BAC Information

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BAC

Clone NameB6Ng01-111E15
Chromosome1 (Build37)
Map Location 171,650,244 - 171,830,145
singlet/doubletdoublet
Overlap geneRgs4, LOC100039960
Upstream geneEG383613, Nuf2, Rgs5
Downstream gene1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111E15.bB6Ng01-111E15.g
ACCDH917670DH917671
length9121,117
definitionDH917670|Mus musculus domesticus DNA, BAC clone: B6Ng01-111E15, 5' end.DH917671|Mus musculus domesticus DNA, BAC clone: B6Ng01-111E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,650,244 - 171,651,161)(171,829,043 - 171,830,145)
sequence
gaattctttcagtgtgagtcagggctttaaatggaactgacttgggtcat
tggccaagtctttgaacttacaaaccaaggctcatctcctagtgctcaca
gacaggtcctttgctcagtcagcctactcactggtgatcccttttgcctt
tcttatgtcgtttgtcctctgtgtagctaataatcctttgaatgatcccc
agtttaaaaccttctgcatcattggatcacactgtttcctctgagtacac
acatggctctctttgaagtataggccaccatctggctctgtctagggcta
ccctttggcctatgtactcactcaaggagttaactctttctggacctctg
taaagtgggggggggatagcaataagatcaaggtggaagtaattacatga
gatcctatttttcaaagcatttaacactttcccaagaatatcacaaggtc
ttgaggacattccgactcatcttgttaacagttgctgataacttcagccc
caacacattcttaactgcggagtagcattttcttccacagtagagccacc
attgaaggaaagagaaaaatgatgaaccctgttgcctctggttaaacatg
acttctccactgatttctcacctgctttcatggcctgtggttcaaataac
acgctcattctgcacaaatatctccttacttatgaatgatatcagtggag
accctaagtacctggaaagagagaatgagtatctggctagaagagtgagg
ctctgaaaatgtctgtcaaatgcacaggctgggctcagagcagcagcatg
ccttgatgagaatgaattcagctgttagttttgtagcacatcttattgat
tccacattttgcgaggtcagctgcgtaaggtcttgctgactacaccagca
tactgcaccata
gaattccaaaagaaccagtttgctccccgtttccagcgtctggggaagat
gccattcattggctcccagatgcttttctttatgtccaagacagaaaaat
cctggtcaaccttcctcacattgcattaacttactcaggacatgagaaga
ggctctgattatggaggactgagtgtgctcactgggtgaaagatctcatc
tggaagagtaggtacatagaagggattagaaaatgtgtccaacgttactg
aaacaggaggtggatcaggtgtcattccaaccaccttgtatcttaattcc
acccagatttctagttaaatccgtgagattcacaatctagttgtaaaatg
taaataacaacccgatgctcttggaatatgaagaaagaaagaaacaaaag
acaagaaagtattttataacttacaatgtacctaaccagtaagaacaggt
aatgttttcgagtgcagaacagcatcagctcatttcgtcccataaggtaa
gacggttattgcactcacttgtcagttcagggtgtgctgtattttctcag
cttcatagcttccaggtgattgatggagccaggctatttaccgactcggt
tcgtaaccagagcctgctgtatctcagtatcagtggaagatagttttcac
caatcatcagtttacgttgtgggcttatgttcatttaccagtcacagcat
aacagggtatcacaatctccgtggtttcacagatgaatgtatttttctca
cagttctcagagttcagagagagatcaaggttggcaaggccatccctttc
tgaagggctgttgaggaaaagcagactcctgggggatcttctcctgggtg
tctgggtgggtcactgttcatcttttagggtccctcggtttgaggaattg
tcatttcgattgtttccctcattgtcacatctctcttttcctctctctcc
tctctctctaagttcctttaaaacaatggatgcaatcactggctgcattt
gacctctcttatcccacagcttcgagcctatttgcatcatttttctaggg
atgccaggtgtttaggactttaaagggtatgatatttagaaagaagtgca
ttgtaactccacagcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_171650244_171651161
seq2: B6Ng01-111E15.b_44_955

seq1  GAATTCTTTCAGTGTGAGTCAGGGCTTTAAATGGAACTGACTTGGGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGTGTGAGTCAGGGCTTTAAATGGAACTGACTTGGGTCAT  50

seq1  TGGCCAAGTCTTTGAACTTACAAACCAAGGCTCATCTCCTAGTGCTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAGTCTTTGAACTTACAAACCAAGGCTCATCTCCTAGTGCTCACA  100

seq1  GACAGGTCCTTTGCTCAGTCAGCCTACTCACTGGTGATCCCTTTTGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTCCTTTGCTCAGTCAGCCTACTCACTGGTGATCCCTTTTGCCTT  150

seq1  TCTTATGTCGTTTGTCCTCTGTGTAGCTAATAATCCTTTGAATGATCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGTCGTTTGTCCTCTGTGTAGCTAATAATCCTTTGAATGATCCCC  200

