BAC Information

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BAC

Clone NameB6Ng01-111O19
Chromosome4 (Build37)1 (Build37)
Map Location 109,940,175 - 109,941,353175,887,146 - 175,887,353
singlet/doubletsingletsinglet
Overlap geneElavl4
Upstream geneEps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111O19.bB6Ng01-111O19.g
ACCDH918132DH918133
length1,164877
definitionDH918132|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O19, 5' end.DH918133|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,940,175 - 109,941,353)(175,887,146 - 175,887,353)
sequence
gaattcatcaaattacactcatgtgcattactgccttgctgatctttaga
gatggactcagcctgcagtgcggagggcaaacggaaagcaaagccacatg
tcctttctcagatgcagagctggggtcggatgtccgatcaccgactccaa
ctttcttctttatccactacatgtcccatacaccttggaaagcacattcc
aggtgacagccttcagcaccctttgggagctggctatgagaaacaggcac
actgtttgctctgcactgcgctgttcaagcatctctcttggtctgagaag
atctagcctccctgccactatgcttgacaccccgtcccctgtgctctctt
cacagctcaaacctgcatcccttatacacactccattctggacatttacc
acgcccctgtcttcctttacaaatggaatgtgagctcctcggtggtggtt
gatgccattgacttatttgcaaccccagagactagtgaggatccagtgga
gattctaggctctgttggtggcatttgtggataagtgaatggcttgttag
gttcttatctgcttcccacagccaaagctgctcttcttgctcttctccgt
cactctgctctgccgtaaacctctcccttatctgtcctctttaggatcaa
tttaaagataggagcacttcatcctttaaaatatactctggcctttgctg
ttgttgtgctgagtaactgctttcaaatgaacccaaaagaacgcattata
agtctgtgggcctttcactccctgggttaggccatttaactcatccatgc
attccttctaccgttggtcttctctgtctcagtcccaaactcctcacagt
ttaaggaattcatttccattcttgggttggaatttggtggcagtctttag
taccttctggaagttaagagaccatgaaacatttccactcataagaggta
ctgttttgctgttttcatcatggtattgatatctaagtgactagaactct
catctctgctagtctcccaaaggctgatctgcagtcatgttttatcatat
tgcttgagagttttacaagtcatgcaattcaagaaaagccgttggggagc
tcttaccatttactgcacagccataagattgggacatccctaagactgct
attctctttaagta
gaattcctaagaacttggtgcaggcctgtgggttgcccaatggcatcttc
tcctacatatatgtgtatgcaactaataaattgatttcactatcctctgt
catttcaggtatcatatattagcccattcaagacatgagagcatgaatct
atacttgaccagtaaagaaaataagagggaattaaaacaatatttttctt
cttaaagtagaaagaaaggagtgccttccaattgttcatacaatccagtg
gagtaaggtaaagaaaaatgaaacagaactttaacagatttaaaatgata
caacaaaatgtatatatttgcataaggcataattgtctgcctagtaaaac
cctaagaaataggtaaaagcttggctgtcattagagtgctatgagaagtg
ataatctatgaataaatgacaaagtttttaagattacataatgcaaagta
aattgcttttactatgtttaagtatggccttgaattcctgatctttccaa
gacttttatcatgaaggggtgttggattttgtcaaatgctttctaagcat
ctaatgaaatgatcatgtgtcttttttttctttgagtttgtttatatagt
ggattatgttgaaggattttcgtatattgaatcatccctgcatccctggc
atgaagcctacttgatcatgatggatgatcattttgatgtgttcttggat
tcggtttgtgagaattttattgagtatttttgcattgatattcacaaggg
aaattggtctgaagttctctttcttttgttgggcctttgtgtgatttagt
tatctgagtaactgtggcttcatagagtgaattgtgtagtgttccttctg
tttttctattttgtagaataatttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_109940175_109941353
seq2: B6Ng01-111O19.b_49_1212

seq1  GAATTCATCAAATTACACTCATGTGCATTACTGCCTTGCTGATCTTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAAATTACACTCATGTGCATTACTGCCTTGCTGATCTTTAGA  50

seq1  GATGGACTCAGCCTGCAGTGCGGAGGGCAAACGGAAAGCAAAGCCACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACTCAGCCTGCAGTGCGGAGGGCAAACGGAAAGCAAAGCCACATG  100

seq1  TCCTTTCTCAGATGCAGAGCTGGGGTCGGATGTCCGATCACCGACTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTCAGATGCAGAGCTGGGGTCGGATGTCCGATCACCGACTCCAA  150

seq1  CTTTCTTCTTTATCCACTACATGTCCCATACACCTTGGAAAGCACATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTTATCCACTACATGTCCCATACACCTTGGAAAGCACATTCC  200

seq1  AGGTGACAGCCTTCAGCACCCTTTGGGAGCTGGCTATGAGAAACAGGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACAGCCTTCAGCACCCTTTGGGAGCTGGCTATGAGAAACAGGCAC  250

seq1  ACTGTTTGCTCTGCACTGCGCTGTTCAAGCATCTCTCTTGGTCTGAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGCTCTGCACTGCGCTGTTCAAGCATCTCTCTTGGTCTGAGAAG  300

seq1  ATCTAGCCTCCCTGCCACTATGCTTGACACCCCGTCCCCTGTGCTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCCTCCCTGCCACTATGCTTGACACCCCGTCCCCTGTGCTCTCTT  350

seq1  CACAGCTCAAACCTGCATCCCTTATACACACTCCATTCTGGACATTTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCAAACCTGCATCCCTTATACACACTCCATTCTGGACATTTACC  400

