BAC Information

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BAC

Clone NameB6Ng01-112E11
Chromosome6 (Build37)1 (Build37)
Map Location 18,835,659 - 18,836,19244,673,240 - 44,674,237
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112E11.bB6Ng01-112E11.g
ACCDH918383DH918384
length964997
definitionDH918383|Mus musculus domesticus DNA, BAC clone: B6Ng01-112E11, 5' end.DH918384|Mus musculus domesticus DNA, BAC clone: B6Ng01-112E11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,659 - 18,836,192)(44,673,240 - 44,674,237)
sequence
gaattccagagtggttgtacaagcttgcaatcccaccaacagtggaggag
tgttcctctttctccacatcctcgccagcatctgctgtcccctgaatttt
tgatcttagccattctgactggtgggagatggaatctcagggttgttttg
atttgcatttccctgatgattaaggatgctgaacatttttttcaggtgtt
tctcagccattcggtattcctcaggtgagaattctttgtttagctctgag
ccccatttttaatggggttatttgattttctggagtccaccttcttgagt
tctttatatatatattggatattagtcccctatctgatttaggataggta
aagatcctttcccaatctgttggtggcctttttgtctaattgactgtgtc
ttttgccttacagaagcgttgcagtttcatgaggtcccatttgtcaattc
tcgaatttacagcacaagccattgctgttctattcaggaatttttcccct
gtgcccatatcttcgaaacttttccccactttctcctctataagtttcag
tgtctctggttttatgtggagctccttgatccacttagatttgaccttag
tacaaggagataggaatggatcaattcgcattcttctacttgttagctac
cagttgtgccagcaccatttgttgaaaatgctgtcttgaatggataaaaa
aaaaatgtggtacatttacacaatggagtactactcagctattgaaaaga
atgaatctatgaaattcctaggcaaatggttggacctggagggcatcatc
ctgagtgagataacacaatcacaaaagactcaaagatatgtactctctga
taagtggatattagcccagaaacttattatagtgagatataagatataat
ttgcaaacacaagaaactgaagaagacgaagacaagtgggatactctgcc
cttcttaaatggaa
gaattctaagtcttatataatttactttagcctcaattcatggatgcatc
gagtagtggaaagccctttggcagtaagtactgcctttattgacttccta
agagaaagaatgatataattattagtgttgatggggatgatggcagcttt
gctccttggatggattcttggtgtgcacaatgtttgactcttgtgtcctt
gatcgtacttgttgttgagagagatgctggaggagggataaagtacaaat
tatttggctgatagttttagaaagacaataagacttgaaatgctcatttc
gatgcagaacaattaacaaaatactaccttctaaagctgttattgtgcaa
gcttatgttttattttattatcatattttaaaaataaatagcccaaattg
cagtcatagctttaatttataataaatagtttaattttcagtcatcattt
atactatcatggactttatcacctcttacggtgacataaatggtaaagct
taattatttctcttaataaatgatcaatgtaaaaatctcgttggcttttt
caagtgtcactgactatataatattgaccatgaataattaaatggttagt
gtttcagtcaacatttaaaatcttttctttgtaactctcttgaggcatct
ttatttgtatgaattgtttattcagcactacccaagacatctttgcatct
agttatcttcaaggtacaattgcacctctgaccttagattatttaaataa
gagtctctggtcactagaagacacattagcttgataggctagggtgtaga
aaaatgacttaagcaaccactctaggactggcatgactctctggcttgtg
ctatagaagagagattgatgtagatggaatgggaaggtgatgaaagaaat
aggtaccataagtctgtcctgaaatggactacagtgtttaattgtatgca
gcaataataagagctttgtgataataacatgatgccaatatggttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835659_18836192
seq2: B6Ng01-112E11.b_49_585 (reverse)

seq1  TAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAGGGGAAAAG  50
      ||||||||||||||||||||||  | ||||||||||||| ||||||||| 
seq2  TAGAGGAGAAAGTGGGGAAAAGTTTCGAAGATATGGGCACAGGGGAAAAA  50

seq1  TTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAGAGAATCGACAA  99
      |||||||| |||||||||||||| |||||||| |  | |||||| |||||
seq2  TTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAATTCGAGAATTGACAA  100

seq1  ATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCA  149
      ||||||||| |||||||| ||| | ||||| |||||||||||||| ||||
seq2  ATGGGACCTCATGAAACTGCAACGCTTCTGTAAGGCAAAAGACACAGTCA  150

seq1  ATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCT  199
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCT  200

seq1  AAATCAGATAGGGGACTAATATCCA--ACATATATAAAGAACTCAAGAAG  247
      |||||||||||||||||||||||||  | |||||||||||||||||||||
seq2  AAATCAGATAGGGGACTAATATCCAATATATATATAAAGAACTCAAGAAG  250

seq1  GTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGGCTCAGAACT  297
      ||||||| |||||||||||||||||||||||| |||||||||||||| ||
seq2  GTGGACTCCAGAAAATCAAATAACCCCATTAA-AAATGGGGCTCAGAGCT  299

