BAC Information

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BAC

Clone NameB6Ng01-111O18
Chromosome1 (Build37)
Map Location 74,834,650 - 75,034,521
singlet/doubletdoublet
Overlap geneWnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6
Downstream geneSlc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111O18.bB6Ng01-111O18.g
ACCDH918130DH918131
length9221,089
definitionDH918130|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O18, 5' end.DH918131|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,033,604 - 75,034,521)(74,834,650 - 74,835,728)
sequence
gaattcagtctgtggaacctgcataaaaatggaaagagataactgactcc
acaaaaagtgtcttctaacctccacatgtatgctatagcatgcatgtttc
cacacagacataacacacacacacacactccattcagcatcaaactttac
tattccaattcctgtgttttcttaccatataatatatatatatatatata
tatatatatatatatatatatatatattcattcaaagtaagtactgtttg
gtggtggtaagtagcatgttaatatgatatacaaggacaaggtggctcat
tgaacaaaggtgcttgctacacaagcctgacacctgaatatatatatctt
gtgtgtgagcctcccaggaccactagatgatctagtgacgctgtatcacc
aggatctactgatcccagctacttcttcatatctattccttttcaaatta
gaggttattccaagatacatctgcagtagatgcacttagactgttgatct
aaaattgcaaagttcttacactagaacaacacaatgcttactacattccc
aaagatcagcagagattaatgctaaggacacaaattctcctaacctaggg
ctgaatttggaactggaatgtagagatttccagagaatttcattttccca
actaggtagagtagagtgcttgcctcaaaatgcatgacaccttgggttca
tttcctagtatgaaaaaaaaaatctcatttccctaagacaagctaatata
gatttacttgcaaacattgctccccacgtgagggcctccttgttggcctc
cctgcagttgtaataagtaattatagtaggtcatttgcagctgtattttg
gaccacagctattaaatgctggttcctgtgaacttcctttcctctattca
agccagtatgctcttcaagatt
gaattcaagagcaggaagccccagtggtaggactaaggggaagcctagag
acccacggacagcttgggtcaagccgatagggttcaggctgtctgagacc
tctaggctgtccagacataggactgggatgatcctggaagggtgttctga
ggcgagatgatgttgaatcctttgcgaagccagaaaagcagagaccaggg
caaatgataaaaaccgacatcactccaggcagttcaaaaggaaggtaaaa
tgtagttttgttttgatttttaagccttgagcaagtcagctaagcagcaa
acccgtttgcctcattcggtgatagtacactgctggctacagtcttggca
ggaggtgtgttagagagagggtttctctgtgtggccctgaatgtactgga
actagttctgtagttctcaaactcagagatccgcctgcctctgcttccct
ggtacagtgattaaaggtgtgtgccatcatgcccactcgccatcggcctt
taaattgctagtcacacagcagtgatccaccttttgctaccaagtctggg
tactccctaacttgaggtgtgataatcctgaacaggaggcatggctggag
gtcacgagcctgttcctctttaagcatggagatggctctgtgcccctgca
ctgctgtctaagaatgaagagacggtgctcatcagggcccactggcttcc
ccttctctagcttcccagatgctcagccccaggcacaggcaaggtcccct
gctggctgaggggcgagggacatgtggaactttgagcaaggggaagaaga
cagaggcaccccagatgtgtgttgtgtgtttgcatcaggaaaggcagaac
cacaggcagattagatgggattaggagctgagttgagcacctaggatgag
tctgagggccacgtgcctcccagctcatctccctttacctttgatagcca
cgcctaagggatctggggacacggaagctgtgagctatttctccttacct
ggctgaggaagggacaccccagagaaggaggggtcccttgtcaatctaag
agcattctccccttttttcttcacaagaccatcttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_75033604_75034521
seq2: B6Ng01-111O18.b_47_968 (reverse)

seq1  AATC-TGAAGAGCATACTAGCTTGAATAGAGG-AAGGAAGTTCACAGGAA  48
      |||| ||||||||||||| ||||||||||||| |||||||||||||||||
seq2  AATCTTGAAGAGCATACTGGCTTGAATAGAGGAAAGGAAGTTCACAGGAA  50

seq1  CCAGCCATCTAATAGCTGTGGTCCAAATTACAGCTGCCAATGACCTACTA  98
      |||| ||| |||||||||||||||||| ||||||||| ||||||||||||
seq2  CCAG-CATTTAATAGCTGTGGTCCAAAATACAGCTGCAAATGACCTACTA  99

