BAC Information

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BAC

Clone NameB6Ng01-111P13
Chromosome1 (Build37)16 (Build37)
Map Location 19,449,730 - 19,449,87846,291,642 - 46,292,711
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111P13.bB6Ng01-111P13.g
ACCDH918165DH918166
length9991,065
definitionDH918165|Mus musculus domesticus DNA, BAC clone: B6Ng01-111P13, 5' end.DH918166|Mus musculus domesticus DNA, BAC clone: B6Ng01-111P13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,449,730 - 19,449,878)(46,291,642 - 46,292,711)
sequence
gaattctgtttagatcttaccccatttttcattgaattgtttgtggtttt
gatacctagtttcttttttttttcttttcaattttttattagatattgtc
ttcatttacatttcaaatgctatcctgaaagtcccctataccctccgtcc
accctgctcccctacccaccctctcccacttctttgatacctagtttctt
gagttttatatatattttgcatattagtcctgtaccagatatggacttgg
taaatatatttttccattctgtagactgatgctttgattgatgatgtcct
ttgccttacaggagcttttcagttttatgagaacccattaattaatttta
ttcttggtgcccctgttttctgtgttctgttcagaaagttgactcctgtg
ctaatgtgttcaagactattcctcaccttctcttctgtcaggttcagtgt
atctggttttatgttgagatctttgatcgattggacttgaattttgttca
tggtgataaatattgatgtatttgcaatcttctacatgcagatatccagt
tagaccagcaccatttgttgaagatgttttttatttccagtgtgtgtttc
tggcttctttgtcaaaagtcaggtgtcaatatgtgtttaaatttatgcct
tggtcttcaatttcattcccttgtttgacatgtctatatttatgccaata
tcatgcaacctttattactatagctctgtagtacaacttgaaatcaggga
tagtgatacttccagcagttattgttgttgttttattgttcaggattgtt
ttatctactcttgttttttgttgttattgttgttccatatgaatttgtga
attgtccttttgagctctataaagaatggggttagaatttattatgggga
ttgcattgaatctgtagatagtttttagtagttgtgggtcatctgtacta
tgtaatcctatggatccatgggttatagagatctttcttctttgatatc
gaattctatctgtggagtagtagaggctgaatagggacacagctcaaaag
attaagaacaaatccctggacttgtagaaagccaacattagagagcaggc
taattccttgcagacactacaagagggaagggagggatttcagcagcaac
aacctaagtccttggtgaatgctggaaagacttctaaaatattatatctt
gtagcatcatgaaagcagaaatgtaagtcttaattttgaaaagaaatgac
ttatgaggtgttcaaatgctttcctatatgtggtttcttctcttcaataa
tagttgactacttgaaagataaaacccaaagttgttcacaaaaacaagag
agtttccatttaaagatgttttggtaatcttccttagttctgaggtttgg
ggctttctgaaatcccttcatttcattttgcaatggattattaaagactc
cttctccaaataactgagttgaaaacaaaccataaaaactatttaaggtc
tggaggggtaacagagttaaatgagaatgcatttgtattcagtaaacgtg
cattaggttctagaatccttgagtccaggggaagtcctgttaggtgtgcc
attaagttttctttctccttcccacttccctattctgctgcattgatcac
aggccatattatgatcctttaaacatgataggtgaggtaaccataggcaa
gttgatcattagtgtcttccgcatctttcccttcttttgacagtgacata
aaatgtataagatctccatttcaaaaattttatttgcattatcctttaaa
gaatctcaagcgatgaagttgttctaactgttgagttgatagctaattat
gaacagggttaattatatttagccagcgtgaacgattgtttagaggaggt
gaccttctgttgcctcttggaaactgcagctcagacccagccagctgctg
tggtgcatgaaaaacatcttagttcattaagatcaaaggagctagtcact
tgttcgcagactgatttcgccagctgcagaggatttaaagcatttacact
ttaaaggtcctctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_19449730_19449878
seq2: B6Ng01-111P13.b_107_222 (reverse)

seq1  GTGGGAGTGGGTGGGTAGGGGAGCACCCTTATAGAGGCAGGGGGCAGGGG  50
      ||||||| |||||||||||||||||                |||  |  |
seq2  GTGGGAGAGGGTGGGTAGGGGAGCA----------------GGGTGGACG  34

seq1  GATAGAATAAGGAAGTTTCAGAGGGGAGACCTGGAAAGGAGATACCATTT  100
      ||  | ||| || | ||||||                   |||| |||||
seq2  GAGGGTATAGGGGACTTTCAG-------------------GATAGCATTT  65

seq1  GACCT---------GAAAATATCTAATAAAAGGAAAAAAAGAAAAAAGAA  141
      ||  |         || ||||||||||       ||||||   |||||||
seq2  GAAATGTAAATGAAGACAATATCTAAT-------AAAAAATTGAAAAGAA  108

seq1  AAAAAAAA  149
      ||||||||
seq2  AAAAAAAA  116

seq1: chr16_46291642_46292711
seq2: B6Ng01-111P13.g_69_1133 (reverse)

