BAC Information

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BAC

Clone NameB6Ng01-112K11
Chromosome1 (Build37)
Map Location 178,529,159 - 178,681,018
singlet/doubletdoublet
Overlap geneCep170
Upstream geneFh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
Downstream geneSdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112K11.bB6Ng01-112K11.g
ACCDH918661DH918662
length1,0061,111
definitionDH918661|Mus musculus domesticus DNA, BAC clone: B6Ng01-112K11, 5' end.DH918662|Mus musculus domesticus DNA, BAC clone: B6Ng01-112K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,680,003 - 178,681,018)(178,529,159 - 178,530,282)
sequence
gaattctctcttgtgccttaaatgtcagtgattgtgaggttttgtagtct
catgctttgtagagtttacaccattgtctagtttgaccatatgtttttgg
tgttaaagcagcaaagaattgtactgaagatgctttgttgtgttctttta
ccatgtaaagagactttttccaaccatagcataacaggatgttgaatgac
agaggtaatgttttttttttccgccataaaggcataatttctggacagga
attatgcacatatgtatgttgggaaaagagggttttcttcatctctgtgt
tcaaagtccatgtggcatgaggaagtcttttccctttttatttttgtctt
gttggtgtttttgctgtcatttaaaaagcatccatatctcgactcaaaaa
gtatgtgcaactgaaaacacccttgttaagcatttatgactagagcttgt
ttatcattagtgaactttttcatctgaatgtttattcgctacactatgaa
aaacacggtcttttgattgtttttaatcattgtttttaattcaccaatgt
ataatgtttcaatctttaaggaactgtagacttagaattttttgtgaggt
atgtgtgtcagttactgaaaattgtgctgtgtgtgaactctcgtggtgat
cttgtaatcatgatttttatttaaaaagtttaaatgataacataataact
ctttttttaataaattaaacaaatttagtaaaattcaagatggaggcgct
ttcctactgattatgcttccacctcagaagatgaatttggatcaaccgta
attcccctaaacatactcgtctacgtattctccagcctgaaaccactcgc
atgcagagtactggatcagccatgcctgctagtcttcattcagcacgaat
taaagaacaggaagatatatccgagattggactgcccatcagaagagaag
ccagtttggcctttattattttttatcacattgttgttaatgggggctgg
aagaga
gaattcttccccaaccaatttgcctacctttagttaggaggggggaaaat
gaaaaaaagaaaaaaaaagaaaaaacctaccaccttccttcacactaagt
tatagccttaataagagactctttctaaactactttgattttgcctataa
aataattattcctttttctgttcttagtgttgcatctatatgatcctagc
agtcttgcctctcagttaaactaacaagggtttcaactgacttcttattg
agatggttgggtaccacatcaaacccaaacaggctacgtgttggggaaag
gatcctgccagggtgatgcctgattggcactttcttgtcaaggacccagt
gctcccatgcagctgtaagggagtcccacccataggccagagtcagcctc
ctggtctaccacagcctggctttcagagctcaccacagccctgcctggga
ctaagctcaaatactgaccagccaggaccagatgctcccgacaagtctgg
ttctcttatttctctgagatgatgccttgggtggcactgtgaatgacaaa
gtttcctatacaagatgccctggtcctgttgaagagccaccgcctgctta
gctggtggtcactgctctcagcaggtatccctgctctggtttcagaatca
tttctcccatttccagggcccgtgagcctggatgctagtaccaatgtctg
ttttgttttgttttgtgcttggattctcttgattgactatttgtaattca
ttttagcttctagactatatttgtcaaaatttctcaagcaattccttcta
attatatttcttgggagtccccctcactatggaaatcgagtgcttagtta
actgacttttactattgcttttaaaaaaaacaatagaaagtattcaggca
tgaatttaattctgtttgtatctgtagtcatgactatagttttgatatct
cattattttctagaactctcagaatgaaacttactccttgtagtctaaaa
atttatttctaagactacaaatacaattacattttgtgtaaggctgtgaa
tctactttgacatttattttattcaattcatttttccaatatgtgactaa
ctattttattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_178680003_178681018
seq2: B6Ng01-112K11.b_43_1048 (reverse)

seq1  TCTC-TCCAGCCCCCAATAACCAGCAATGCTGATAAAAAATAAATAAAAG  49
      |||| ||||||||||| ||| || ||||| ||||||||||| |||||| |
seq2  TCTCTTCCAGCCCCCATTAA-CAACAATG-TGATAAAAAAT-AATAAAGG  47

seq1  CCAACCTGGCTATCTCTTCTCGATGGGCAGTCCAATCTCGGATATAATCT  99
      |||| |||||| |||||||| |||||||||||||||||||||||| ||||
seq2  CCAAACTGGCT-TCTCTTCT-GATGGGCAGTCCAATCTCGGATAT-ATCT  94