seq1  TAATTACTTA-TACAACTGCAGGGAGGCCAACAAGGAGG-CCTCACGTGG  146
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  TAATTACTTATTACAACTGCAGGGAGGCCAACAAGGAGGCCCTCACGTGG  149

seq1  GGAGCAATGTTTTGCAAGT-AATCTATATTAGCTTGTCTTAGGGAAATGA  195
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  GGAGCAATG-TTTGCAAGTAAATCTATATTAGCTTGTCTTAGGGAAATGA  198

seq1  GATTTTTTTTTTCATACTAGGAATTGAACCCAAGGTGTCATGCA-TTTGA  244
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  GATTTTTTTTTTCATACTAGGAAATGAACCCAAGGTGTCATGCATTTTGA  248

seq1  GGCAAGCACTCTACTCTACCTAGTTGGGAAAATGAAATTCTCTGGAAATC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCACTCTACTCTACCTAGTTGGGAAAATGAAATTCTCTGGAAATC  298

seq1  TCTACATTCCAGTTCCAAATTCAGCCCTAGGTTAGGAGAATTTGTGTCCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTCCAGTTCCAAATTCAGCCCTAGGTTAGGAGAATTTGTGTCCT  348

seq1  TAGCATTAATCTCTGCTGATCTTTGGGAATGTAGTAAGCATTGTGTTGTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTAATCTCTGCTGATCTTTGGGAATGTAGTAAGCATTGTGTTGTT  398

seq1  CTAGTGTAAGAACTTTGCAATTTTAGATCAACAGTCTAAGTGCATCTACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTAAGAACTTTGCAATTTTAGATCAACAGTCTAAGTGCATCTACT  448

seq1  GCAGATGTATCTTGGAATAACCTCTAATTTGAAAAGGAATAGATATGAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTATCTTGGAATAACCTCTAATTTGAAAAGGAATAGATATGAAG  498

seq1  AAGTAGCTGGGATCAGTAGATCCTGGTGATACAGCGTCACTAGATCATCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTGGGATCAGTAGATCCTGGTGATACAGCGTCACTAGATCATCT  548

seq1  AGTGGTCCTGGGAGGCTCACACACAAGATATATATATTCAGGTGTCAGGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCCTGGGAGGCTCACACACAAGATATATATATTCAGGTGTCAGGC  598

seq1  TTGTGTAGCAAGCACCTTTGTTCAATGAGCCACCTTGTCCTTGTATATCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAGCAAGCACCTTTGTTCAATGAGCCACCTTGTCCTTGTATATCA  648

seq1  TATTAACATGCTACTTACCACCACCAAACAGTACTTACTTTGAATGAATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACATGCTACTTACCACCACCAAACAGTACTTACTTTGAATGAATA  698

seq1  TATATATATATATATATATATATATATATATATATATATATATTATATGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATTATATGG  748

seq1  TAAGAAAACACAGGAATTGGAATAGTAAAGTTTGATGCTGAATGGAGTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAACACAGGAATTGGAATAGTAAAGTTTGATGCTGAATGGAGTGT  798

seq1  GTGTGTGTGTGTTATGTCTGTGTGGAAACATGCATGCTATAGCATACATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTTATGTCTGTGTGGAAACATGCATGCTATAGCATACATG  848

seq1  TGGAGGTTAGAAGACACTTTTTGTGGAGTCAGTTATCTCTTTCCATTTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTTAGAAGACACTTTTTGTGGAGTCAGTTATCTCTTTCCATTTTT  898

seq1  ATGCAGGTTCCACAGACTGAATTC  918
      ||||||||||||||||||||||||
seq2  ATGCAGGTTCCACAGACTGAATTC  922

seq1: chr1_74834650_74835728
seq2: B6Ng01-111O18.g_70_1158

seq1  GAATTCAAGAGCAGGAAGCCCCAGTGGTAGGACTAAGGGGAAGCCTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGCAGGAAGCCCCAGTGGTAGGACTAAGGGGAAGCCTAGAG  50

seq1  ACCCACGGACAGCTTGGGTCAAGCCGATAGGGTTCAGGCTGTCTGAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACGGACAGCTTGGGTCAAGCCGATAGGGTTCAGGCTGTCTGAGACC  100

seq1  TCTAGGCTGTCCAGACATAGGACTGGGATGATCCTGGAAGGGTGTTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCTGTCCAGACATAGGACTGGGATGATCCTGGAAGGGTGTTCTGA  150

seq1  GGCGAGATGATGTTGAATCCTTTGCGAAGCCAGAAAAGCAGAGACCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGATGATGTTGAATCCTTTGCGAAGCCAGAAAAGCAGAGACCAGGG  200

