BAC Information

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BAC

Clone NameB6Ng01-110P20
Chromosome1 (Build37)11 (Build37)
Map Location 134,919,467 - 134,920,26697,585,989 - 97,586,336
singlet/doubletsingletsinglet
Overlap geneMdm4
Upstream geneElk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2
Downstream geneLOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110P20.bB6Ng01-110P20.g
ACCDH917455DH917456
length939693
definitionDH917455|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P20, 5' end.DH917456|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(134,919,467 - 134,920,266)(97,585,989 - 97,586,336)
sequence
gaattctgtcttaaaagcatatttagccgggcggtggtggcgcacgcctt
taatcccagcacttgggaggcagaggcaggcagatttctgagtttgaggc
cagcctggtctacagagtgagtccaggacagccagggccagggctataca
gagaaaccctgtctcgaaaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagaaagaaacaaaccaaccaaccaaccaaccaacca
accaacctacaaatacaaccaatgaggacccagctaaataaagtgtatct
gacaaccactctggatatcaatctggcagttcctcagaaaattggacata
gtaataccggaagattcagcaataccactcctggacatatacccagaaga
tgctccaacttgtaataatgacacatgctctactatatttagagcagcct
tatttataatagccagaaactggaaagaacccagatgcccctcaacagag
gaacggatacagaaaatgtggtacatttacacaatggagtactacgcagc
tattaaaaacaatgaatttatgaaattcttaagacaaatggatggatctg
gaggatatcatcctgagtgaggtaacccattcataaaagaacacacatga
tctgcactcactgataactggatattagcccagataatcagaatacccaa
gatacaatttgcaaaacacatgaaactcaagaaggaagacaaaagtgtgg
atacttcgatccttcttagaagggggaacaaaatacctatggaaggagtt
acagagacaaagttcggagcagagactgaaggaatgaccatcaagagact
gccccacctggagatccatcccataaacaaccaccaaacccagacactat
tgcaggatgccaacaagattttgctgacaggaacctgat
gaattctaggatatccaggactacacagagaagccctgtctcaaaataaa
taaataaataaataaataaataaaaataaaaacagaagaaaagcttttca
taactatctaacttgattattgcaattactctgagagatattattcaaat
tttatagatggcctctttcttatcttcaacttatttaattttatacatgt
acacctgcatgccagaagagggcccaagatctcattacagatggttgtga
gccaacatgtggtttctgggatttgaactcaggacctctagaagagcagc
cagtgctcttaaccgctgagccacctctccagccctatagatggcttctt
aagactaaagcagtttactcacagctagtgctatgggaagctgaggctca
agccgattcttattcctgaaccaatgtcaagctctcttgatactaaaaga
gccataggagccgggcgtggtggtgcacgcctttaatcccagcacttggg
aggcagaggcaggcggatttctgagtttgaggccagcctggtctacaaag
tgagttccaggacaggcagggctatacagagaaaaccctgtctcgagaaa
ccaaaaaaataaaaaattaaaaaaaagagccataggaaggaaaccatccg
tccaactggctcataggtgagttctaatgaagcctgccaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_134919467_134920266
seq2: B6Ng01-110P20.b_47_846

seq1  GAATTCTGTCTTAAAAGCATATTTAGCCGGGCGGTGGTGGCGCACGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTAAAAGCATATTTAGCCGGGCGGTGGTGGCGCACGCCTT  50

seq1  TAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGC  100

seq1  CAGCCTGGTCTACAGAGTGAGTCCAGGACAGCCAGGGCCAGGGCTATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACAGAGTGAGTCCAGGACAGCCAGGGCCAGGGCTATACA  150

seq1  GAGAAACCCTGTCTCGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTGTCTCGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  200

seq1  AAAGAAAGAAAGAAAGAAAGAAACAAACCAACCAACCAACCAACCAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAACAAACCAACCAACCAACCAACCAACCA  250

seq1  ACCAACCTACAAATACAACCAATGAGGACCCAGCTAAATAAAGTGTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCTACAAATACAACCAATGAGGACCCAGCTAAATAAAGTGTATCT  300

