BAC Information

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BAC

Clone NameB6Ng01-111A07
Chromosome1 (Build37)
Map Location 153,133,131 - 153,288,672
singlet/doubletdoublet
Overlap geneIvns1abp, 1200016B10Rik, 1190005F20Rik
Upstream genePdc, BC003331, Tpr, EG625534, EG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286
Downstream geneRnf2, Niban, Edem3, 1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111A07.bB6Ng01-111A07.g
ACCDH917477DH917478
length1,0401,121
definitionDH917477|Mus musculus domesticus DNA, BAC clone: B6Ng01-111A07, 5' end.DH917478|Mus musculus domesticus DNA, BAC clone: B6Ng01-111A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,133,131 - 153,134,179)(153,287,533 - 153,288,672)
sequence
gaattcctgatcctcctgcttacagctcccaagtgctgggtgctgctgct
gctgctgctgctgctgctggcctatacctacatctgaaccctgatctcta
tatcagggaagtgtgtgtgaagagaagtcagggctggtagtcacacaggg
tgcactggctgataggttttcaaatgctagaaacatagggtcaaatattt
tactagaatagacatgtcataattgctcatcagaaggttacttttaaaac
gagggactaatgcttaactgcacatatttttgtctttcaaactgactccc
aaactgaaggagtactactatcatcttctgagagagaagcgaaaatcaaa
atatttaaagtaataatatcatggatcatggagattgcctaaagagtccc
ataataagatagttcttttttttttaaatccaatcttaatacaaacatta
gagaagaggaggctaaagccttgtgtattcagcccatggattcctggaaa
ttgccacttaggtctgtaattagcacatagtcacacagccagtctgggac
atacaaacaatggaacaattaatgaactgtctctaatgtcagagctctca
cctcggtcttattaagaaatctaaatcagaataaaaactaattcttggga
aataaaattttcaggcaggggagaaagtctaccttttttaaatatatgca
ttcacaaaatccatcctatgaacagtctatagttagagcagatgcctcta
tacatgaagaacaaagcaatggccccgtaagaaaaggaacatgccactgt
cccaaggacctgacttctgtccctggggtgtaggagacagaaggaaagga
tcatcaagccattctcagcaacccataagttgccttctgaccccacacac
atgagtgcacgtactcacacagaaaatggataaaataattaaaaaaaaaa
aagcaaggctttggtgccacattcatatctacactttcaagagaaagaca
tggggtctgagcagagtagacatctgtctctctcttcatc
gaattccaggacagccagggctacacagagaaaccctgtttcgaaaaacc
aaaaaataaataaattaaaaaaaaaaaaaaaaaaaagaactgacaagaac
atataatcctttagctacaaatgcaaatgggtactgatgtgaaaacatga
tactgccttaaatactcagagaataagatacgtaatctggaaaaataatt
atactctttatttatttaattaatttggtttttcgagacagggtttctct
gtatagttctggctggccttgaactcagaaatctacctgcctcaggctgg
agagatggctcagtggttaagagcactgactgttctgccaaaggtcctga
gttcaaatcccagcaaccacatgatggctcacaaccatctataatgggat
ctgatgccctcttctggtgtgtctgatacataaaataaatacatcttata
taaaaaaaaaaaaagaaaagaaatccgcctgcctctgcctcctgagtgct
gggattaatggcgtgcaccaccatgcccagcacttacagcctatatttgt
tatctgtcttgtttaaggacctaattatgagtatgctaatgagatcacgt
aacttaccagcaatgtacctggatttagtttcccctttgttgacatggcg
cttaacatgccctagcatgtcagtcctcctggtgattgttgctgaacaaa
tgatgcagtgataatgggcgcccagtttactggatatctatcgaacagag
catttgattgaacaggttactaaggcaacaaagtgcaagtttccaaatgg
tactatgtcactgaactggatttaacagtgtaaaaggtgatgttaatttc
ctgatgtacctttgaaagaatcatttcactagtgatgcttatatacactt
tgttctagcagccacagtgaccctacctagttttcattctttctgttcag
taaacaccacactgttattttattagcttgtacttatagatagatgatgt
taacagtctgctacccctaagtttagtgtcttcttagaaactgtttgtag
aatgtcctcactgttgtcaactgatcttataataaacctgcacttattta
tttttgctaagtcagcgctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_153133131_153134179
seq2: B6Ng01-111A07.b_47_1083

seq1  GAATTCCTGATCCTCCTGCTTACAGCTCCCAAGTGCTGGGTGCTGCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCCTCCTGCTTACAGCTCCCAAGTGCTGGGTGCTGCTGCT  50

seq1  GCTGCTGCTGCTGCTGCTGGCCTATACCTACATCTGAACCCTGATCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTGCTGCTGCTGGCCTATACCTACATCTGAACCCTGATCTCTA  100