seq1  ACGCCCCTGTCTTCCTTTACAAATGGAATGTGAGCTCCTCGGTGGTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCCTGTCTTCCTTTACAAATGGAATGTGAGCTCCTCGGTGGTGGTT  450

seq1  GATGCCATTGACTTATTTGCAACCCCAGAGACTAGTGAGGATCCAGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCATTGACTTATTTGCAACCCCAGAGACTAGTGAGGATCCAGTGGA  500

seq1  GATTCTAGGCTCTGTTGGTGGCATTTGTGGATAAGTGAATGGCTTGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAGGCTCTGTTGGTGGCATTTGTGGATAAGTGAATGGCTTGTTAG  550

seq1  GTTCTTATCTGCTTCCCACAGCCAAAGCTGCTCTTCTTGCTCTTCTCCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTATCTGCTTCCCACAGCCAAAGCTGCTCTTCTTGCTCTTCTCCGT  600

seq1  CACTCTGCTCTGCCGTAAACCTCTCCCTTATCTGTCCTCTTTAGGATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGCTCTGCCGTAAACCTCTCCCTTATCTGTCCTCTTTAGGATCAA  650

seq1  TTTAAAGATAGGAGCACTTCATCCTTTAAAATATACTCTGGCCTTTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGATAGGAGCACTTCATCCTTTAAAATATACTCTGGCCTTTGCTG  700

seq1  TTGTTGTGCTGAGTAACTGCTTTCAAATGAACCCAAAAGAACGCATTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGCTGAGTAACTGCTTTCAAATGAACCCAAAAGAACGCATTATA  750

seq1  AGTCTGTGGGCCTTTCACTCCCTGGGTTAGGCCATTTAACTCATCCATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGGGCCTTTCACTCCCTGGGTTAGGCCATTTAACTCATCCATGC  800

seq1  ATTCCTTCTACCGTTGGTCTTCTCTGTCTCAGTCCCAAACTCCTCACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCTACCGTTGGTCTTCTCTGTCTCAGTCCCAAACTCCTCACAGT  850

seq1  TTAAGGAATTCATTTCCATTCTT-GGTTGGAATTTGGTGGCAGTCTTTAG  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTAAGGAATTCATTTCCATTCTTGGGTTGGAATTTGGTGGCAGTCTTTAG  900

seq1  TACCTTCTGGAAGTTAAGAGACCATGAAACATTTCCACTCATAAGAGGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCTGGAAGTTAAGAGACCATGAAACATTTCCACTCATAAGAGGTA  950

seq1  CTGTTTTTGCTGTTTTTCATCATGGTATTGATATTCTAAGTTGACTTAGA  999
      ||| |||||||| |||||||||||||||||||| |||||| |||| ||||
seq2  CTG-TTTTGCTG-TTTTCATCATGGTATTGATA-TCTAAG-TGAC-TAGA  995

seq1  ACTCTTCATCCTCCTGCCTTAGTCTCCCAAAGGGCTGATCTTGCAGTCAT  1049
      |||| |||||   ||||  |||||||||||| |||||||| |||||||||
seq2  ACTC-TCATC--TCTGC--TAGTCTCCCAAA-GGCTGATC-TGCAGTCAT  1038

seq1  GTTTTATCATATTTGCTTTGAGAGTTTTTACAAGTCATGCAAATCAAAGA  1099
      ||||||||||| |||| ||||||| ||||||||||||||||| ||||   
seq2  GTTTTATCATA-TTGC-TTGAGAG-TTTTACAAGTCATGCAATTCAA--G  1083

seq1  AAAAGCCAGT-GGGAGCTCTTACCATTTTACTGCACAGCCATTAGATCTG  1148
      |||||||  | |||||||||||||| |||||||||||||||| ||||  |
seq2  AAAAGCCGTTGGGGAGCTCTTACCA-TTTACTGCACAGCCATAAGATTGG  1132

seq1  AGCATGCCT-AGA-TGCTATTTCTTTTTAAGTA  1179
        ||| ||| ||| ||||| |||| ||||||||
seq2  GACATCCCTAAGACTGCTA-TTCTCTTTAAGTA  1164

seq1: chr1_175887146_175887353
seq2: B6Ng01-111O19.g_520_728 (reverse)

seq1  TAGGTTTCATCCCAGGGATGCAGGGATGGTTCAATATACGGAAATCCATC  50
      |||| ||||| ||||||||||||||||| ||||||||||| |||||| ||
seq2  TAGGCTTCATGCCAGGGATGCAGGGATGATTCAATATACGAAAATCCTTC  50

seq1  AACGTAACCCAGTATATAAACAAACTCAAAGACAAAAA--CCACATGATC  98
      ||| ||| ||| |||||||||||||||||||| |||||   |||||||||
seq2  AACATAATCCACTATATAAACAAACTCAAAGAAAAAAAAGACACATGATC  100

seq1  ATCTCATTAGATGCTGAGAAAGCATTTGACAAAATCCAACACCCATTCAT  148
      || |||||||||||| |||||||||||||||||||||||||||| |||||
seq2  ATTTCATTAGATGCTTAGAAAGCATTTGACAAAATCCAACACCCCTTCAT  150

seq1  GATAAAAGTCTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGA  198
      ||||||||||||||||||||||||||||||||| |||||| |||||||  
seq2  GATAAAAGTCTTGGAAAGATCAGGAATTCAAGG-CCATACTTAAACATAG  199

seq1  TAAAAGCAAT  208
      ||||||||||
seq2  TAAAAGCAAT  209