BAC Information

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BAC

Clone NameB6Ng01-111G03
Chromosome1 (Build37)
Map Location 53,434,251 - 53,494,155
singlet/doubletdoublet
Overlap geneEG627866, LOC100042162
Upstream geneNab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858
Downstream geneDnahc7, Stk17b, Hecw2, 4930511H11Rik, Gtf3c3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111G03.bB6Ng01-111G03.g
ACCDH917742DH917743
length1,116817
definitionDH917742|Mus musculus domesticus DNA, BAC clone: B6Ng01-111G03, 5' end.DH917743|Mus musculus domesticus DNA, BAC clone: B6Ng01-111G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,434,251 - 53,434,909)(53,493,329 - 53,494,155)
sequence
gaattccttacaatcccatgggacaaggaattgttgaatgtgtacattgc
cctctgaaaaatagacttttaaaaacaaaacagtggcaattataccttcc
caaggtcaccaaaagcacatcttgcagagctcaatggttgcctgaaagat
tggttcatcaagtggacacagaccctgaatcttctagtaagtatgattcc
aaccttgatgatggcagtcttagtcagggtttctattcctgcacaaacat
cgtgaccacgaagcaaattggggaggaaagggtttattcagcttacactt
ccatactgctgatcatcaccaaggaagtcaggactggaactcaagcaggt
caggaagcaggagctgatgcagaggccatggtgggatattccttactggc
ttgcttccactgtcttgctcagcctgctttcttatagaacccaagactac
cagcccagggatggtcccacccacaaggggcctttcccccttggtcacta
attgagaaactgcattacagctagatctcatggaagaatttccccaactg
aagttccagcctgttttgacacaaaactagccagtataatggctaaaaat
cttttttagccagaagtgttaatttggagcacagcctccacctccagaga
attaacagcttttctgttgattctcaaagccacctcacccacatcaggag
gacagagtttgagcttggtcattgctaatttacaactgaatagaatacct
aaaccccgcccccaaaagaagcctttatcctgttgcttttcaactctgtt
tgtatttcaagcaggtcagtcactgccctacagcctgttttccgcaagct
tgcaagcttgcctccagcaagcacaggtggcagaaattcattaatatgaa
gaaacatattgggtatctgttgtggctttggtctgattgggaataagtat
gctatgagggccagtagtcatgacagcacagatttctgactatatctatc
tgagcagagtacggtcagagagtgttatataataaccaagagcatgttgt
gcaataaacacagcagctacattactctgatgataagatagtcaggaaat
ctagtcagcaggcatg
gaattctgaaacatgacagagtcccaagaaaatgatactcagtggcagca
cttacattaaagtggctccttgcacaacttgtgaagtagaattgggtatc
tttggttgttgtggcatgtgccattaggatttgctgaaggaggaagaggc
agggagatcatgagtttgagaccaacctgtagtaaaattgggggttgagg
aacatttgcttctttcaacatttacagcatctacgccagtacatggactt
ggttgatttagttcaggcaatagctccagcgtgaagcttctagtcacacc
cctcttcctagcctctaaaggacggcagccctctttgactctcagagcag
ctatacattataacctcactgccaggagagtatgctcaattgtctatact
tgtaagagaatttaaaacatattcaaattaatttgctataagtgttctta
tgccacactgtctagaagaagaaagtaatgaacaggtttttggatggttc
tgagttgatgttcctcattttggtataatctaaacaatttctggcagttt
ctaaaacatggaggttatgacctataatgaactttggtggattgaggtca
tggcctacagtaaactttggtggtaaatgttattaattttttctcttgaa
actgtacagaagactttaaagtaaatggttacatctccatttcatagtga
ggatattaaagcaaagaggggatagcttcctgaaagctacatgactttaa
ataaagtagttctattgggccacttggcactgattagcctggatttaaag
gggctttgactgtctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_53434251_53434909
seq2: B6Ng01-111G03.b_540_1160

seq1  CACTAATTGAGAAACTGCATTACAGCTAGATCTCATGGAAGAATTTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATTGAGAAACTGCATTACAGCTAGATCTCATGGAAGAATTTCCCC  50

seq1  AACTGAAGTTCCAGCCTGTTTTGACACAAAACTAGCCAGTATAATGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGTTCCAGCCTGTTTTGACACAAAACTAGCCAGTATAATGGCTA  100

seq1  AAAATCTTTTTTAGCCAGAAGTGTTAATTTGGAGCACAGCCTCCACCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTTTTAGCCAGAAGTGTTAATTTGGAGCACAGCCTCCACCTCC  150

seq1  AGAGAATTAACAGCTTTTCTGTTGATTCTCAAAGCCACCTCACCCACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTAACAGCTTTTCTGTTGATTCTCAAAGCCACCTCACCCACATC  200

seq1  AGGAGGACAGAGTTTGAGCTTGGTCATTGCTAATTTACAACTGAATAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGACAGAGTTTGAGCTTGGTCATTGCTAATTTACAACTGAATAGAA  250

seq1  TACCTAAACCCCGCCCCCAAAAGAAGCCTTTATCCTGTTGCTTTTCAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAACCCCGCCCCCAAAAGAAGCCTTTATCCTGTTGCTTTTCAACT  300

seq1  CTGTTTGTATTTCAAGCAGGTCAGTCACTGCCCTACAGCCTGTTTTCCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTATTTCAAGCAGGTCAGTCACTGCCCTACAGCCTGTTTTCCGC  350

seq1  AAGCTTGCAAGCTTGCCTCCAGCAAGCACAGGTGGCAGAAATTCATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGCAAGCTTGCCTCCAGCAAGCACAGGTGGCAGAAATTCATTAAT  400

