BAC Information

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BAC

Clone NameB6Ng01-111G14
Chromosome1 (Build37)
Map Location 84,977,341 - 85,176,832
singlet/doubletdoublet
Overlap geneLOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14
Downstream geneEG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111G14.bB6Ng01-111G14.g
ACCDH917762DH917763
length1,2081,097
definitionDH917762|Mus musculus domesticus DNA, BAC clone: B6Ng01-111G14, 5' end.DH917763|Mus musculus domesticus DNA, BAC clone: B6Ng01-111G14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,175,611 - 85,176,832)(84,977,341 - 84,978,363)
sequence
gaattcaataaaactgtcctgactcccactcactctggttagccccactg
attgcttcatgaaacatacatctgttgctgggttatggcaggagctgtcc
agatgtgctatttactaaagatggtagccagatatggtccttttatctcc
ccattttagtactaacttggtgagcagggagaggagatgataggcagagc
tgggtggatcaattcgaatttatctgtatgtctgccctgcttcatttctc
cctgacaagagtgatttgtgtctgtagctgatacaaaagcccagatagct
ctagaacaatctgaaaacaatacaggatgtggagagatgcaactccacag
aagtagagatgaaaatacctcaaggaagagaagataagtttgctctccct
gccatctgtgtagagactttgatggagtgggactgggagggagcctgcag
tgaactgtccatggtgctgagactaagtttgtgatcaagcctgcaatgga
ctgaaggggttgacatagatgaccctcttaacgtcagaaattagtctgag
gtgagagacaaaggacttgtccaagtccattttggtcaaaataagagaaa
acgtggactcaggtctttgcccaacactctgggtcaccttcttgtacaat
cactgctgggtgacaccctgtgtgtggcagagattgtatccactctttga
gagtctgcaggtcaaggcaggcagtcttgtagtggcccggggctctggac
ctttgtttcagctgcagcatcaaaattcttgttactctctcagacacagt
gagtagataggagcatcttgggtaggtattcagctgcatacgctgtatag
aaactaaaacttcttgcttcctctctgtggatggcggggacaccagacaa
tacaatgtcttccactcaaactggctttcaaaggaactatcctctccttg
tttgagatggcactgaaactctagaaggctaagtcatgctagccattctt
cctctcttaagtcccaagttcatagcctactgggaagaaatcaactgact
catcctggcaaattctagctgggcttgtgtcaaaagtttggccacaggat
tcagcagaccgccaaatgaattcttgctcctactgcgtggtggtgttttt
cttggtggaacatataggctctcctgaatatcctttattgaacatgttag
ctgtattt
gaattcagatatctgcttgctataagtaaagacaataagctagctgggtg
ggatccccaccactcctgggcttcaactagctctgtcccaggataacctt
gaattcaggaatctgcctgagtagtgcaaacaataaacttagctggaggg
atcttgccatgaaatcaccactctctaaatcttgttatttccttccttaa
tatctttctgacaaggtggctcacactgcagcagcctctgttttttaggt
ccatgaagcccccttcatgtaattcatactgcatccttatattttgcata
gttgagaatatattgaactcatgttgccaaaatcagtctatgagacagtt
ttattcatatccttcacctgtttgactatattttcttgtatttctttatg
tttatttgcttcctcattaatgcttttgcttgcttgaatgtattttcatg
tatttccttaaggaatttattcatttcttctttaaaggctcttattagct
ttattagattgaatttaaaatcctcttcttgtgcttcagtttcattagga
tatccagggtttgttgtagaaggatagctgcacacaactcacctctgtag
gctgtcccagatggatcaattgggatagtgggcaactcttactggaatgg
gattggttgggcagggttccaagttttggggttcttgaaggtttccacga
ggaagtaggattctcttggttcccacaagactcctctgggacgaagagtg
agtccagagctagacaatgtagctcaggggaccatgtgccaccccctgag
attgttctttagaggtgaaaacgaccaaaagactttgtgtattggagagt
gactagaacacaaagattcacattatatccatcaggttgactactaccaa
accaacaaaccaatagagacacattgttggcaaagttttagagaaaatgg
agcatggtccatggttagtagcatggtaaatgtgtgagatatagaaagag
cacggagtttcctttaaaacctggagcgggcatgggtggcacatgctttt
attcccagcactgggaggcgaaggcaggcagatttctagttcaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85175611_85176832
seq2: B6Ng01-111G14.b_45_1252 (reverse)