seq1  TATCAGGGAAGTGTGTGTGAAGAGAAGTCAGGGCTGGTAGTCACACAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGGAAGTGTGTGTGAAGAGAAGTCAGGGCTGGTAGTCACACAGGG  150

seq1  TGCACTGGCTGATAGGTTTTCAAATGCTAGAAACATAGGGTCAAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGGCTGATAGGTTTTCAAATGCTAGAAACATAGGGTCAAATATTT  200

seq1  TACTAGAATAGACATGTCATAATTGCTCATCAGAAGGTTACTTTTAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGAATAGACATGTCATAATTGCTCATCAGAAGGTTACTTTTAAAAC  250

seq1  GAGGGACTAATGCTTAACTGCACATATTTTTGTCTTTCAAACTGACTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACTAATGCTTAACTGCACATATTTTTGTCTTTCAAACTGACTCCC  300

seq1  AAACTGAAGGAGTACTACTATCATCTTCTGAGAGAGAAGCGAAAATCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAGGAGTACTACTATCATCTTCTGAGAGAGAAGCGAAAATCAAA  350

seq1  ATATTTAAAGTAATAATATCATGGATCATGGAGATTGCCTAAAGAGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAAGTAATAATATCATGGATCATGGAGATTGCCTAAAGAGTCCC  400

seq1  ATAATAAGATAGTTCTTTTTTTTTTAAATCCAATCTTAATACAAACATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAGATAGTTCTTTTTTTTTTAAATCCAATCTTAATACAAACATTA  450

seq1  GAGAAGAGGAGGCTAAAGCCTTGTGTATTCAGCCCATGGATTCCTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGGAGGCTAAAGCCTTGTGTATTCAGCCCATGGATTCCTGGAAA  500

seq1  TTGCCACTTAGGTCTGTAATTAGCACATAGTCACACAGCCAGTCTGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACTTAGGTCTGTAATTAGCACATAGTCACACAGCCAGTCTGGGAC  550

seq1  ATACAAACAATGGAACAATTAATGAACTGTCTCTAATGTCAGAGCTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACAATGGAACAATTAATGAACTGTCTCTAATGTCAGAGCTCTCA  600

seq1  CCTCGGTCTTATTAAGAAATCTAAATCAGAATAAAAACTAATTCTTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTCTTATTAAGAAATCTAAATCAGAATAAAAACTAATTCTTGGGA  650

seq1  AATAAAATTTTCAGGCAGGGGAGAAAGTCTACCTTTTTTAAATATATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATTTTCAGGCAGGGGAGAAAGTCTACCTTTTTTAAATATATGCA  700

seq1  TTCACAAAATCCATCCTATGAACAGTCTATAGTTAGAGCAGATGCCTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAATCCATCCTATGAACAGTCTATAGTTAGAGCAGATGCCTCTA  750

seq1  TACATGAAGAACAAAGCAATGGCCCCGTAAGAAAAGGAACATGCCACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAAGAACAAAGCAATGGCCCCGTAAGAAAAGGAACATGCCACTGT  800

seq1  CCCAAGGACCTGACTTCTGTCCCTGGGGTGTAGGAGACAGAAGGAAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGACCTGACTTCTGTCCCTGGGGTGTAGGAGACAGAAGGAAAGGA  850

seq1  TCATCAAGCCATTCTCAGCAACCCATAAGTTGCCTTCTGACCCCACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGCCATTCTCAGCAACCCATAAGTTGCCTTCTGACCCCACACAC  900

seq1  ATGAGTGCACGTACTCACACAGAAAAATGGAATAAAAATAATTAAAAAAA  950
      |||||||||||||||||||||| ||||||||   |||||||||  |||||
seq2  ATGAGTGCACGTACTCACACAG-AAAATGGA--TAAAATAATT--AAAAA  945

seq1  AAAAAAAGCAAGGCTTTGGTGCCACATTCATAATCCTACCACTTTCAAGA  1000
      ||||||||||||||||||||||||||||||||   ||| |||||||||||
seq2  AAAAAAAGCAAGGCTTTGGTGCCACATTCATA--TCTA-CACTTTCAAGA  992

seq1  GAAAGACAATGGGGTCTGAGCCAGAGTAAGACATCCTGTCTCTCTCTTC  1049
      ||||||| |||||||||||| |||||| |||||| ||||||||||||||
seq2  GAAAGAC-ATGGGGTCTGAG-CAGAGT-AGACAT-CTGTCTCTCTCTTC  1037

seq1: chr1_153287533_153288672
seq2: B6Ng01-111A07.g_67_1187 (reverse)

seq1  GCAGCGCTGACTTTATAGGCATAAATAAATAAAGTGCATGTGTTTATTAT  50
      |||||||||||||     ||| |||||||| |||||||   |||||||| 
seq2  GCAGCGCTGACTT----AGCAAAAATAAAT-AAGTGCA--GGTTTATTA-  42

