtt
ttcttttgggtttttagaagctgctgttctcctgttctgaggtccttgtg
actgtctcctgcctgagccactctccaggcaaggatggctctagcagagg
tttctcagccttcctcacgctgcatgcaacccctttagttaatacagttc
cttatgttgtggtgaatcccacccatgaaactgtttttttttgctactcc
acagctgtaattttgctactgttatgaatcataagaagattgggggttgg
ggctctgagggctctgtagccctggggcaggcggtgacctattggatgca
ttgtccccatctctggtgggctccttcatttacctccagcttttctcgga
tatgggaaagagagtgtactatggtccctatccccaaatgcaagctacct
gtctctctctatgctaagctgtcctatttcaggagtgcacttcacagaga
gccagctgctgaaacttgcatagggaaagcagcagacagtgtgggtggaa
gggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_138166009_138167140
seq2: B6Ng01-110M22.b_47_1153 (reverse)

seq1  AAGGCTTTATAATAGAAAAGTACAGCTGAGGGACTTCCCATTCCATTCTT  50
      |||||| |   ||||||| ||||   |||||||||| |||||||| ||| 
seq2  AAGGCTAT---ATAGAAAGGTAC--GTGAGGGACTT-CCATTCCA-TCTC  43

seq1  CTTTTTAAATAAGTAAATACATAACATGAGACATGAGTTCCCTCTCTAAA  100
      |||| |     |||  ||||||||||||||||||||| | |||||   ||
seq2  CTTTAT-----AGT--ATACATAACATGAGACATGAGGTTCCTCTTCTAA  86

seq1  CAACTTAATTAGAGAAATGTACATATTTCATCTCTATATCCCATGAAAGA  150
      |||||    |||||||||||||||||||||||||||||||||||||||| 
seq2  CAACT---ATAGAGAAATGTACATATTTCATCTCTATATCCCATGAAAG-  132

seq1  AAACAAACTACTCTCTCACTTATAAACAATGTCTTCCCCACTAGTGTACA  200
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  AAACAAACTACTCTCTCAC-TAT-AACAATGTCTTCCCCACTAGTGTACA  180

seq1  CAGTTGTCACAACACTGAAACATAAAAGGGCCACACAATCAATCATTCAA  250
      |||||||||| |||||| ||||| ||||||||||||||||||||||||||
seq2  CAGTTGTCAC-ACACTG-AACAT-AAAGGGCCACACAATCAATCATTCAA  227

seq1  GTCTTTTCCTGAGAATGAAGTTTCCCCCCAACTTACTCTGGTATGCTTGC  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCCTGAG-ATGAAGTTTCCCCCCAACTTACTCTGGTATGCTTGC  276

seq1  TAAAGAAGAAAGATCATGGAGAGGAGATTTCAAGTGTGCCCTGAATCTAA  350
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAAAGAAGAAAGATCATGGAGAGGAGATTTCAAGTGTG-CCTGAATCTAA  325

seq1  GCTGTTCCACTGGAAAAGGATTCAAAGGAAAGAAAACCCAGTATAAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCCACTGGAAAAGGATTCAAAGGAAAGAAAACCCAGTATAAGTAA  375

seq1  AATAACAGGAAGCTACTTTCAAATCAAAATGTAGCCCTTTGTGCATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGGAAGCTACTTTCAAATCAAAATGTAGCCCTTTGTGCATGTTT  425

seq1  AAAAATCCTAAATATAATTTCCCTATCGGTTATAAATATAAAGGCCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCTAAATATAATTTCCCTATCGGTTATAAATATAAAGGCCTCCT  475

seq1  GAGCTGCCAGGAAGCTGTATGCTTTCATACAGAAAGGCAGCACTCACGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCCAGGAAGCTGTATGCTTTCATACAGAAAGGCAGCACTCACGTG  525

seq1  TCACTCACTCACTTCTGCCACCTTATACAGTGACGCACTTTAAATGCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACTCACTTCTGCCACCTTATACAGTGACGCACTTTAAATGCAAT  575

seq1  ACAAAGTGCTCTGTTGTTAAAAGTACAATCTGATTTGTTCTGAGTTGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGCTCTGTTGTTAAAAGTACAATCTGATTTGTTCTGAGTTGGCA  625

seq1  GAAGTGGTGTAGAGACAACCAGCACTGATTTCATCAGCAGCCTCTTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGTGTAGAGACAACCAGCACTGATTTCATCAGCAGCCTCTTACAG  675

seq1  GATGTGCTGGGTTAGCTTGTGTGGTCTGCAGGGGACCCAGCAGCAGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCTGGGTTAGCTTGTGTGGTCTGCAGGGGACCCAGCAGCAGCTTT  725

seq1  TAAACACCTCCTTACTAATAGAGAAATGTTAATACTTGTGTGAATAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACCTCCTTACTAATAGAGAAATGTTAATACTTGTGTGAATAATAA  775

seq1  ATACAGAATGTAAATACTTAGAAGGATTCTTGCAAATACTGTAACACCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAATGTAAATACTTAGAAGGATTCTTGCAAATACTGTAACACCAT  825

seq1  CAGAACACGAGGGCTACTGTAAAACTAATACTAGTGTCTCTCTTACCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACGAGGGCTACTGTAAAACTAATACTAGTGTCTCTCTTACCATC  875

seq1  ATATGAAAGGTGCAAGGTACTTTTCAACAGGAACTTTCTACTTTCATGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAGGTGCAAGGTACTTTTCAACAGGAACTTTCTACTTTCATGAT  925

