BAC Information

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BAC

Clone NameB6Ng01-111M04
Chromosome1 (Build37)
Map Location 54,432,523 - 54,571,741
singlet/doubletdoublet
Overlap geneGtf3c3, EG627915, D230012E17Rik
Upstream geneEG627866, LOC100042162, Dnahc7, Stk17b, Hecw2, 4930511H11Rik
Downstream geneAnkrd44, Sf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111M04.bB6Ng01-111M04.g
ACCDH918020DH918021
length1,1621,029
definitionDH918020|Mus musculus domesticus DNA, BAC clone: B6Ng01-111M04, 5' end.DH918021|Mus musculus domesticus DNA, BAC clone: B6Ng01-111M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,432,523 - 54,433,700)(54,570,694 - 54,571,741)
sequence
gaattcaaggctctttcccactttctcttctattagattcagtgtatctg
gttttatgttgagatctttgatccacttggacttgagttttgtgcaaggt
gacaaagtaagtttattttcatttttctacatacaaacagccagttaaac
cagcaccatttattgaagatgttttcttttttccattgtatattttggca
tctttgtcaaagatcaagtgtccgtaagtgtatggttttatttctgggtc
ttcagttctattccattgatcaacacatctgtctctgtaccaataccatg
cagttctttatcactgtagctctgtagtaaagcttgaggtcagggatggt
gaattcccccagctgttcttttattgttaaggattgttttcactattctg
ggttcttttgcctgagaaatccatccatttcttttatatattcttgtttt
gttttgggagattttgttttgtttgagaaaaggtcacactatgtatccct
agggtaccttcaaactcacagacatctatgtccctttgcctcttgagtac
tagggccaaaaataaacattaatatttttgaattttttagattttgtaac
ttaatgaattttaaagtattctcttttcagaccgggccagctcacaggat
gtgtgactagggtttgggaagttgcatgccggcaggttcaggaaatttac
caggctagacctgtacatggctctgagacccaaaatagacctaagaattg
gatgtggtacagtaggctaggtgcaggcattcagactacattctaccagc
acacaggatatgtggcaggccaagctccaaggctgggagtagttcagaca
agactcttcagactgcatgctttgatttatttttgagagtactgatcctt
ctgaagcctggagataatgcctaacttattggatcaagggatagacagtg
gttctacattgtctatatgtgacaccattagagcatggcctaacctttcc
attattgtaaacttaagagatctatatgaactctatataaactttgctcc
agatttaatatgcctgtgaagttgttagtcttcataagatccatctcatt
gattaaagtttgctggatagtgcttggttgggcatctgtgcctctaggtc
tgcagaacatct
gaattctttaagaaagaagcgagatccatgcagctccctgtgactcacct
tttttcctttggtaagtattttgtttttgaagcttaagcacagcttttag
cagtgctgactggctttgccagtcgtagaatattaaatattagcatgtcc
caagtagagtgcttaggaaacagtgtggtcgcgagcagtggtttgattgt
cagcctctgaggttgaaggttagacaggcctggtctcaggtctttttctc
ttgctgtgataaggcaccatgaccaaggcaatttataaaagaaagactgt
aattagagaacagagtggccgagcaagcatggaggctgggaagctgaggg
gatcccagaggaggagggagagaggggctggaaagcacagcaaggccaca
cctcctaatccttctcaaactcttccgctaggaacaaattactcaagcac
ataaacctactggggccattttcattacaaatcactctgtattttcccat
atttatataaaatgcaggaaccaggtgcttctatatgtgtatttacttat
atgatactggtccattttagaggttttttttgtttttgtttttgttttgt
tttttttttgtttttcacagaacaagctttgatttttattatttaaataa
acctcacttgtttcttattctggttctgtgcttgtgccttcaacactgtc
attgtaattttctgacacacagcatatctaaattcttgtctgtctaatga
aggtttctcaactatatgttaatagattatttatgtgtatggaagttttg
cttgcatatattttttttttgtgtgtgtgtaccatgtatgtgcagtacct
atagaggccagaagagggcaacagatccttgttattattaattacaggag
tagatgctaataaatctaatgttcaccgtgttactttgatctttgttata
aatgatgtcatgacttctctactatgtatactgttttattttttacatac
atatcttgtagaattattgaaaaaaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_54432523_54433700
seq2: B6Ng01-111M04.b_47_1208

seq1  GAATTCAAGGCTCTTTCCCACTTTCTCTTCTATTAGATTCAGTGTATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTCTTTCCCACTTTCTCTTCTATTAGATTCAGTGTATCTG  50

seq1  GTTTTATGTTGAGATCTTTGATCCACTTGGACTTGAGTTTTGTGCAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGTTGAGATCTTTGATCCACTTGGACTTGAGTTTTGTGCAAGGT  100

seq1  GACAAAGTAAGTTTATTTTCATTTTTCTACATACAAACAGCCAGTTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTAAGTTTATTTTCATTTTTCTACATACAAACAGCCAGTTAAAC  150

