BAC Information

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BAC

Clone NameB6Ng01-112I21
Chromosome1 (Build37)2 (Build37)
Map Location 64,087,146 - 64,088,212181,211,785 - 181,212,467
singlet/doubletsingletsinglet
Overlap geneKlf7
Upstream geneA430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918
Downstream genePpia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112I21.bB6Ng01-112I21.g
ACCDH918588DH918589
length1,0641,059
definitionDH918588|Mus musculus domesticus DNA, BAC clone: B6Ng01-112I21, 5' end.DH918589|Mus musculus domesticus DNA, BAC clone: B6Ng01-112I21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,087,146 - 64,088,212)(181,211,785 - 181,212,467)
sequence
gaattcctcagtgtgttgaaatggcaatttcttagtcagtcctcactctc
caaaacacataatgccacaatccctgagcctcaacacccttcagagatgg
gtgccttatggaggtacctccaaccaccacgctgtgacaactcacaggga
tctcatcttcatcccgggtgatacagtggacacatcttctgcacaggtct
gtgagcagtcaacaacctataggtttctttattagccaaggctgggaatg
actgaacccagggacatgggagatggaagctgaagagattgtcaaacaga
aacactgactgggacacgccgaggaagaaaagctgctgtcctttgcacat
tccagaggccttctagggaatgggatgaccatgggacaagggctatgttc
ctgggtagcagaagctgctcttcaggcagaagaagacaatagccgagaga
ggcacacttcctccagcctgggggagaggttatctctgcactccaggagc
caaagcctctttatttagttctcagaggatgaagataaaagaaaaatagc
ctcctcaggaagactgggggaaggaaagccaagactgtcctttatctgca
tcccaaaagaacaccaggccaacttggctgagcctggatttgagcatcct
cctactacactccaagaaagcaaactctcaagaggaaggcctggctggtg
ggagaggcaggtgtggagcacagggcctgggagaggcaggaagtgaggcc
gagctcatttccttccgaggacagcctggcctcctcctggacatcctgct
tcccccccttcccccttcgcccacctcccccgccatcctgctagctgctg
tccaagccgaggggaccctgaggctttcggggctttattgtattagaagc
atttttctcatcataaccaagacctttagtattgcattaaaagatggttt
aattttcttaaggctccctttgaacaaggaataaggattaggaaggataa
cttgcttcgatgcaaggccattattggttttatgtctagcgatcctgctt
caccttggcctgca
gaattcactaggcattaacacactgtgtttccatgggacgatggtttcta
cagggtggacaagaggtattgtgaatacagaatgcttctgcaatagtttt
agacgtggccagaaggaaatccaataaacaaccttccacatcccattgtg
tggagttgggaatgcccaaaggtctgtaactggtctgcagggctgagaaa
gtatgaggcacatgccattagcaaggctaaaagctgagggccgtgagcag
agggccagtgaaagctagatagttgcagggaaatctgaagttcaagccct
ggagagaccaaatcccgatcattactaaggtcagaatgcaaaggccacac
aggtgactttgggagtgagagaggtagaggttagcaacaaagatcaccta
ggatcttgtggcttctgttgtcagtgatggcatatatgtagtatgagaga
gtcaacctcaccatccccaaagcagtgacagagaactcagtgacagggtg
tactggctagttttgtgtcaacttgacacagctggggttatcacagagaa
aggagcttcagttgaggaaatgcctccatgagatccaactctaaggcatt
ttctcaattagtgatcaagggggaaaggccccttgtgggtgggaccatct
ctgggctggtagtcttgggttctataagagagcaggctgagcaagccagg
agaggcaagccagtaaagaacatccctccatggcctctgcatcagctcct
gctccctgacctgcttgagttccagtcctgacttcctttggtgatgaaca
acagtatggaagtgtaagctgaataaaccctttcctccccaacttgtttc
ttggtcatgatgtttgtgcaggaatagaaccctgactaagacaaattggt
accagagtggggtattcctgtgacacctgaccatgtttggggaggtctgt
ggaaggactttggactttggtcttgaagattcattcgttgttaaagctct
tgtgggatgttgtgtaggagcttgagaatagtttgagaacaggcaagatg
gagcctggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_64087146_64088212
seq2: B6Ng01-112I21.b_49_1112

