BAC Information

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BAC

Clone NameB6Ng01-111K08
Chromosome1 (Build37)
Map Location 171,837,830 - 171,983,329
singlet/doubletdoublet
Overlap gene1700084C01Rik, Hsd17b7, Ddr2
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960
Downstream geneLOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111K08.bB6Ng01-111K08.g
ACCDH917934DH917935
length1,1471,056
definitionDH917934|Mus musculus domesticus DNA, BAC clone: B6Ng01-111K08, 5' end.DH917935|Mus musculus domesticus DNA, BAC clone: B6Ng01-111K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,837,830 - 171,838,984)(171,982,249 - 171,983,329)
sequence
gaattctgtatgcaaaagatgggtgcatattataaaagggagttgggggg
gggcaagaaagggaagacactcatttcatcaagccatttactgtttctca
atacaagttattcattacatgtattgattatagctataacccacagttat
ttaacattggtatacatttccttaagtcagaatctggcatctactagaag
actctatacttttaattttcccattcctatttatcttattaattttttta
tctccattttctcctgctaactaagagtagagaacttgcttccacctttg
gctaaaaagctagtggtggtcacgtgacttctctgctcaaaataaatcgt
gattacttttgtgatcttcctaggcagtgacagacatcacttctaatgat
agtttgaataggaatgataggaatggcccccacaggttcttagggaatgg
tgtaatttgagaggaattaggaggtgtcaccttgttagaatagatgtagc
cttgttggtggaagtatgtcacagagagtgagctttggggtttcaaaagc
tcaagccaggcccagagtctctctcttcctgctgcctggagatctggatg
cagaactctctgttactcctctcttcctgatgcttttggattcgaatgtt
gaactctcaggtaccatgtctgcctgcaagctgccctgcttcctgccatg
agaataaaagaataaacctctgaacctgtaagccagacccaattaagggc
tttctttggtaagagttgctatagtcatggtgtctcatcacagcaataaa
atgctgactaaggctctccttttgataaaagggctcaactgttctttctt
ttaaaaaaaaacaaaagatttattatatgtaaatacactgtagctttctt
cagacactccagaagagggagtcattatctcattacagatggtatgagcc
ccatgtagttgttgggatttgaactcaggaagagcagtcagtggctctta
actgctagccatttctccagcctcaactgttcttcattgcctaggtgcca
tatgaactccactgtggttcctgggttctgagggatacaaagactaaccc
aaagagtaagcactcatgctacaggttttttttttccgtgaaataaa
gaattccatggatccagcagagcatctgacccacaggggacacggaaatt
gcatcgtttacagcaggcaacactaacataggcttcacttagcagaagtt
cacaactgaagcactcggaaatgtgggcatggcagtactacactgggcaa
atgatgaccctgtagatggactgagcaggaatatctggccacccttccct
gaagtccctttaccctctcaggcctctgggctcagagttcacaggctgag
ggtgtgtttgcttggctgtgactatcccctcagtttctctttctgggtat
cttatttcataagctgagcctgccacagagctctgggattctgctggctt
tagtctgagcctctggctttcattgctgcccttctagccagatctgggaa
agggtttgaaaaatgacactgattggatgcacatttgatgaaggtgatgg
atggtcaggcaactctgagtccctagacccagatataattgacaggtgta
ccctcctgatgggagccaagacccagacttcttaagagaggccccctccc
actcctctccacccacacccctactgtttgcctagctctttctgcagaga
cccaagggagctatgggcctttccctgcccctggtcctcactcagccacc
tctgtctccttggtgctgaaaaaccccgcctgtgttagtcttctatttgg
ggctgcagagtctcttcccatcccattactgaacacatgccttggctttg
tgctggggacctagtatctccattgccttgctatgtcggacccctcttct
tgtgccttcccgccttttccgtggatcttccattctcatggagcatttta
gctagatcttgaattaagtcttattaggggagcttcagagcacatttgtg
acactctttctctgttttcgatttcagagattcatggttggggtacagct
agagatgcatgtctgaaaggtgaattcagactatttgaagagagcagact
gccccagcagtttagagatcaccaatattgggtttactgtctgctagaga
gtcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_171837830_171838984
seq2: B6Ng01-111K08.b_50_1196

seq1  GAATTCTGTATGCAAAAGATGGGTGCATATTATAAAAGGGAGTTGGGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATGCAAAAGATGGGTGCATATTATAAAAGGGAGTTGGGGGG  50

seq1  GGGCAAGAAAGGGAAGACACTCATTTCATCAAGCCATTTACTGTTTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGAAAGGGAAGACACTCATTTCATCAAGCCATTTACTGTTTCTCA  100

seq1  ATACAAGTTATTCATTACATGTATTGATTATAGCTATAACCCACAGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTTATTCATTACATGTATTGATTATAGCTATAACCCACAGTTAT  150

seq1  TTAACATTGGTATACATTTCCTTAAGTCAGAATCTGGCATCTACTAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTGGTATACATTTCCTTAAGTCAGAATCTGGCATCTACTAGAAG  200