seq1  AAATACAAGCCTTAAACATGTTCAATAAAAGGTAATCCAGCAGACCTTAT  50
      |||||| |||    |||||||||||| |||||  || ||| ||| | |||
seq2  AAATAC-AGC---TAACATGTTCAAT-AAAGGATATTCAGGAGAGCCTAT  45

seq1  A-GTCCCACAATGAAAAACACCACACAGCAGTAGGGAGGCAAGATATCTC  99
      | || |||| | ||||||||||||   ||||||||   |||||| || ||
seq2  ATGTTCCACCAAGAAAAACACCACCACGCAGTAGG--AGCAAGA-AT-TC  91

seq1  AATTTGCTGTGCTGGCTG-ATTCTGCTGCCAAAACTTTGACACCAAGCCA  148
      | || || || || |||| || |||  ||||||  ||||||| |||||| 
seq2  ATTTGGCGGT-CT-GCTGAATCCTGTGGCCAAACTTTTGACA-CAAGCCC  138

seq1  GGCTGGAATTTGCCGGGATGAGTCAGGTGGAAATCTTCCCAGTAGGCTAT  198
       ||| ||||||||| |||||||||| || ||  |||||||||||||||||
seq2  AGCTAGAATTTGCCAGGATGAGTCA-GTTGATTTCTTCCCAGTAGGCTAT  187

seq1  GAACATGGGACTTAAGAAGGAGGAGGAATGGACTAGCATGACTTAGCCTT  248
      |||| ||||||||||||  ||||| |||||| ||||||||||||||||||
seq2  GAACTTGGGACTTAAGA--GAGGAAGAATGG-CTAGCATGACTTAGCCTT  234

seq1  CTAGAGTCTCAGTGGCATCTCGAACCAGGAGGAGGATAGTTCCTTTGAAA  298
      ||||||| |||||| |||||| ||| |||| |||||||||||||||||||
seq2  CTAGAGTTTCAGTGCCATCTCAAACAAGGA-GAGGATAGTTCCTTTGAAA  283

seq1  GCCACTTTGAGTGGACGACCTTATGTTGCCTCGTGGTCCTGCCATCCACA  348
      |||| |||||||||| ||| || | ||| || |||  || ||||||||||
seq2  GCCAGTTTGAGTGGAAGACATTGTATTGTCTGGTGTCCCCGCCATCCACA  333

seq1  GAGAGGAAGCAAG-AGTTTTAGTCTCTATAACAGCGTATGCAGTTGAATT  397
      ||||||||||||| ||||||||| ||||| ||||||||||||| |||| |
seq2  GAGAGGAAGCAAGAAGTTTTAGTTTCTAT-ACAGCGTATGCAGCTGAA-T  381

seq1  ACCTA-CCAAGATGCTTCCTATCTACTCACTGTGTCTGAGAGAGTAACAA  446
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACCTACCCAAGATGC-TCCTATCTACTCACTGTGTCTGAGAGAGTAACAA  430

seq1  GAATTTTGATGCTGCAGCTGAAAC-AAGGTCCAGAGCCCCGGGCCACTAC  495
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAATTTTGATGCTGCAGCTGAAACAAAGGTCCAGAGCCCCGGGCCACTAC  480

seq1  AAGACTGCCTGCCTTGACCTGCAAACTCTC-AAGAGTGGATACAATCTCT  544
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  AAGACTGCCTGCCTTGACCTGCAGACTCTCAAAGAGTGGATACAATCTCT  530

seq1  ACCACACACAGGGTGTCACCCAGCAGTGATTGTACAAGAAGGTGACCCAG  594
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACACAGGGTGTCACCCAGCAGTGATTGTACAAGAAGGTGACCCAG  580

seq1  AGTGTTGGGCAAAGACCTGAGTCCAAGTTTTCTCTTCTTTTGAACAAAAT  644
      ||||||||||||||||||||||||| |||||||||| |||||| ||||||
seq2  AGTGTTGGGCAAAGACCTGAGTCCACGTTTTCTCTTATTTTGACCAAAAT  630

seq1  GGACTTGGACAAGTCCTTTGTCTCTCACCTCAGACTCATTTCTAACGTTA  694
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  GGACTTGGACAAGTCCTTTGTCTCTCACCTCAGACTAATTTCTGACGTTA  680