seq1  TAAGATCAGTTTGACCAACAGTGAAGACATCTTACAAAACAGTTTCTAAG  100
      ||||||||| |||| ||||||||| |||||  ||| ||||||||||||||
seq2  TAAGATCAG-TTGA-CAACAGTGAGGACATTCTAC-AAACAGTTTCTAAG  89

seq1  AAGACAACTAAACTTAGGGGTAGCAGGACTGTTAACATCATCCTATCTAT  150
      ||||| ||||||||||||||||||| ||||||||||||||| ||||||||
seq2  AAGAC-ACTAAACTTAGGGGTAGCA-GACTGTTAACATCAT-CTATCTAT  136

seq1  AAGTACAGCTTATATAAAATAACAGTGTGGTGGTTTACTGAACAGAAAGA  200
      |||||||   || |||||||||||||||||| ||||||||||||||||||
seq2  AAGTACAAGCTA-ATAAAATAACAGTGTGGT-GTTTACTGAACAGAAAGA  184

seq1  ATGGAAAACTAGGTAGGGTCACTTGTGGCCTGCTAGAACAAAGTGTATAT  250
      || ||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  AT-GAAAACTAGGTAGGGTCAC-TGTGG-CTGCTAGAACAAAGTGTATAT  231

seq1  AAGCATCACTAGTGAAATGATTCTTTCAAAGGTACATCAGGAAATTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCACTAGTGAAATGATTCTTTCAAAGGTACATCAGGAAATTAACA  281

seq1  TCACCTTTTACACTGTTAAATCCAGTTCAGTGACATAGTACCATTTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTTACACTGTTAAATCCAGTTCAGTGACATAGTACCATTTGGAA  331

seq1  ACTTGCACTTTGTTGCCTTAGTAACCTGTTCAATCAAATGCTCTGTTCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCACTTTGTTGCCTTAGTAACCTGTTCAATCAAATGCTCTGTTCGA  381

seq1  TAGATATCCAGTAAACTGGGCGCCCATTATCACTGCATCATTTGTTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATCCAGTAAACTGGGCGCCCATTATCACTGCATCATTTGTTCAGC  431

seq1  AACAATCACCAGGAGGACTGACATGCTAGGGCATGTTAAGCGCCATGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCACCAGGAGGACTGACATGCTAGGGCATGTTAAGCGCCATGTCA  481

seq1  ACAAAGGGGAAACTAAATCCAGGTACATTGCTGGTAAGTTACGTGATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGGAAACTAAATCCAGGTACATTGCTGGTAAGTTACGTGATCTC  531

seq1  ATTAGCATACTCATAATTAGGTCCTTAAACAAGACAGATAACAAATATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATACTCATAATTAGGTCCTTAAACAAGACAGATAACAAATATAG  581

seq1  GCTGTAAGTGCTGGGCATGGTGGTGCACGCCATTAATCCCAGCACTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAGTGCTGGGCATGGTGGTGCACGCCATTAATCCCAGCACTCAGG  631

seq1  AGGCAGAGGCAGGCGGATTTCTTTTCTTTTTTTTTTTTTATATAAGATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGGCGGATTTCTTTTCTTTTTTTTTTTTTATATAAGATGT  681

seq1  ATTTATTTTATGTATCAGACACACCAGAAGAGGGCATCAGATCCCATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTATGTATCAGACACACCAGAAGAGGGCATCAGATCCCATTAT  731

seq1  AGATGGTTGTGAGCCATCATGTGGTTGCTGGGATTTGAACTCAGGACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTGTGAGCCATCATGTGGTTGCTGGGATTTGAACTCAGGACCTT  781

seq1  TGGCAGAACAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAACAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCTGAG  831

seq1  GCAGGTAGATTTCTGAGTTCAAGGCCAGCCAGAACTATACAGAGAAACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTAGATTTCTGAGTTCAAGGCCAGCCAGAACTATACAGAGAAACCC  881

seq1  TGTCTCGAAAAACCAAATTAATTAAATAAATAAAGAGTATAATTATTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGAAAAACCAAATTAATTAAATAAATAAAGAGTATAATTATTTTT  931

seq1  CCAGATTACGTATCTTATTCTCTGAGTATTTAAGGCAGTATCATGTTTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTACGTATCTTATTCTCTGAGTATTTAAGGCAGTATCATGTTTTC  981

seq1  ACATCAGTACCCATTTGCATTTGTAGCTAAAGGATTATATGTTCTTGTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTACCCATTTGCATTTGTAGCTAAAGGATTATATGTTCTTGTCA  1031

seq1  GTTCTTTTTTTTTTTTTTTTTTTTAATTTATTTATTTTTTGGTTTTTCGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTTTTTTTTTTTTTTTTTAATTTATTTATTTTTTGGTTTTTCGA  1081

seq1  AACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATTC  1121