seq1  ACTCTATACTTTTAATTTTCCCATTCCTATTTATCTTATTAATTTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATACTTTTAATTTTCCCATTCCTATTTATCTTATTAATTTTTTTA  250

seq1  TCTCCATTTTCTCCTGCTAACTAAGAGTAGAGAACTTGCTTCCACCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTTTCTCCTGCTAACTAAGAGTAGAGAACTTGCTTCCACCTTTG  300

seq1  GCTAAAAAGCTAGTGGTGGTCACGTGACTTCTCTGCTCAAAATAAATCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAAGCTAGTGGTGGTCACGTGACTTCTCTGCTCAAAATAAATCGT  350

seq1  GATTACTTTTGTGATCTTCCTAGGCAGTGACAGACATCACTTCTAATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTTTTGTGATCTTCCTAGGCAGTGACAGACATCACTTCTAATGAT  400

seq1  AGTTTGAATAGGAATGATAGGAATGGCCCCCACAGGTTCTTAGGGAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAATAGGAATGATAGGAATGGCCCCCACAGGTTCTTAGGGAATGG  450

seq1  TGTAATTTGAGAGGAATTAGGAGGTGTCACCTTGTTAGAATAGATGTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTGAGAGGAATTAGGAGGTGTCACCTTGTTAGAATAGATGTAGC  500

seq1  CTTGTTGGTGGAAGTATGTCACAGAGAGTGAGCTTTGGGGTTTCAAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGGTGGAAGTATGTCACAGAGAGTGAGCTTTGGGGTTTCAAAAGC  550

seq1  TCAAGCCAGGCCCAGAGTCTCTCTCTTCCTGCTGCCTGGAGATCTGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCAGGCCCAGAGTCTCTCTCTTCCTGCTGCCTGGAGATCTGGATG  600

seq1  CAGAACTCTCTGTTACTCCTCTCTTCCTGATGCTTTTGGATTCGAATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCTCTGTTACTCCTCTCTTCCTGATGCTTTTGGATTCGAATGTT  650

seq1  GAACTCTCAGGTACCATGTCTGCCTGCAAGCTGCCCTGCTTCCTGCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTCAGGTACCATGTCTGCCTGCAAGCTGCCCTGCTTCCTGCCATG  700

seq1  AGAATAAAAGAATAAACCTCTGAACCTGTAAGCCAGACCCAATTAAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAAGAATAAACCTCTGAACCTGTAAGCCAGACCCAATTAAGGGC  750

seq1  TTTCTTTGGTAAGAGTTGCTATAGTCATGGTGTCTCATCACAGCAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGGTAAGAGTTGCTATAGTCATGGTGTCTCATCACAGCAATAAA  800

seq1  ATGCTGACTAAGGCTCTCCTTTTGATAAAAGGGCTCAACTGTTCTTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGACTAAGGCTCTCCTTTTGATAAAAGGGCTCAACTGTTCTTTCTT  850

seq1  TTAAAAAAAAACAAAAGATTTATTATATGTAAATACACTGTAGCTTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAACAAAAGATTTATTATATGTAAATACACTGTAGCTTTCTT  900

seq1  CAGACACTCCAGAAGAGGGAGTCA-TATCTCATTACAGATGGTTATGAGC  949
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  CAGACACTCCAGAAGAGGGAGTCATTATCTCATTACAGATGG-TATGAGC  949

seq1  CCCATGTAGTTGTTGGGATTTGAACTCAGGAAGAGCAGTCAGT-GCTCTT  998
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCATGTAGTTGTTGGGATTTGAACTCAGGAAGAGCAGTCAGTGGCTCTT  999

seq1  AACTGCTAAGCCATTTCTCCAGCCCTCAACTGTTCTTCCAATTGCCTAGG  1048
      ||||||| |||||||||||||| |||||||||||||||  ||||||||||
seq2  AACTGCT-AGCCATTTCTCCAG-CCTCAACTGTTCTTC--ATTGCCTAGG  1045

seq1  TGCCATGTGAACT-CACTGTGGTCCCTGGGTTCTGAGGGGATTACAAAGA  1097
      |||||| |||||| ||||||||| |||||||||||||||   ||||||| 
seq2  TGCCATATGAACTCCACTGTGGTTCCTGGGTTCTGAGGG--ATACAAAG-  1092

seq1  ACTAACTCAAAAGAGTAAGCACTCTATGCTACAGGGTTTTTTTTTTCTGT  1147
      |||||| | ||||||||||||||| |||||||| ||||||||||||| ||
seq2  ACTAAC-CCAAAGAGTAAGCACTC-ATGCTACA-GGTTTTTTTTTTCCGT  1139

seq1  GAAATAAA  1155
      ||||||||
seq2  GAAATAAA  1147

seq1: chr1_171982249_171983329
seq2: B6Ng01-111K08.g_69_1124 (reverse)

seq1  TATGACTTCTCTAGCAGACCAGTTAAACCCAATATTTGGGTTGTTCTCTA  50
      |||||| ||||||||||| ||| |||||||||||||   | || ||||||
seq2  TATGAC-TCTCTAGCAGA-CAG-TAAACCCAATATT---GGTGATCTCTA  44