seq1  ATGAAGAAACATATTGGGTATCTGTTGTGGCTTTGGTCTGATTGGGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAACATATTGGGTATCTGTTGTGGCTTTGGTCTGATTGGGAATA  450

seq1  AGGTATGCTATGAGGGCCAGTTAGTCAATGACAGGCAACCAGATTTCTGA  500
      | |||||||||||||||||| ||||| |||||| |||  |||||||||| 
seq2  A-GTATGCTATGAGGGCCAG-TAGTC-ATGACA-GCA--CAGATTTCTG-  493

seq1  ACTATATCTATCTGAGGCAGAGGTACGGGCCAAGAGGAAGTGGTTTATTA  550
      ||||||||||||||| ||||| |||||| |  ||||  ||||  ||||  
seq2  ACTATATCTATCTGA-GCAGA-GTACGGTC--AGAG--AGTG--TTAT--  533

seq1  ATAATACACCACAGAGCCATGTTTGTGCAAAATAAACACAAGCAAGCTAC  600
      |||||| |||| |||| |||| ||||||  ||||||||| ||| ||||||
seq2  ATAATA-ACCA-AGAG-CATG-TTGTGC--AATAAACAC-AGC-AGCTAC  575

seq1  ATATACTTCCTTGATGGATAAGAATAGTTCATAGAAAATCTAGTCCCAAG  650
      || ||||    |||| |||||| |||||    || ||||||||||   ||
seq2  AT-TACT---CTGAT-GATAAG-ATAGT---CAGGAAATCTAGTC---AG  613

seq1  CCAGGCATG  659
       ||||||||
seq2  -CAGGCATG  621

seq1: chr1_53493329_53494155
seq2: B6Ng01-111G03.g_68_884 (reverse)

seq1  TCAGACAGTCATAGCACTCATATAAAATCCAGGCTATTCAAGTGCCAAGT  50
      ||||||||||| |||   |   | |||||||||||| || ||||||||||
seq2  TCAGACAGTCAAAGC---CCCTTTAAATCCAGGCTAATC-AGTGCCAAGT  46

seq1  GGCCCAATAGAAACTACTTTAATTTTAAAGTCATGTAGCTTTCAGGAAGC  100
      |||||||||| ||||||||||  |||||||||||||||||||||||||||
seq2  GGCCCAATAG-AACTACTTTA--TTTAAAGTCATGTAGCTTTCAGGAAGC  93

seq1  TATCCTCTCTTTGCTTTAATATCCCTCACTATGAAATGGAGATGTAACCA  150
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  TATCCCCTCTTTGCTTTAATAT-CCTCACTATGAAATGGAGATGTAACCA  142

seq1  TTTACTTTAAAGTCTTCTGTACAGTTTCAAAGAGAAAAAAATTAATAACA  200
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  TTTACTTTAAAGTCTTCTGTACAGTTTC-AAGAG-AAAAAATTAATAACA  190

seq1  TTTACCACCAAAGTTTACTGTAGGCCATGACCTCAATCCACCAAAGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCACCAAAGTTTACTGTAGGCCATGACCTCAATCCACCAAAGTTCA  240

seq1  TTATAGGTCATAACCTCCATGTTTTAGAAACTGCCAGAAATTGTTTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTCATAACCTCCATGTTTTAGAAACTGCCAGAAATTGTTTAGAT  290

seq1  TATACCAAAATGAGGAACATCAACTCAGAACCATCCAAAAACCTGTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAAAATGAGGAACATCAACTCAGAACCATCCAAAAACCTGTTCAT  340

seq1  TACTTTCTTCTTCTAGACAGTGTGGCATAAGAACACTTATAGCAAATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTTCTTCTAGACAGTGTGGCATAAGAACACTTATAGCAAATTAA  390

seq1  TTTGAATATGTTTTAAATTCTCTTACAAGTATAGACAATTGAGCATACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATATGTTTTAAATTCTCTTACAAGTATAGACAATTGAGCATACTC  440

seq1  TCCTGGCAGTGAGGTTATAATGTATAGCTGCTCTGAGAGTCAAAGAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCAGTGAGGTTATAATGTATAGCTGCTCTGAGAGTCAAAGAGGGC  490

seq1  TGCCGTCCTTTAGAGGCTAGGAAGAGGGGTGTGACTAGAAGCTTCACGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTCCTTTAGAGGCTAGGAAGAGGGGTGTGACTAGAAGCTTCACGCT  540

seq1  GGAGCTATTGCCTGAACTAAATCAACCAAGTCCATGTACTGGCGTAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTATTGCCTGAACTAAATCAACCAAGTCCATGTACTGGCGTAGATG  590

seq1  CTGTAAATGTTGAAAGAAGCAAATGTTCCTCAACCCCCAATTTTACTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATGTTGAAAGAAGCAAATGTTCCTCAACCCCCAATTTTACTACA  640

seq1  GGTTGGTCTCAAACTCATGATCTCCCTGCCTCTTCCTCCTTCAGCAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTCTCAAACTCATGATCTCCCTGCCTCTTCCTCCTTCAGCAAATC  690

seq1  CTAATGGCACATGCCACAACAACCAAAGATACCCAATTCTACTTCACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGCACATGCCACAACAACCAAAGATACCCAATTCTACTTCACAAG  740

seq1  TTGTGCAAGGAGCCACTTTAATGTAAGTGCTGCCACTGAGTATCATTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAAGGAGCCACTTTAATGTAAGTGCTGCCACTGAGTATCATTTTC  790

seq1  TTGGGACTCTGTCATGTTTCAGAATTC  827
      |||||||||||||||||||||||||||
seq2  TTGGGACTCTGTCATGTTTCAGAATTC  817