seq1  CAGCACCATTTATTGAAGATGTTTTCTTTTTTCCATTGTATATTTTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCATTTATTGAAGATGTTTTCTTTTTTCCATTGTATATTTTGGCA  200

seq1  TCTTTGTCAAAGATCAAGTGTCCGTAAGTGTATGGTTTTATTTCTGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCAAAGATCAAGTGTCCGTAAGTGTATGGTTTTATTTCTGGGTC  250

seq1  TTCAGTTCTATTCCATTGATCAACACATCTGTCTCTGTACCAATACCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCTATTCCATTGATCAACACATCTGTCTCTGTACCAATACCATG  300

seq1  CAGTTCTTTATCACTGTAGCTCTGTAGTAAAGCTTGAGGTCAGGGATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTTATCACTGTAGCTCTGTAGTAAAGCTTGAGGTCAGGGATGGT  350

seq1  GAATTCCCCCAGCTGTTCTTTTATTGTTAAGGATTGTTTTCACTATTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCAGCTGTTCTTTTATTGTTAAGGATTGTTTTCACTATTCTG  400

seq1  GGTTCTTTTGCCTGAGAAATCCATCCATTTCTTTTATATATTCTTGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTTGCCTGAGAAATCCATCCATTTCTTTTATATATTCTTGTTTT  450

seq1  GTTTTGGGAGATTTTGTTTTGTTTGAGAAAAGGTCACACTATGTATCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGGAGATTTTGTTTTGTTTGAGAAAAGGTCACACTATGTATCCCT  500

seq1  AGGGTACCTTCAAACTCACAGACATCTATGTCCCTTTGCCTCTTGAGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACCTTCAAACTCACAGACATCTATGTCCCTTTGCCTCTTGAGTAC  550

seq1  TAGGGCCAAAAATAAACATTAATATTTTTGAATTTTTTAGATTTTGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCCAAAAATAAACATTAATATTTTTGAATTTTTTAGATTTTGTAAC  600

seq1  TTAATGAATTTTAAAGTATTCTCTTTTCAGACCGGGCCAGCTCACAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAATTTTAAAGTATTCTCTTTTCAGACCGGGCCAGCTCACAGGAT  650

seq1  GTGTGACTAGGGTTTGGGAAGTTGCATGCCGGCAGGTTCAGGAAATTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACTAGGGTTTGGGAAGTTGCATGCCGGCAGGTTCAGGAAATTTAC  700

seq1  CAGGCTAGACCTGTACATGGCTCTGAGACCCAAAATAGACCTAAGAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGACCTGTACATGGCTCTGAGACCCAAAATAGACCTAAGAATTG  750

seq1  GATGTGGTACAGTAGGCTAGGTGCAGGCATTCAGACTACATTCTACCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGTACAGTAGGCTAGGTGCAGGCATTCAGACTACATTCTACCAGC  800

seq1  ACACAGGATATGTGGCAGGGCCAAGCTCCAAGGCTGGGAGTAGTTCAGAC  850
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACACAGGATATGTGGCA-GGCCAAGCTCCAAGGCTGGGAGTAGTTCAGAC  849

seq1  AAGACTCTTCAGACTGCATGCTTTGATTTATTTTTGAGAGTACTGATCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTTCAGACTGCATGCTTTGATTTATTTTTGAGAGTACTGATCCT  899

seq1  TCTGAAGCCTGGAGATAATGCCTAACTTATTGGATCAAGGGATAGACAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCCTGGAGATAATGCCTAACTTATTGGATCAAGGGATAGACAGT  949

seq1  GGTTCTACATTGTCTATATTGTTGACACCATTAGAGCATGGCCTAACCTT  1000
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  GGTTCTACATTGTCTATAT--GTGACACCATTAGAGCATGGCCTAACCTT  997

seq1  TCCATATTTGTAAAACTTAAGAGGAATCTATATGAACTCTATATAAACTT  1050
      |||||  |||| |||||||||||  |||||||||||||||||||||||||
seq2  TCCATTATTGT-AAACTTAAGAG--ATCTATATGAACTCTATATAAACTT  1044

seq1  TGCTCCCAGATTTAATATGCCTGTGAAGTTGTTTAGTCTTAAT-AGATCC  1099
      |||| |||||||||||||||||||||||||| |||||||| || ||||||
seq2  TGCT-CCAGATTTAATATGCCTGTGAAGTTG-TTAGTCTTCATAAGATCC  1092

seq1  ATCTGTAGTGATTAAAAGTTTTGCTGGGTATAGTAGTCTTGGTT-GGCAT  1148
      ||||  | ||||||||   ||||||||  |||||   ||||||| |||||
seq2  ATCT-CATTGATTAAA--GTTTGCTGG--ATAGT--GCTTGGTTGGGCAT  1135

seq1  CTGTGGTCTCTTAGGGTCTGCAAGACATCT  1178
      |||| | ||||   ||||||||  ||||||
seq2  CTGT-GCCTCT--AGGTCTGCAGAACATCT  1162