seq1  AACTGCTGGGGGCAGGTCTTGGCTCTCTTTCAAATAGTCTGGAATTCCAC  100
      ||||||| |||||| ||||  |||||| |||||||||||| ||||||   
seq2  AACTGCT-GGGGCA-GTCT--GCTCTC-TTCAAATAGTCT-GAATTC--A  86

seq1  CCTTTCCAAGACATGCATCTTCTAGCTGGTTAACCCCAACCCATGAAATC  150
      ||||||  ||||||||||| ||||||||    ||||||| ||||| ||||
seq2  CCTTTC--AGACATGCATC-TCTAGCTG---TACCCCAA-CCATG-AATC  128

seq1  TCTGAAATTCGAAAACAGAGAAAGAGTTGTCACAAATGTGCTCTGAAGCT  200
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  TCTGAAA-TCGAAAACAGAGAAAGAG-TGTCACAAATGTGCTCTGAAGCT  176

seq1  CCCCTAATAAGACCTTAATTCAAGATCTAGCTAAAATGCTCCATGAGAAT  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCCCTAATAAGA-CTTAATTCAAGATCTAGCTAAAATGCTCCATGAGAAT  225

seq1  GGAAGATCCACGGAAAAGGCGGGAAGGCACAAGAAGAGGGGTCCGACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATCCACGGAAAAGGCGGGAAGGCACAAGAAGAGGGGTCCGACATA  275

seq1  GCAAGGCAATGGAGATACTAGGTCCCCAGCACAAAGCCAAGGCATGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCAATGGAGATACTAGGTCCCCAGCACAAAGCCAAGGCATGTGTT  325

seq1  CAGTAATGGGATGGGAAGAGACTCTGCAGCCCCAAATAGAAGACTAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATGGGATGGGAAGAGACTCTGCAGCCCCAAATAGAAGACTAACAC  375

seq1  AGGCGGGGTTTTTCAGCACCAAGGAGACAGAGGTGGCTGAGTGAGGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGGGTTTTTCAGCACCAAGGAGACAGAGGTGGCTGAGTGAGGACCA  425

seq1  GGGGCAGGGAAAGGCCCATAGCTCCCTTGGGTCTCTGCAGAAAGAGCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGGAAAGGCCCATAGCTCCCTTGGGTCTCTGCAGAAAGAGCTAG  475

seq1  GCAAACAGTAGGGGTGTGGGTGGAGAGGAGTGGGAGGGGGCCTCTCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGTAGGGGTGTGGGTGGAGAGGAGTGGGAGGGGGCCTCTCTTAA  525

seq1  GAAGTCTGGGTCTTGGCTCCCATCAGGAGGGTACACCTGTCAATTATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTGGGTCTTGGCTCCCATCAGGAGGGTACACCTGTCAATTATATC  575

seq1  TGGGTCTAGGGACTCAGAGTTGCCTGACCATCCATCACCTTCATCAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTAGGGACTCAGAGTTGCCTGACCATCCATCACCTTCATCAAATG  625

seq1  TGCATCCAATCAGTGTCATTTTTCAAACCCTTTCCCAGATCTGGCTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCAATCAGTGTCATTTTTCAAACCCTTTCCCAGATCTGGCTAGAA  675

seq1  GGGCAGCAATGAAAGCCAGAGGCTCAGACTAAAGCCAGCAGAATCCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCAATGAAAGCCAGAGGCTCAGACTAAAGCCAGCAGAATCCCAGA  725

seq1  GCTCTGTGGCAGGCTCAGCTTATGAAATAAGATACCCAGAAAGAGAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGGCAGGCTCAGCTTATGAAATAAGATACCCAGAAAGAGAAACT  775

seq1  GAGGGGATAGTCACAGCCAAGCAAACACACCCTCAGCCTGTGAACTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGATAGTCACAGCCAAGCAAACACACCCTCAGCCTGTGAACTCTGA  825

seq1  GCCCAGAGGCCTGAGAGGGTAAAGGGACTTCAGGGAAGGGTGGCCAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGGCCTGAGAGGGTAAAGGGACTTCAGGGAAGGGTGGCCAGATA  875

seq1  TTCCTGCTCAGTCCATCTACAGGGTCATCATTTGCCCAGTGTAGTACTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTCAGTCCATCTACAGGGTCATCATTTGCCCAGTGTAGTACTGC  925

seq1  CATGCCCACATTTCCGAGTGCTTCAGTTGTGAACTTCTGCTAAGTGAAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCACATTTCCGAGTGCTTCAGTTGTGAACTTCTGCTAAGTGAAGC  975

seq1  CTATGTTAGTGTTGCCTGCTGTAAACGATGCAATTTCCGTGTCCCCTGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTAGTGTTGCCTGCTGTAAACGATGCAATTTCCGTGTCCCCTGTG  1025

seq1  GGTCAGATGCTCTGCTGGATCCATGGAATTC  1081
      |||||||||||||||||||||||||||||||
seq2  GGTCAGATGCTCTGCTGGATCCATGGAATTC  1056