seq1  AGTTTAAAACCTTCTGCATCATTGGATCACACTGTTTCCTCTGAGTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAACCTTCTGCATCATTGGATCACACTGTTTCCTCTGAGTACAC  250

seq1  ACATGGCTCTCTTTGAAGTATAGGCCACCATCTGGCTCTGTCTAGGGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTCTCTTTGAAGTATAGGCCACCATCTGGCTCTGTCTAGGGCTA  300

seq1  CCCTTTGGCCTATGTACTCACTCAAGGAGTTAACTCTTTCTGGACCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGGCCTATGTACTCACTCAAGGAGTTAACTCTTTCTGGACCTCTG  350

seq1  TAAAGTGGGGGGGGGATAGCAATAAGATCAAGGTGGAAGTAATTACATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGGGGGGGGGATAGCAATAAGATCAAGGTGGAAGTAATTACATGA  400

seq1  GATCCTATTTTTCAAAGCATTTAACACTTTCCCAAGAATATCACAAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTATTTTTCAAAGCATTTAACACTTTCCCAAGAATATCACAAGGTC  450

seq1  TTGAGGACATTCCGACTCATCTTGTTAACAGTTGCTGATAACTTCAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGACATTCCGACTCATCTTGTTAACAGTTGCTGATAACTTCAGCCC  500

seq1  CAACACATTCTTAACTGCGGAGTAGCATTTTCTTCCACAGTAGAGCCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACATTCTTAACTGCGGAGTAGCATTTTCTTCCACAGTAGAGCCACC  550

seq1  ATTGAAGGAAAGAGAAAAATGATGAACCCTGTTGCCTCTGGTTAAACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGGAAAGAGAAAAATGATGAACCCTGTTGCCTCTGGTTAAACATG  600

seq1  ACTTCTCCACTGATTTCTCACCTGCTTTCATGGCCTGTGGTTCAAATAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCACTGATTTCTCACCTGCTTTCATGGCCTGTGGTTCAAATAAC  650

seq1  ACGCTCATTCTGCACAAATATCTCCTTACTTATGAATGATATCAGTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCATTCTGCACAAATATCTCCTTACTTATGAATGATATCAGTGGAG  700

seq1  ACCCTAAGTACCTGG-AAGAGAGAATGAGTATCTGGCTAG-AGAGTGAGG  748
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  ACCCTAAGTACCTGGAAAGAGAGAATGAGTATCTGGCTAGAAGAGTGAGG  750

seq1  CTCTGAAAATGTCTGTCAAATGCACAGGCTGGGCTCAGAGCAGCAGCAGG  798
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCTGAAAATGTCTGTCAAATGCACAGGCTGGGCTCAGAGCAGCAGCATG  800

seq1  CC-TGAGGAGAAGGAAAACAGGCTGTTAGTTTTGTAGCAACATCTTATTG  847
      || ||| ||||| |||  || ||||||||||||||||| |||||||||||
seq2  CCTTGATGAGAATGAATTCA-GCTGTTAGTTTTGTAGC-ACATCTTATTG  848

seq1  ATTTCTACATTTTTGCTGAGGTTCAAGCTGGCGTAGGCTC-TGCTGACTA  896
      | ||| ||| |||||| |||||   |||| ||||| | || |||||||||
seq2  A-TTCCACA-TTTTGC-GAGGT--CAGCT-GCGTAAGGTCTTGCTGACTA  892

seq1  CACCAGCATCACTGCCACCATA  918
      ||||||||| |||| |||||||
seq2  CACCAGCAT-ACTG-CACCATA  912

seq1: chr1_171829043_171830145
seq2: B6Ng01-111E15.g_66_1182 (reverse)

seq1  CCGCTGT-GAGTTACAATGCA--TCTTTCTAAAATTCATACC--TTTAAG  45
      ||||||| |||||||||||||  ||||||||||  |||||||  || |||
seq2  CCGCTGTGGAGTTACAATGCACTTCTTTCTAAATATCATACCCTTTAAAG  50

seq1  TCCT-AACACCCGGCAT-CCTAG-AAAATGATGCAAATAGGCTCGATGCT  92
      |||| |||||| ||||| ||||| |||||||||||||||||||||| |||
seq2  TCCTAAACACCTGGCATCCCTAGAAAAATGATGCAAATAGGCTCGAAGCT  100

seq1  GGTGTGACTAAGATGAGGTCAAACTGCAG-CAGTGACTGGCATC--ATGT  139
       ||| || ||||| ||||||||| ||||| |||||| | |||||   |||
seq2  -GTGGGA-TAAGA-GAGGTCAAA-TGCAGCCAGTGA-TTGCATCCATTGT  145