seq1: chr1_54570694_54571741
seq2: B6Ng01-111M04.g_66_1094 (reverse)

seq1  ACATTTTTTTCAAATTATTTCCTACAAGATATTTGTAATGGTAAAAAATA  50
      |||||||||||||  || || ||||||||||| | |    ||||||||||
seq2  ACATTTTTTTCAA--TAATT-CTACAAGATATGTAT----GTAAAAAATA  43

seq1  AAAACCAGTAATTACATAGTAGAGAAGTCATTGACATACAATTTTAATAA  100
      |||  |||||  |||||||||||||||||| |||||| || || |||   
seq2  AAA--CAGTA--TACATAGTAGAGAAGTCA-TGACAT-CATTTATAA---  84

seq1  ACAAAAGATCAAAGTTAACACCGTGAACAATTAGATTTATTAGCATCTAC  150
         ||||||||||| |||||| |||||| |||||||||||||||||||||
seq2  --CAAAGATCAAAG-TAACACGGTGAAC-ATTAGATTTATTAGCATCTAC  130

seq1  TCCTGTAATTAATAATAACAAGGATCTGTTGCCCTCTTCTGGCCTCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAATTAATAATAACAAGGATCTGTTGCCCTCTTCTGGCCTCTATA  180

seq1  GGTACTGCACATACATGGTACACACACAC-AAAAAAAAATATATGCAAGC  249
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTACTGCACATACATGGTACACACACACAAAAAAAAAATATATGCAAGC  230

seq1  AAAACTTCCATACACATAAATAATCTATTAACATATAGTTGAGAAACCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTCCATACACATAAATAATCTATTAACATATAGTTGAGAAACCTT  280

seq1  CATTAGACAGACAAGAATTTAGATATGCTGTGTGTCAGAAAATTACAATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGACAGACAAGAATTTAGATATGCTGTGTGTCAGAAAATTACAATG  330

seq1  ACAGTGTTGAAGGCACAAGCACAGAACCAGAATAAGAAACAAGTGAGGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTGAAGGCACAAGCACAGAACCAGAATAAGAAACAAGTGAGGTT  380

seq1  TATTTAAATAATAAAAATCAAAGCTTGTTCTGTGAAAAACAAAAAAAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAATAATAAAAATCAAAGCTTGTTCTGTGAAAAACAAAAAAAAAA  430

seq1  CAAAACAAAAACAAAAACAAAAAAAACCTCTAAAATGGACCAGTATCATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAAACAAAAACAAAAAAAACCTCTAAAATGGACCAGTATCATA  480

seq1  TAAGTAAATACACATATAGAAGCACCTGGTTCCTGCATTTTATATAAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAATACACATATAGAAGCACCTGGTTCCTGCATTTTATATAAATA  530

seq1  TGGGAAAATACAGAGTGATTTGTAATGAAAATGGCCCCAGTAGGTTTATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAATACAGAGTGATTTGTAATGAAAATGGCCCCAGTAGGTTTATG  580

seq1  TGCTTGAGTAATTTGTTCCTAGCGGAAGAGTTTGAGAAGGATTAGGAGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAGTAATTTGTTCCTAGCGGAAGAGTTTGAGAAGGATTAGGAGGT  630

seq1  GTGGCCTTGCTGTGCTTTCCAGCCCCTCTCTCCCTCCTCCTCTGGGATCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTGCTGTGCTTTCCAGCCCCTCTCTCCCTCCTCCTCTGGGATCC  680

seq1  CCTCAGCTTCCCAGCCTCCATGCTTGCTCGGCCACTCTGTTCTCTAATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTTCCCAGCCTCCATGCTTGCTCGGCCACTCTGTTCTCTAATTA  730

seq1  CAGTCTTTCTTTTATAAATTGCCTTGGTCATGGTGCCTTATCACAGCAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTCTTTTATAAATTGCCTTGGTCATGGTGCCTTATCACAGCAAG  780

seq1  AGAAAAAGACCTGAGACCAGGCCTGTCTAACCTTCAACCTCAGAGGCTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGACCTGAGACCAGGCCTGTCTAACCTTCAACCTCAGAGGCTGA  830

seq1  CAATCAAACCACTGCTCGCGACCACACTGTTTCCTAAGCACTCTACTTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAACCACTGCTCGCGACCACACTGTTTCCTAAGCACTCTACTTGG  880

seq1  GACATGCTAATATTTAATATTCTACGACTGGCAAAGCCAGTCAGCACTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCTAATATTTAATATTCTACGACTGGCAAAGCCAGTCAGCACTGC  930

seq1  TAAAAGCTGTGCTTAAGCTTCAAAAACAAAATACTTACCAAAGGAAAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTGTGCTTAAGCTTCAAAAACAAAATACTTACCAAAGGAAAAAA  980

seq1  GGTGAGTCACAGGGAGCTGCATGGATCTCGCTTCTTTCTTAAAGAATTC  1048
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTCACAGGGAGCTGCATGGATCTCGCTTCTTTCTTAAAGAATTC  1029