seq1  GAACAAAGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTG-  346
       ||||||||||||||||||||||||||||||||||| ||||| |||||| 
seq2  AAACAAAGAATTCTCACCTGAGGAATACCGAATGGCTGAGAAACACCTGA  349

seq1  AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGGAAATCAAAACAAC  396
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  AAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC  399

seq1  CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG  446
      |||||||||||| ||| |||||||||||||||||||||||||||||||||
seq2  CCTGAGATTCCATCTCCCACCAGTCAGAATGGCTAAGATCAAAAATTCAG  449

seq1  GTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCAT  496
      | ||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  GGGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCAC  499

seq1  TGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA  534
      |||||||||||||||| |||||||||||||||||||||
seq2  TGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA  537

seq1: chr1_44673240_44674237
seq2: B6Ng01-112E11.g_68_1064

seq1  GAATTCTAAGTCTTATATAATTTACTTTAGCCTCAATTCATGGATGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTCTTATATAATTTACTTTAGCCTCAATTCATGGATGCATC  50

seq1  GAGTAGTGGAAAGCCCTTTGGCAGTAAGTACTGCCTTTATTGACTTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTGGAAAGCCCTTTGGCAGTAAGTACTGCCTTTATTGACTTCCTA  100

seq1  AGAGAAAGAATGATATAATTATTAGTGTTGATGGGGATGATGGCAGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAATGATATAATTATTAGTGTTGATGGGGATGATGGCAGCTTT  150

seq1  GCTCCTTGGATGGATTCTTGGTGTGCACAATGTTTGACTCTTGTGTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTGGATGGATTCTTGGTGTGCACAATGTTTGACTCTTGTGTCCTT  200

seq1  GATCGTACTTGTTGTTGAGAGAGATGCTGGAGGAGGGATAAAGTACAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGTACTTGTTGTTGAGAGAGATGCTGGAGGAGGGATAAAGTACAAAT  250

seq1  TATTTGGCTGATAGTTTTAGAAAGACAATAAGACTTGAAATGCTCATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGCTGATAGTTTTAGAAAGACAATAAGACTTGAAATGCTCATTTC  300

seq1  GATGCAGAACAATTAACAAAATACTACCTTCTAAAGCTGTTATTGTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAACAATTAACAAAATACTACCTTCTAAAGCTGTTATTGTGCAA  350

seq1  GCTTATGTTTTATTTTATTATCATATTTTAAAAATAAATAGCCCAAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGTTTTATTTTATTATCATATTTTAAAAATAAATAGCCCAAATTG  400

seq1  CAGTCATAGCTTTAATTTATAATAAATAGTTTAATTTTCAGTCATCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATAGCTTTAATTTATAATAAATAGTTTAATTTTCAGTCATCATTT  450

seq1  ATACTATCATGGACTTTATCACCTCTTACGGTGACATAAATGGTAAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATCATGGACTTTATCACCTCTTACGGTGACATAAATGGTAAAGCT  500

seq1  TAATTATTTCTCTTAATAAATGATCAATGTAAAAATCTCGTTGGCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTTCTCTTAATAAATGATCAATGTAAAAATCTCGTTGGCTTTTT  550

seq1  CAAGTGTCACTGACTATATAATATTGACCATGAATAATTAAATGGTTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTCACTGACTATATAATATTGACCATGAATAATTAAATGGTTAGT  600

seq1  GTTTCAGTCAACATTTAAAATCTTTTCTTTGTAACTCTCTTGAGGCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGTCAACATTTAAAATCTTTTCTTTGTAACTCTCTTGAGGCATCT  650

seq1  TTATTTGTATGAATTGTTTATTCAGCACTACCCAAGACATCTTTGCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTATGAATTGTTTATTCAGCACTACCCAAGACATCTTTGCATCT  700

seq1  AGTTATCTTCAAGGTACAATTGCACCTCTGACCTTAGATTATTTAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCTTCAAGGTACAATTGCACCTCTGACCTTAGATTATTTAAATAA  750

seq1  GAGTCTCTGGTCACTAGAAGACACATTAGCTTGATAGGCTAGGGTGTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCTGGTCACTAGAAGACACATTAGCTTGATAGGCTAGGGTGTAGA  800

seq1  AAAATGACTTAAGCAACCACTCTAGGACTGGCATGACTCTCTGGCTTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACTTAAGCAACCACTCTAGGACTGGCATGACTCTCTGGCTTGTG  850

seq1  CTATAGAAGAGAGATTGATGTAGATGGAATGGGAAGGTGATGAAAGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAAGAGAGATTGATGTAGATGGAATGGGAAGGTGATGAAAGAAAT  900

seq1  AGGTACCATAAGTCTGTCCTGAAATGGACTACAGGTGTTTAATTGTATGC  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGGTACCATAAGTCTGTCCTGAAATGGACTACA-GTGTTTAATTGTATGC  949

seq1  AGCAATTAGTAGAGCTTTGTGATATTAACATGATTGCCAATAT-GTTAT  998
      |||||| |  |||||||||||||| |||||||| ||||||||| |||||
seq2  AGCAATAATAAGAGCTTTGTGATAATAACATGA-TGCCAATATGGTTAT  997