seq1  CAAATGATAAAAACCGACATCACTCCAGGCAGTTCAAAAGGAAGGTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATAAAAACCGACATCACTCCAGGCAGTTCAAAAGGAAGGTAAAA  250

seq1  TGTAGTTTTGTTTTGATTTTTAAGCCTTGAGCAAGTCAGCTAAGCAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTTGTTTTGATTTTTAAGCCTTGAGCAAGTCAGCTAAGCAGCAA  300

seq1  ACCCGTTTGCCTCATTCGGTGATAGTACACTGCTGGCTACAGTCTTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTTTGCCTCATTCGGTGATAGTACACTGCTGGCTACAGTCTTGGCA  350

seq1  GGAGGTGTGTTAGAGAGAGGGTTTCTCTGTGTGGCCCTGAATGTACTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGTGTTAGAGAGAGGGTTTCTCTGTGTGGCCCTGAATGTACTGGA  400

seq1  ACTAGTTCTGTAGTTCTCAAACTCAGAGATCCGCCTGCCTCTGCTTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTCTGTAGTTCTCAAACTCAGAGATCCGCCTGCCTCTGCTTCCCT  450

seq1  GGTACAGTGATTAAAGGTGTGTGCCATCATGCCCACTCGCCATCGGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGTGATTAAAGGTGTGTGCCATCATGCCCACTCGCCATCGGCCTT  500

seq1  TAAATTGCTAGTCACACAGCAGTGATCCACCTTTTGCTACCAAGTCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGCTAGTCACACAGCAGTGATCCACCTTTTGCTACCAAGTCTGGG  550

seq1  TACTCCCTAACTTGAGGTGTGATAATCCTGAACAGGAGGCATGGCTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCTAACTTGAGGTGTGATAATCCTGAACAGGAGGCATGGCTGGAG  600

seq1  GTCACGAGCCTGTTCCTCTTTAAGCATGGAGATGGCTCTGTGCCCCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGAGCCTGTTCCTCTTTAAGCATGGAGATGGCTCTGTGCCCCTGCA  650

seq1  CTGCTGTCTAAGAATGAAGAGACGGTGCTCATCAGGGCCCACTGGCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCTAAGAATGAAGAGACGGTGCTCATCAGGGCCCACTGGCTTCC  700

seq1  CCTTCTCTAGCTTCCCAGATGCTCAGCCCCAGGCACAGGCAAGGTCCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTAGCTTCCCAGATGCTCAGCCCCAGGCACAGGCAAGGTCCCCT  750

seq1  GCTGGCTGAGGGGCGAGGGACATGTGGAAC-TTGAGCAAAGGGGAAGAAG  799
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  GCTGGCTGAGGGGCGAGGGACATGTGGAACTTTGAGC-AAGGGGAAGAAG  799

seq1  ACAGAGGCACCCCAGATGTGTG-TGTGTGTTTGCATCAGGAAAAGGCAGA  848
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  ACAGAGGCACCCCAGATGTGTGTTGTGTGTTTGCATCAGG-AAAGGCAGA  848

seq1  A-CACAGGCAGA-TAGAT-GGATTAGGAGGCTGAGTGGAGCACCTAGGAT  895
      | |||||||||| ||||| ||||||||| ||||||| |||||||||||||
seq2  ACCACAGGCAGATTAGATGGGATTAGGA-GCTGAGTTGAGCACCTAGGAT  897

seq1  GAGTCTGA-GGCCACGTG-CTCCCAGCTCATCTCCCTTTACCTTTGATAG  943
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  GAGTCTGAGGGCCACGTGCCTCCCAGCTCATCTCCCTTTACCTTTGATAG  947

seq1  CCACGCCTTAGGGATCTGGGGACACGGAAGCAGTGAGCTATTTCTCCTTA  993
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  CCACGCCTAAGGGATCTGGGGACACGGAAGCTGTGAGCTATTTCTCCTTA  997

seq1  CCTTGCTGAGGAAGGGACA--CCAGAG-AGGA-GGGTCCCTTGTCCATCT  1039
      ||| |||||||||||||||  |||||| |||| |||||||||||| ||||
seq2  CCTGGCTGAGGAAGGGACACCCCAGAGAAGGAGGGGTCCCTTGTCAATCT  1047

seq1  -AGAGCA-TCTCCCC-TTTTTCTTCACCAAGACCAACTTCTTT  1079
       |||||| ||||||| |||||||||| |||||||| |||||||
seq2  AAGAGCATTCTCCCCTTTTTTCTTCA-CAAGACCATCTTCTTT  1089