seq1  CTCCACATAAAACAAACACAAAGGCAGCTTAGAATAACCCCAGGAGAGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATAAAACAAACACAAAGGCAGCTTAGAATAACCCCAGGAGAGGG  975

seq1  AACAGAACGACGACAACAACAACGAAACCATTTGACGATGTGCACACACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACGACGACAACAACAACGAAACCATTTGACGATGTGCACACACA  1025

seq1  GTACAGGGGTAAAAAGAATACATCACATAATTGCCATCTAGCCACACCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGGGTAAAAAGAATACATCACATAATTGCCATCTAGCCACACCTC  1075

seq1  AAGCCTATGTCCCGCTGTGTCCATGAGAATTC  1132
      ||||||||||||||||||||||||||||||||
seq2  AAGCCTATGTCCCGCTGTGTCCATGAGAATTC  1107

seq1: chr1_138032186_138033149
seq2: B6Ng01-110M22.g_67_1022

seq1  GAATTCATTTGCAGCTAATCCATTCATTTTTTGACTGTGACCGAACACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGCAGCTAATCCATTCATTTTTTGACTGTGACCGAACACCA  50

seq1  TAATTGCTTAGAATTTTGCTCAGTGCTGGGCACTGTGCTCGTACTATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCTTAGAATTTTGCTCAGTGCTGGGCACTGTGCTCGTACTATCAT  100

seq1  GCTCAGCTGACCAAATACTTGATGCTCCTCTCATGAGCAAACACAGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCTGACCAAATACTTGATGCTCCTCTCATGAGCAAACACAGGGCA  150

seq1  GCAGGGATGGGGGAAAAGGCTGGATCCAAACCCAGGGCACTCTCCTTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGATGGGGGAAAAGGCTGGATCCAAACCCAGGGCACTCTCCTTTGC  200

seq1  AAGCACACGCTTACTAGACAGCCCTTGCCTGCCCAAACTGGAGTCTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACGCTTACTAGACAGCCCTTGCCTGCCCAAACTGGAGTCTCATT  250

seq1  CCAGCCTCTAATTGGCTGAGTGCTGTGGTCATGGTCGCTGCTTCTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCTAATTGGCTGAGTGCTGTGGTCATGGTCGCTGCTTCTGTTCC  300

seq1  TTCAGATGCTTCATTGCCCTGCCCTGTTGTGGTGAAAGGAGATGAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGCTTCATTGCCCTGCCCTGTTGTGGTGAAAGGAGATGAAGGAA  350

seq1  ATACACACAGCACCATGCAGATGCACCATACCACACATTCTCCAAGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACAGCACCATGCAGATGCACCATACCACACATTCTCCAAGTGTG  400

seq1  CCTTAGCTGCCTGTCACCTCCGAGGCCTGAGCTCCCAGATCCTTGCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCTGCCTGTCACCTCCGAGGCCTGAGCTCCCAGATCCTTGCTGTT  450

seq1  TTCTTTTGGGTTTTTAGAAGCTGCTGTTCTCCTGTTCTGAGGTCCTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGGGTTTTTAGAAGCTGCTGTTCTCCTGTTCTGAGGTCCTTGTG  500

seq1  ACTGTCTCCTGCCTGAGCCACTCTCCAGGCAAGGATGGCTCTAGCAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCCTGCCTGAGCCACTCTCCAGGCAAGGATGGCTCTAGCAGAGG  550

seq1  TTTCTCAGCCTTCCTCACGCTGCATGCAACCCCTTTAGTTAATACAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGCCTTCCTCACGCTGCATGCAACCCCTTTAGTTAATACAGTTC  600

seq1  CTTATGTTGTGGTGAATCCCACCCATGAAACTGTTTTTTTTTGCTACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTTGTGGTGAATCCCACCCATGAAACTGTTTTTTTTTGCTACTCC  650

seq1  ACAGCTGTAATTTTGCTACTGTTATGAATCATAAGAAGATTGGGGGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTAATTTTGCTACTGTTATGAATCATAAGAAGATTGGGGGTTGG  700

seq1  GGCTCTGAGGGCTCTGTAGCCCTGGGGCAGGCGGTGACCTATTGGATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAGGGCTCTGTAGCCCTGGGGCAGGCGGTGACCTATTGGATGCA  750

seq1  TTGTCCCCATCTCTGGTGGGCTCCTTCATTTACCTCCAGCTTTTCTCGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCCATCTCTGGTGGGCTCCTTCATTTACCTCCAGCTTTTCTCGGA  800

seq1  TATGGGAAAGAGAGTGTACTATGGTCCCTATCCCCAAATGCAAGCTACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAAAGAGAGTGTACTATGGTCCCTATCCCCAAATGCAAGCTACCT  850

seq1  GTCCTCTCTCTATGCTAAGCTGTCCTATTTCAGGGAGGTGCACTTCACCA  900
      || |||||||||||||||||||||||||||||||   |||||||||| ||
seq2  GT-CTCTCTCTATGCTAAGCTGTCCTATTTCAGG--AGTGCACTTCA-CA  896

seq1  GAGAGCCAGCTGCCTGAAAACTTGCAATAGGGAAAGGCAGCAGGACCAGT  950
      |||||||||||| ||| |||||||| ||||||||| |||||||   ||||
seq2  GAGAGCCAGCTG-CTG-AAACTTGC-ATAGGGAAA-GCAGCAG--ACAGT  940

seq1  GT-GGTGG-AGGGAGG  964
      || ||||| |||||||
seq2  GTGGGTGGAAGGGAGG  956