BAC Information

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BAC

Clone NameB6Ng01-112G21
Chromosome1 (Build37)
Map Location 23,194,656 - 23,382,714
singlet/doubletdoublet
Overlap geneEG623356, Ogfrl1
Upstream geneLOC100040338, Rims1, Rims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4
Downstream geneLOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112G21.bB6Ng01-112G21.g
ACCDH918496DH918497
length1,072123
definitionDH918496|Mus musculus domesticus DNA, BAC clone: B6Ng01-112G21, 5' end.DH918497|Mus musculus domesticus DNA, BAC clone: B6Ng01-112G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,381,641 - 23,382,714)(23,194,656 - 23,194,778)
sequence
gaattcaaaaaaacaaaggaagcaatcagaagattcctcttggcttataa
aatgatgctagagttttttggaataaagctgattgataagactggaaatg
ttgctcgggccggaaactggcaagaaagatttcaacatcttaatgagtaa
gtgaagcctgagtggtaagccattggcctcttcctgtagctccattctct
ggaaagtagcaatagctcgccattggcataggtctgtctagctgttgggc
atggaaatagctagtcgttgggtgctggataggctagctattgggcatag
gactggacataggaacaactagcatttgaacacaggaatacatagctgtt
gggcattgaaatagctagtcatagggcacaggacaagctctaggtattgg
gcctagcaacttgacattgtccaattgtaaataatgaattgacattacca
gatattggacataggactggccagctgttgggcataggattagcttttct
ttttctttttctttttttgccataggactggctagtcattaggaatagga
atcaaaatctagtcagaaatgtgtttattccatctcgtgcattctaaaac
aaagcataggaatgagaatgaacaaattctacagagagctggctgctcta
ctccagagtggtctcttcttgaatcctctgcctccggcccaacgtggctt
ctctccttatatataccacatttcaaggagtttatagtttttcatatgtt
ccctctcctaggctataggagtacaaatcatttgtaatatcttcatgcgt
gcaagcttcttcggttaaattcataaatgcattctgtgatgtataaaaat
gggttcatttgatgtggccatacttctagctaaaatagaggaaaaagcac
atttgccttcatgagttaggtaaaggacaagtacctattttctgattaat
ttccaaaactattaaggaaatttagcagctttcctggatggagttggctg
actttttttgtttggattctttaatgatggataaaaacttataacccaag
tatgttgaaaaatattttctcc
tccacggaaggcgtcccttcttgtcctcttgtgggaaaacatcagagatc
tctaaggctacttcctcctgtcctcactgctgggtttgtgtttgatttgg
aggagggaagtgttgtggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_23381641_23382714
seq2: B6Ng01-112G21.b_44_1115 (reverse)

seq1  GGAGAAAATATTTTTAAAACTAAACTTTGGTTATAAGTATTAAT-CATCA  49
      ||||||||||||||| ||   | |||| |||||||||| || || |||||
seq2  GGAGAAAATATTTTTCAA--CATACTTGGGTTATAAGTTTTTATCCATCA  48

seq1  TTACAGATATCCAAACAAAAAAGTACAGCCAAACTCATCCAGGAAAGCTG  99
      ||| ||| ||||||||||||||   |||||||   |||||||||||||||
seq2  TTAAAGA-ATCCAAACAAAAAAAGTCAGCCAACTCCATCCAGGAAAGCTG  97

seq1  CTAAATTTTCCTTTATAGGTTTTGGAATTAATCAG-AAATAGGTACTTGT  148
      ||||| ||||||| |||| ||| | |||||||||| ||||||||||||||
seq2  CTAAA-TTTCCTTAATAGTTTTGGAAATTAATCAGAAAATAGGTACTTGT  146

seq1  CCTTTACCTAACTCATGAAGGCAAATGTGCTTTTTCCTCTATTTTAGCTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCTAACTCATGAAGGCAAATGTGCTTTTTCCTCTATTTTAGCTA  196

seq1  GAAGTATGGCCACATCAAATGAACCCATTTTTATACATCACAGAATGCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATGGCCACATCAAATGAACCCATTTTTATACATCACAGAATGCAT  246

seq1  TTATGAATTTAACCGAAGAAGCTTGCACGCATGAAGATATTACAAATGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATTTAACCGAAGAAGCTTGCACGCATGAAGATATTACAAATGAT  296