seq1  AGAGGGTCATCTACTTCAACCCCTTCAGTCCATTGCAGGCTTGATCACAA  744
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  AGAGGGTCATCTATGTCAACCCCTTCAGTCCATTGCAGGCTTGATCACAA  730

seq1  ACTTAGTCTCAGCACCATGGACAGTTCACTGCAGGCTCCCTCCCAGTCCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTCTCAGCACCATGGACAGTTCACTGCAGGCTCCCTCCCAGTCCC  780

seq1  ACTCCATCAAAGTCTCTGCACTGATGGCAGGGAGAACAAACTTATCTTCT  844
      ||||||||||||||||| ||| ||||||||||||| ||||||||||||||
seq2  ACTCCATCAAAGTCTCTACACAGATGGCAGGGAGAGCAAACTTATCTTCT  830

seq1  CTTCCTTGAGGTATTTTCATCTCTACTTCTGTGGAGTTGCATCTCTCCAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGAGGTATTTTCATCTCTACTTCTGTGGAGTTGCATCTCTCCAC  880

seq1  CTCCTGTATTGTTTTCAGATTGTTCTAGAGCTATCTGGGCTTTTCTATCA  944
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCCTGTATTGTTTTCAGATTGTTCTAGAGCTATCTGGGCTTTTGTATCA  930

seq1  GCTACAGACACAAATCACTCTTGTCAGGGAGAAATGAAGCAGGGCAGACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGACACAAATCACTCTTGTCAGGGAGAAATGAAGCAGGGCAGACA  980

seq1  TACAGATAAATTCGAATTGATCCACCCAGCTCTGCCTATCATCTCCTCTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATAAATTCGAATTGATCCACCCAGCTCTGCCTATCATCTCCTCTC  1030

seq1  CCTGCTCACCAAGTTAGTACTAAAATGGGGAGATAAAAGGACCATATCTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCACCAAGTTAGTACTAAAATGGGGAGATAAAAGGACCATATCTG  1080

seq1  GCTACCATCTTTAGTAAATAGCACATCTGGACAGCTCCTGCCATAACCCA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCATCTTTAGTAAATAGCACATCTGGACAGCTCCTGCCATAACCCA  1130

seq1  GCAACAGCTGTATGTTTCATGAAGCAATCAGTGGGGCTAACCAGAGTGAG  1194
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGATGTATGTTTCATGAAGCAATCAGTGGGGCTAACCAGAGTGAG  1180

seq1  TGGGAGTCAGGACAGTTTTATTGAATTC  1222
      ||||||||||||||||||||||||||||
seq2  TGGGAGTCAGGACAGTTTTATTGAATTC  1208

seq1: chr1_84977341_84978363
seq2: B6Ng01-111G14.g_165_1167

seq1  AACCTTGAATTCAGGAATCTGCCTGAGTAGCCCAAACAATAAACTTAGCT  50
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  AACCTTGAATTCAGGAATCTGCCTGAGTAGTGCAAACAATAAACTTAGCT  50

seq1  GGTGGGATCTTGCCATGAAATCACCACTCTCTAAATCTTGTTATTTCCTT  100
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGATCTTGCCATGAAATCACCACTCTCTAAATCTTGTTATTTCCTT  100

seq1  CCTTAATATCTTTCTGACAA-ATGGCTCACACTGCAGCAGCCTCTGTTTT  149
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  CCTTAATATCTTTCTGACAAGGTGGCTCACACTGCAGCAGCCTCTGTTTT  150

seq1  TTAGGTCCATGAAGCCCCCTTCATGTAATTCATATTGCATCCTTATATTT  199
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTAGGTCCATGAAGCCCCCTTCATGTAATTCATACTGCATCCTTATATTT  200

seq1  TGCATAGTTGAGAATATATTGAACTCATGTTGCCAAACTCATTCTATGAG  249
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  TGCATAGTTGAGAATATATTGAACTCATGTTGCCAAAATCAGTCTATGAG  250

seq1  ACAGTTTTATTCATATCCTTCACCTGTTTGACTATATTTTCTTGTATTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTATTCATATCCTTCACCTGTTTGACTATATTTTCTTGTATTTC  300