seq1  GCAGAGGACCTTTAAAAGTTGTTAATTGCTGTAAATCCTTCTGCAGCT-G  49
      ||||||||||||| |||||   ||| |||| ||||||| ||||||||| |
seq2  GCAGAGGACCTTT-AAAGT--GTAAATGCTTTAAATCC-TCTGCAGCTGG  46

seq1  CGAAATCAGTCCTGCGAACAAGTGACTAGCTCCTTTGATCTTAATGAACT  99
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CGAAATCAGT-CTGCGAACAAGTGACTAGCTCCTTTGATCTTAATGAACT  95

seq1  AAGATGTTTTTCATGCACCACAGCAGCTGGCTGGGTCCTGAGCTGCAGTT  149
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGATGTTTTTCATGCACCACAGCAGCTGGCTGGGT-CTGAGCTGCAGTT  144

seq1  TCCAAGAG--CACAG-AGGTCACCTCCTTCTAAACAATCGTTCACGCTGG  196
      ||||||||   |||| ||||||||||| ||||||||||||||||||||||
seq2  TCCAAGAGGCAACAGAAGGTCACCTCC-TCTAAACAATCGTTCACGCTGG  193

seq1  CTAAATTATAATT-ACCCTGTTCATAATTAGCTATCAACTCAACAGTTAG  245
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTAAA-TATAATTAACCCTGTTCATAATTAGCTATCAACTCAACAGTTAG  242

seq1  AACAACTTCATCGCTTGAGATTCTTTTAAAGGATAATGCAAATAAAATTT  295
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACAACTTCATCGCTTGAGATTC-TTTAAAGGATAATGCAAATAAAATTT  291

seq1  TTTGAATGGAGATCTTATACATTTTTATGTCACTGTCAAAAGAAGGGAAA  345
      ||  ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGAAATGGAGATCTTATACA-TTTTATGTCACTGTCAAAAGAAGGGAAA  340

seq1  GATGCGGAAGACACTAATGATCAACTTGCCTATGGTTACCTCACCTATCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCGGAAGACACTAATGATCAACTTGCCTATGGTTACCTCACCTATCA  390

seq1  TGTTTAAAGGATCATAATATGGCCTGTGATCAATGCAGCAGAATAGGGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAGGATCATAATATGGCCTGTGATCAATGCAGCAGAATAGGGAA  440

seq1  GTGGGAAGGAGAAAGAAAACTTAATGGCACACCTAACAGGACTTCCCCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGGAGAAAGAAAACTTAATGGCACACCTAACAGGACTTCCCCTG  490

seq1  GACTCAAGGATTCTAGAACCTAATGCACGTTTACTGAATACAAATGCATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAGGATTCTAGAACCTAATGCACGTTTACTGAATACAAATGCATT  540

seq1  CTCATTTAACTCTGTTACCCCTCCAGACCTTAAATAGTTTTTATGGTTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTAACTCTGTTACCCCTCCAGACCTTAAATAGTTTTTATGGTTTG  590

seq1  TTTTCAACTCAGTTATTTGGAGAAGGAGTCTTTAATAATCCATTGCAAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACTCAGTTATTTGGAGAAGGAGTCTTTAATAATCCATTGCAAAA  640

seq1  TGAAATGAAGGGATTTCAGAAAGCCCCAAACCTCAGAACTAAGGAAGATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAAGGGATTTCAGAAAGCCCCAAACCTCAGAACTAAGGAAGATT  690

seq1  ACCAAAACATCTTTAAATGGAAACTCTCTTGTTTTTGTGAACAACTTTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAACATCTTTAAATGGAAACTCTCTTGTTTTTGTGAACAACTTTGG  740

seq1  GTTTTATCTTTCAAGTAGTCAACTATTATTGAAGAGAAGAAACCACATAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATCTTTCAAGTAGTCAACTATTATTGAAGAGAAGAAACCACATAT  790

seq1  AGGAAAGCATTTGAACACCTCATAAGTCATTTCTTTTCAAAATTAAGACT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCATTTGAACACCTCATAAGTCATTTCTTTTCAAAATTAAGACT  840

seq1  TACATTTCTGCTTTCATGATGCTACAAGATATAATATTTTAGAAGTCTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCTGCTTTCATGATGCTACAAGATATAATATTTTAGAAGTCTTT  890

seq1  CCAGCATTCACCAAGGACTTAGGTTGTTGCTGCTGAAATCCCTCCCTTCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTCACCAAGGACTTAGGTTGTTGCTGCTGAAATCCCTCCCTTCC  940

seq1  CTCTTGTAGTGTCTGCAAGGAATTAGCCTGCTCTCTAATGTTGGCTTTCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTAGTGTCTGCAAGGAATTAGCCTGCTCTCTAATGTTGGCTTTCT  990

seq1  ACAAGTCCAGGGATTTGTTCTTAATCTTTTGAGCTGTGTCCCTATTCAGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCCAGGGATTTGTTCTTAATCTTTTGAGCTGTGTCCCTATTCAGC  1040

seq1  CTCTACTACTCCACAGATAGAATTC  1070
      |||||||||||||||||||||||||
seq2  CTCTACTACTCCACAGATAGAATTC  1065