seq1  TTTAAAAGGGAACTGAGAGAGAGA-GAGAGAGAGAGAGAGAGAGATGTGA  188
      ||||||  |||||| ||||||||| |||||||||  | ||||||||||||
seq2  TTTAAA--GGAACTTAGAGAGAGAGGAGAGAGAGGAAAAGAGAGATGTGA  193

seq1  CAATGAAGGAAACAATAGAAATGACAATTCCACAAACCGA-GGACCCT-A  236
      |||||| ||||||||| |||||||||||||| |||||||| ||||||| |
seq2  CAATGAGGGAAACAATCGAAATGACAATTCCTCAAACCGAGGGACCCTAA  243

seq1  AAGATTGACAGTGACCCA-CCAGACA-CCAGGAG-AGATCCCCAGGGAGT  283
      |||||  ||||||||||| ||||||| ||||||| ||||||||  |||||
seq2  AAGATGAACAGTGACCCACCCAGACACCCAGGAGAAGATCCCCCAGGAGT  293

seq1  CTGCTCTTCCTC-ACAG-CCTTCAG-AAGGGATGGCCTTGCCAACCTTGA  330
      ||||| |||||| |||| ||||||| ||||||||||||||||||||||||
seq2  CTGCTTTTCCTCAACAGCCCTTCAGAAAGGGATGGCCTTGCCAACCTTGA  343

seq1  TCTCTCTCTGAACTCTGAGAACTGTGAG-AAAATACATTCATCTGTGAAA  379
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTCTCTCTGAACTCTGAGAACTGTGAGAAAAATACATTCATCTGTGAAA  393

seq1  CCACGGAGATTGTGATACCCTGTTATGCTGTGACTGGTAAATGAACATAA  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGAGATTGTGATACCCTGTTATGCTGTGACTGGTAAATGAACATAA  443

seq1  GCCCACAACGTAAACTGATGATTGGTGAAAACTATCTTCCACTGATACTG  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAACGTAAACTGATGATTGGTGAAAACTATCTTCCACTGATACTG  493

seq1  AGATACAGCAGGCTCTGGTTACGAACCGAGTCGGTAAATAGCCTGGCTCC  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAGCAGGCTCTGGTTACGAACCGAGTCGGTAAATAGCCTGGCTCC  543

seq1  ATCAATCACCTGGAAGCTATGAAGCTGAGAAAATACAGCACACCCTGAAC  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCACCTGGAAGCTATGAAGCTGAGAAAATACAGCACACCCTGAAC  593

seq1  TGACAAGTGAGTGCAATAACCGTCTTACCTTATGGGACGAAATGAGCTGA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTGAGTGCAATAACCGTCTTACCTTATGGGACGAAATGAGCTGA  643

seq1  TGCTGTTCTGCACTCGAAAACATTACCTGTTCTTACTGGTTAGGTACATT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCTGCACTCGAAAACATTACCTGTTCTTACTGGTTAGGTACATT  693

seq1  GTAAGTTATAAAATACTTTCTTGTCTTTTGTTTCTTTCTTTCTTCATATT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTATAAAATACTTTCTTGTCTTTTGTTTCTTTCTTTCTTCATATT  743

seq1  CCAAGAGCATCGGGTTGTTATTTACATTTTACAACTAGATTGTGAATCTC  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCATCGGGTTGTTATTTACATTTTACAACTAGATTGTGAATCTC  793

seq1  ACGGATTTAACTAGAAATCTGGGTGGAATTAAGATACAAGGTGGTTGGAA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATTTAACTAGAAATCTGGGTGGAATTAAGATACAAGGTGGTTGGAA  843

seq1  TGACACCTGATCCACCTCCTGTTTCAGTAACGTTGGACACATTTTCTAAT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCTGATCCACCTCCTGTTTCAGTAACGTTGGACACATTTTCTAAT  893

seq1  CCCTTCTATGTACCTACTCTTCCAGATGAGATCTTTCACCCAGTGAGCAC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTATGTACCTACTCTTCCAGATGAGATCTTTCACCCAGTGAGCAC  943

seq1  ACTCAGTCCTCCATAATCAGAGCCTCTTCTCATGTCCTGAGTAAGTTAAT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTCCTCCATAATCAGAGCCTCTTCTCATGTCCTGAGTAAGTTAAT  993

seq1  GCAATGTGAGGAAGGTTGACCAGGATTTTTCTGTCTTGGACATAAAGAAA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTGAGGAAGGTTGACCAGGATTTTTCTGTCTTGGACATAAAGAAA  1043

seq1  AGCATCTGGGAGCCAATGAATGGCATCTTCCCCAGACGCTGGAAACGGGG  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGGGAGCCAATGAATGGCATCTTCCCCAGACGCTGGAAACGGGG  1093

seq1  AGCAAACTGGTTCTTTTGGAATTC  1103
      ||||||||||||||||||||||||
seq2  AGCAAACTGGTTCTTTTGGAATTC  1117