seq1  TTTATGTTTATTTGCTTCCTCTTTTAATGCTTTTACTTACTTGAATGTAT  349
      |||||||||||||||||||||  ||||||||||| ||| |||||||||||
seq2  TTTATGTTTATTTGCTTCCTC-ATTAATGCTTTTGCTTGCTTGAATGTAT  349

seq1  TTTCATGTATTTCCTTAAGGAATTTATTCATGTCTTCTTTAAAGGCTTTT  399
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  TTTCATGTATTTCCTTAAGGAATTTATTCATTTCTTCTTTAAAGGCTCTT  399

seq1  ATTAGCTTCATTAGATTGAATTTAAAATCCTCTTCTTGTGCTTCAGTTTC  449
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTTTATTAGATTGAATTTAAAATCCTCTTCTTGTGCTTCAGTTTC  449

seq1  AATAGGATATCCAGGGTTTGTTGTAGAAGGATAGCTGCGCACAACTAACC  499
      | |||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  ATTAGGATATCCAGGGTTTGTTGTAGAAGGATAGCTGCACACAACTCACC  499

seq1  TCTGTAGGCTGTCCCAGATGGATCAATTGGGATAGTGGGCAACTCTTACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGCTGTCCCAGATGGATCAATTGGGATAGTGGGCAACTCTTACT  549

seq1  GGAATGGGATTGGTTGGGCAGGGTTCCAAGATCATTAGTTTTGGGGTTCT  599
      ||||||||||||||||||||||||||||        ||||||||||||||
seq2  GGAATGGGATTGGTTGGGCAGGGTTCCA--------AGTTTTGGGGTTCT  591

seq1  TGAAGGTTTCCACGGGGAAGTAGGATTCTCTTGGTTTCCCACAAGAGTCC  649
      |||||||||||||| ||||||||||||||||||| ||||||||||| |||
seq2  TGAAGGTTTCCACGAGGAAGTAGGATTCTCTTGG-TTCCCACAAGACTCC  640

seq1  TCTGGCCTGAAGAGTGAGTCCAGAGCTAGACAATGTAGCTCAGGGGACCA  699
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGACGAAGAGTGAGTCCAGAGCTAGACAATGTAGCTCAGGGGACCA  690

seq1  TGTGCCACCCCCTGAGATTGTTCTTTAGACGTGAAAACGACCAAAAGACT  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTGCCACCCCCTGAGATTGTTCTTTAGAGGTGAAAACGACCAAAAGACT  740

seq1  TTGTGTTATTGGAGAGTGAATAG-ACACAAAGATATCACATTATATCCAT  798
      ||||| ||||||||||||| ||| |||||||||| |||||||||||||||
seq2  TTGTG-TATTGGAGAGTGACTAGAACACAAAGAT-TCACATTATATCCAT  788

seq1  CAGGTTGACTACTACCAAAACCAACCAACCAAATAGAAGACAACATGTTG  848
      |||||||||||||||| |||||||| |||| ||||| |||||   |||||
seq2  CAGGTTGACTACTACC-AAACCAACAAACC-AATAG-AGACACATTGTTG  835

seq1  GCAAAGTTTTAGAGAAAATGGAGCATTGGTCCATTGTTAGTAGCATTGTA  898
      ||||||||||||||||||||||||| |||||||| ||||||||||| || 
seq2  GCAAAGTTTTAGAGAAAATGGAGCA-TGGTCCATGGTTAGTAGCATGGT-  883

seq1  AAATGTGTGAGAATATAGAAAGAAGCATGGACTTTCCTTTAAAAACTTGA  948
      ||||||||||| |||||||||| |||| ||| |||||||||||| || ||
seq2  AAATGTGTGAG-ATATAGAAAG-AGCACGGAGTTTCCTTTAAAACCTGGA  931

seq1  GCCGGGCAT-GGTGGCACATGCTTTTAATCCCAGCATGTGGGAGGCAGAG  997
      | ||||||| ||||||||||||||||| ||||||||  ||||||||  ||
seq2  G-CGGGCATGGGTGGCACATGCTTTTATTCCCAGCA-CTGGGAGGCGAAG  979

seq1  GCAGTCGGATTTCTGAGTTCAAGGCC  1023
      |||| | ||||||| ||||| |||||
seq2  GCAGGCAGATTTCT-AGTTC-AGGCC  1003