seq1  TTGTACTCCTATAGCCTAGGAGAGGGAACATATGAAAAACTATAAACTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTCCTATAGCCTAGGAGAGGGAACATATGAAAAACTATAAACTCC  346

seq1  TTGAAATGTGGTATATATAAGGAGAGAAGCCACGTTGGGCCGGAGGCAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGTGGTATATATAAGGAGAGAAGCCACGTTGGGCCGGAGGCAGA  396

seq1  GGATTCAAGAAGAGACCACTCTGGAGTAGAGCAGCCAGCTCTCTGTAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAAGAAGAGACCACTCTGGAGTAGAGCAGCCAGCTCTCTGTAGAA  446

seq1  TTTGTTCATTCTCATTCCTATGCTTTGTTTTAGAATGCACGAGATGGAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCATTCTCATTCCTATGCTTTGTTTTAGAATGCACGAGATGGAAT  496

seq1  AAACACATTTCTGACTAGATTTTGATTCCTATTCCTAATGACTAGCCAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTTCTGACTAGATTTTGATTCCTATTCCTAATGACTAGCCAGT  546

seq1  CCTATGGCAAAAAAAGAAAAAGAAAAAGAAAAGCTAATCCTATGCCCAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGCAAAAAAAGAAAAAGAAAAAGAAAAGCTAATCCTATGCCCAAC  596

seq1  AGCTGGCCAGTCCTATGTCCAATATCTGGTAATGTCAATTCATTATTTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCCAGTCCTATGTCCAATATCTGGTAATGTCAATTCATTATTTAC  646

seq1  AATTGGACAATGTCAAGTTGCTAGGCCCAATACCTAGAGCTTGTCCTGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGACAATGTCAAGTTGCTAGGCCCAATACCTAGAGCTTGTCCTGTG  696

seq1  CCCTATGACTAGCTATTTCAATGCCCAACAGCTATGTATTCCTGTGTTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGACTAGCTATTTCAATGCCCAACAGCTATGTATTCCTGTGTTCA  746

seq1  AATGCTAGTTGTTCCTATGTCCAGTCCTATGCCCAATAGCTAGCCTATCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAGTTGTTCCTATGTCCAGTCCTATGCCCAATAGCTAGCCTATCC  796

seq1  AGCACCCAACGACTAGCTATTTCCATGCCCAACAGCTAGACAGACCTATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCAACGACTAGCTATTTCCATGCCCAACAGCTAGACAGACCTATG  846

seq1  CCAATGGCGAGCTATTGCTACTTTCCAGAGAATGGAGCTACAGGAAGAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGCGAGCTATTGCTACTTTCCAGAGAATGGAGCTACAGGAAGAGG  896

seq1  CCAATGGCTTACCACTCAGGCTTCACTTACTCATTAAGATGTTGAAATCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGCTTACCACTCAGGCTTCACTTACTCATTAAGATGTTGAAATCT  946

seq1  TTCTTGCCAGTTTCCGGCCCGAGCAACATTTCCAGTCTTATCAATCAGCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCCAGTTTCCGGCCCGAGCAACATTTCCAGTCTTATCAATCAGCT  996

seq1  TTATTCCAAAAAACTCTAGCATCATTTTATAAGCCAAGAGGAATCTTCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCAAAAAACTCTAGCATCATTTTATAAGCCAAGAGGAATCTTCTG  1046

seq1  ATTGCTTCCTTTGTTTTTTTGAATTC  1074
      ||||||||||||||||||||||||||
seq2  ATTGCTTCCTTTGTTTTTTTGAATTC  1072

seq1: chr1_23194656_23194778
seq2: B6Ng01-112G21.g_73_195

seq1  TCCACGGAAGGCGTCCCTTCTTGTCCTCTTGTGGGAAAACATCAGAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGGAAGGCGTCCCTTCTTGTCCTCTTGTGGGAAAACATCAGAGATC  50

seq1  TCTAAGGCTACTTCCTCCTGTCCTCACTGCTGGGTTTGTGTTTGATTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGCTACTTCCTCCTGTCCTCACTGCTGGGTTTGTGTTTGATTTGG  100

seq1  AGGAGGGAAGTGTTGTGGGGGGG  123
      |||||||||||||||||||||||
seq2  AGGAGGGAAGTGTTGTGGGGGGG  123