seq1  GAATTCCTCAGTGTGTTGAAATGGCAATTTCTTAGTCAGTCCTCACTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGTGTGTTGAAATGGCAATTTCTTAGTCAGTCCTCACTCTC  50

seq1  CAAAACACATAATGCCACAATCCCTGAGCCTCAACACCCTTCAGAGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACATAATGCCACAATCCCTGAGCCTCAACACCCTTCAGAGATGG  100

seq1  GTGCCTTATGGAGGTACCTCCAACCACCACGCTGTGACAACTCACAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTATGGAGGTACCTCCAACCACCACGCTGTGACAACTCACAGGGA  150

seq1  TCTCATCTTCATCCCGGGTGATACAGTGGACACATCTTCTGCACAGGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTTCATCCCGGGTGATACAGTGGACACATCTTCTGCACAGGTCT  200

seq1  GTGAGCAGTCAACAACCTATAGGTTTCTTTATTAGCCAAGGCTGGGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAGTCAACAACCTATAGGTTTCTTTATTAGCCAAGGCTGGGAATG  250

seq1  ACTGAACCCAGGGACATGGGAGATGGAAGCTGAAGAGATTGTCAAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCCAGGGACATGGGAGATGGAAGCTGAAGAGATTGTCAAACAGA  300

seq1  AACACTGACTGGGACACGCCGAGGAAGAAAAGCTGCTGTCCTTTGCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGACTGGGACACGCCGAGGAAGAAAAGCTGCTGTCCTTTGCACAT  350

seq1  TCCAGAGGCCTTCTAGGGAATGGGATGACCATGGGACAAGGGCTATGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGCCTTCTAGGGAATGGGATGACCATGGGACAAGGGCTATGTTC  400

seq1  CTGGGTAGCAGAAGCTGCTCTTCAGGCAGAAGAAGACAATAGCCGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAGCAGAAGCTGCTCTTCAGGCAGAAGAAGACAATAGCCGAGAGA  450

seq1  GGCACACTTCCTCCAGCCTGGGGGAGAGGTTATCTCTGCACTCCAGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACTTCCTCCAGCCTGGGGGAGAGGTTATCTCTGCACTCCAGGAGC  500

seq1  CAAAGCCTCTTTATTTAGTTCTCAGAGGATGAAGATAAAAGAAAAATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCTCTTTATTTAGTTCTCAGAGGATGAAGATAAAAGAAAAATAGC  550

seq1  CTCCTCAGGAAGACTGGGGGAAGGAAAGCCAAGACTGTCCTTTATCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGGAAGACTGGGGGAAGGAAAGCCAAGACTGTCCTTTATCTGCA  600

seq1  TCCCAAAAGAACACCAGGCCAACTTGGCTGAGCCTGGATTTGAGCATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAAGAACACCAGGCCAACTTGGCTGAGCCTGGATTTGAGCATCCT  650

seq1  CCTACTACACTCCAAGAAAGCAAACTCTCAAGAGGAAGGCCTGGCTGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTACACTCCAAGAAAGCAAACTCTCAAGAGGAAGGCCTGGCTGGTG  700

seq1  GGAGAGGCAGGTGTGGAGCACAGGGCCTGGGAGAGGCAGGAAGTGAGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGCAGGTGTGGAGCACAGGGCCTGGGAGAGGCAGGAAGTGAGGCC  750

seq1  GAGCTCATTTCCTTCCGAGGACAGCCTGGCCTCCTCCTGGACATCCTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCATTTCCTTCCGAGGACAGCCTGGCCTCCTCCTGGACATCCTGCT  800

seq1  TCCCCCCCTTCCCCCTTCGCCCACCTCCCCCGCCATCCTGCTAGCTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCTTCCCCCTTCGCCCACCTCCCCCGCCATCCTGCTAGCTGCTG  850

seq1  TCCAAGCCGAGGGGACCCTGAGGCTTTCGGGGGCTTTATTGTATTAGAAG  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCAAGCCGAGGGGACCCTGAGGCTTTC-GGGGCTTTATTGTATTAGAAG  899

seq1  CATTTTTCTCATCATAACCAAGACCTTTAGTATTGCATTAAAAAGATGG-  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  CATTTTTCTCATCATAACCAAGACCTTTAGTATTGCATT-AAAAGATGGT  948