seq1  GACAACCACTCTGGATATCAATCTGGCAGTTCCTCAGAAAATTGGACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCACTCTGGATATCAATCTGGCAGTTCCTCAGAAAATTGGACATA  350

seq1  GTAATACCGGAAGATTCAGCAATACCACTCCTGGACATATACCCAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACCGGAAGATTCAGCAATACCACTCCTGGACATATACCCAGAAGA  400

seq1  TGCTCCAACTTGTAATAATGACACATGCTCTACTATATTTAGAGCAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAACTTGTAATAATGACACATGCTCTACTATATTTAGAGCAGCCT  450

seq1  TATTTATAATAGCCAGAAACTGGAAAGAACCCAGATGCCCCTCAACAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAATAGCCAGAAACTGGAAAGAACCCAGATGCCCCTCAACAGAG  500

seq1  GAACGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACGCAGC  550

seq1  TATTAAAAACAATGAATTTATGAAATTCTTAAGACAAATGGATGGATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAACAATGAATTTATGAAATTCTTAAGACAAATGGATGGATCTG  600

seq1  GAGGATATCATCCTGAGTGAGGTAACCCATTCATAAAAGAACACACATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATATCATCCTGAGTGAGGTAACCCATTCATAAAAGAACACACATGA  650

seq1  TCTGCACTCACTGATAACTGGATATTAGCCCAGATAATCAGAATACCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTCACTGATAACTGGATATTAGCCCAGATAATCAGAATACCCAA  700

seq1  GATACAATTTGCAAAACACATGAAACTCAAGAAGGAAGACAAAAGTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAATTTGCAAAACACATGAAACTCAAGAAGGAAGACAAAAGTGTGG  750

seq1  ATACTTCGATCCTTCTTAGAAGGGGGAACAAAATACCTATGGAAGGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCGATCCTTCTTAGAAGGGGGAACAAAATACCTATGGAAGGAGTT  800

seq1: chr11_97585989_97586336
seq2: B6Ng01-110P20.g_282_686 (reverse)

seq1  TTTTTTATTTTTTT--------CAGACAGGG-TTTCTCTGTATAGTCCTG  41
      ||||||||||||||         |||||||| ||||||||||||| ||||
seq2  TTTTTTATTTTTTTGGTTTCTCGAGACAGGGTTTTCTCTGTATAGCCCTG  50

seq1  GCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTGGAACTCAGAAAT  91
       ||||||||||||||||| ||||||||||||||||||  |||||||||||
seq2  CCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAAT  100

seq1  CTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCAC  141
      | |||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  CCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCAC  150

seq1  TGCCCAGCTAGACTTGTGG--TTTTTA----AAACAG-GCTCTACAGGAG  184
       |||| |||   | | |||   |||||     || || |||  |||   |
seq2  -GCCCGGCT---CCTATGGCTCTTTTAGTATCAAGAGAGCTTGACATTGG  196

seq1  CTCGGGAGATAGA---------TACCTCAGTGGTTAAGAGCACTGGCTG-  224
       || |||   |||           ||||||      | |||||| |||| 
seq2  TTCAGGAATAAGAATCGGCTTGAGCCTCAGCTTCCCATAGCACTAGCTGT  246

seq1  -----------------------------------GGGCTGGAGAGATGG  239
                                         ||||||||||| |||
seq2  GAGTAAACTGCTTTAGTCTTAAGAAGCCATCTATAGGGCTGGAGAGGTGG  296

seq1  CTCAGCGGTTAAGAGTACTGTCTTTTCTTCCAAAGGTCCAGAGTTCAATT  289
      ||||||||||||||| |||| ||  ||||| | |||||| |||||||| |
seq2  CTCAGCGGTTAAGAGCACTGGCTGCTCTTCTAGAGGTCCTGAGTTCAAAT  346

seq1  TCCAGCAACTACATTCTGGCTCACAACCATCTGTAATGAGATCTGATGCC  339
       |||| ||| ||||  ||||||||||||||||||||||||||||   |||
seq2  CCCAGAAACCACATGTTGGCTCACAACCATCTGTAATGAGATCTTGGGCC  396

seq1  CTCTTCTGG  348
      |||||||||
seq2  CTCTTCTGG  405