seq1  TTAATTTTCTTAAGCTTCCTTTTAAACACAGAAATAGGATTA-GAAGGAT  998
      ||||||||||||||  ||| ||| ||||  |||  ||||||| |||||||
seq2  TTAATTTTCTTAAGGCTCCCTTTGAACAAGGAATAAGGATTAGGAAGGAT  998

seq1  AACATGCTCAGATGCAAGCCCATTATTTG-ATTATGTCTAAACCTAATCC  1047
      ||| ||||  |||||||| |||||||| |  |||||||||      ||||
seq2  AACTTGCTTCGATGCAAGGCCATTATTGGTTTTATGTCTA---GCGATCC  1045

seq1  TGCCTTCACCTTGGCCTGCA  1067
      || |||||||||||||||||
seq2  TG-CTTCACCTTGGCCTGCA  1064

seq1: chr2_181211785_181212467
seq2: B6Ng01-112I21.g_665_1126 (reverse)

seq1  GCCAGACCTCCATCTTCTGCACTGTTCTCAACATTATCTTCCAAGCTCCT  50
      |||||  ||||||||  ||| ||||||||||  |  |||  |||||||||
seq2  GCCAG-GCTCCATCT--TGC-CTGTTCTCAAACTATTCT--CAAGCTCCT  44

seq1  ACACAACATTCCAC-AGAGCTCTTAACACCAAATGGATCTTCTGGCCCAA  99
      ||||||||| |||| |||||| |||||| | |||| ||||||  | ||||
seq2  ACACAACATCCCACAAGAGCT-TTAACAACGAATGAATCTTCAAGACCAA  93

seq1  AGTTCCAAAGTCCTTCCACAGTCTTCACCAAAACATGATCAGGCTGTCTC  149
      || |||||||||||||||||| | || || ||||||| ||||| |||| |
seq2  AG-TCCAAAGTCCTTCCACAGACCTC-CCCAAACATGGTCAGG-TGTCAC  140

seq1  AAGAATACCCCACTTCTGGTACCAATTTGTCTTAGTCAGGGTTTCTTTTT  199
      | ||||||||||| |||||||||||||||||||||||||||         
seq2  AGGAATACCCCAC-TCTGGTACCAATTTGTCTTAGTCAGGG---------  180

seq1  TTTAATATTTTTTTAGATTTATTTATTATTTATTATATGTAAGTACACTG  249
                                                        
seq2  --------------------------------------------------  180

seq1  TAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCATTATGGATG  299
                                                        
seq2  --------------------------------------------------  180

seq1  GTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTTGGAA  349
                                                        
seq2  --------------------------------------------------  180

seq1  GAGCAGTCGGGTGCTCTTACCTGCTGAGCCATCTCACCAGCCCTAGTCAG  399
                                                        
seq2  --------------------------------------------------  180

seq1  TGTTTCTATTCCTGGACAAAACATCATGACCAAGTAGCAAGTTGGGGAGG  449
         ||||||||||| || |||||||||||||||| | |||||||||||||
seq2  ---TTCTATTCCTGCAC-AAACATCATGACCAAGAAACAAGTTGGGGAGG  226

seq1  AAAGGGTTTATTCAGCTTACACTTCCATACTGCTGTTCATCACC-AAGGA  498
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  AAAGGGTTTATTCAGCTTACACTTCCATACTGTTGTTCATCACCAAAGGA  276

seq1  AGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGG  548
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGTCAGGACTGGAACTCAAGCAGGTCAGGGAGCAGGAGCTGATGCAGAGG  326

seq1  CCACGGAGGGATGTTTCTTACTGGCTTGCTTC-CCTGGCTTGCTCAGCCT  597
      ||| |||||||||||  |||||||||||| || |||||||||||||||||
seq2  CCATGGAGGGATGTTCTTTACTGGCTTGCCTCTCCTGGCTTGCTCAGCCT  376

seq1  GCTCTCTTATAGAACCCAAGACTGCCAGCCCAGAGATGGTCCTACCCACA  647
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  GCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATGGTCCCACCCACA  426

seq1  AGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAAT  683
      ||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAAT  462