seq1  TCCTGTTCTTTAATTCGGTGCTTGAATGAAGAACTAGCAGGCATTGCTGA  149
      |||||||||||||||| |||| ||||||||| |||||||||||| |||||
seq2  TCCTGTTCTTTAATTC-GTGC-TGAATGAAG-ACTAGCAGGCATGGCTGA  141

seq1  TCCAGTACTCTGCATGCGAGTGGTTTTCAGGGCTGGAGAAGTACGTAGAC  199
      ||||||||||||||||||||||| ||||| |||||||||| |||||||||
seq2  TCCAGTACTCTGCATGCGAGTGG-TTTCA-GGCTGGAGAA-TACGTAGAC  188

seq1  GAGTATGTTTAGGGGAATTACGGTTTGATCCAAATTCATCTTCTGAGGTG  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAGTATGTTTAGGGGAATTACGG-TTGATCCAAATTCATCTTCTGAGGTG  237

seq1  GAAGCATAATCAGTAGGAAAGCGCCTCCATCTTGAA-TTTACTAAATTTG  298
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAAGCATAATCAGTAGGAAAGCGCCTCCATCTTGAATTTTACTAAATTTG  287

seq1  TTTAA-TTATTAAAAAAAGAGTTATTATGTTATCATTTAAACTTTTTAAA  347
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTATTAAAAAAAGAGTTATTATGTTATCATTTAAACTTTTTAAA  337

seq1  TAAAAATCATGATTACAAGATCACCACGAGAGTTCACACACAGCACAATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCATGATTACAAGATCACCACGAGAGTTCACACACAGCACAATT  387

seq1  TTCAGTAACTGACACACATACCTCACAAAAAATTCTAAGTCTACAGTTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAACTGACACACATACCTCACAAAAAATTCTAAGTCTACAGTTCC  437

seq1  TTAAAGATTGAAACATTATACATTGGTGAATTAAAAACAATGATTAAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTGAAACATTATACATTGGTGAATTAAAAACAATGATTAAAAA  487

seq1  CAATCAAAAGACCGTGTTTTTCATAGTGTAGCGAATAAACATTCAGATGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAAAGACCGTGTTTTTCATAGTGTAGCGAATAAACATTCAGATGA  537

seq1  AAAAGTTCACTAATGATAAACAAGCTCTAGTCATAAATGCTTAACAAGGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCACTAATGATAAACAAGCTCTAGTCATAAATGCTTAACAAGGG  587

seq1  TGTTTTCAGTTGCACATACTTTTTGAGTCGAGATATGGATGCTTTTTAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGTTGCACATACTTTTTGAGTCGAGATATGGATGCTTTTTAAA  637

seq1  TGACAGCAAAAACACCAACAAGACAAAAATAAAAAGGGAAAAGACTTCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCAAAAACACCAACAAGACAAAAATAAAAAGGGAAAAGACTTCCT  687

seq1  CATGCCACATGGACTTTGAACACAGAGATGAAGAAAACCCTCTTTTCCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACATGGACTTTGAACACAGAGATGAAGAAAACCCTCTTTTCCCA  737

seq1  ACATACATATGTGCATAATTCCTGTCCAGAAATTATGCCTTTATGGCGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATATGTGCATAATTCCTGTCCAGAAATTATGCCTTTATGGCGGA  787

seq1  AAAAAAAAACATTACCTCTGTCATTCAACATCCTGTTATGCTATGGTTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACATTACCTCTGTCATTCAACATCCTGTTATGCTATGGTTGG  837

seq1  AAAAAGTCTCTTTACATGGTAAAAGAACACAACAAAGCATCTTCAGTACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCTCTTTACATGGTAAAAGAACACAACAAAGCATCTTCAGTACA  887

seq1  ATTCTTTGCTGCTTTAACACCAAAAACATATGGTCAAACTAGACAATGGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGCTGCTTTAACACCAAAAACATATGGTCAAACTAGACAATGGT  937

seq1  GTAAACTCTACAAAGCATGAGACTACAAAACCTCACAATCACTGACATTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTCTACAAAGCATGAGACTACAAAACCTCACAATCACTGACATTT  987

seq1  AAGGCACAAGAGAGAATTC  1016
      |||||||||||||||||||
seq2  AAGGCACAAGAGAGAATTC  1006

seq1: chr1_178529159_178530282
seq2: B6Ng01-112K11.g_69_1179

seq1  GAATTCTTCCCCAACCAATTTGCCTACCTTTAGTTAGGAGGGGGGAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCCAACCAATTTGCCTACCTTTAGTTAGGAGGGGGGAAAAT  50

seq1  GAAAAAAAGAAAAAAAAAGAAAAAACCTACCACCTTCCTTCACACTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAGAAAAAAAAAGAAAAAACCTACCACCTTCCTTCACACTAAGT  100

seq1  TATAGCCTTAATAAGAGACTCTTTCTAAACTACTTTGATTTTGCCTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCTTAATAAGAGACTCTTTCTAAACTACTTTGATTTTGCCTATAA  150

seq1  AATAATTATTCCTTTTTCTGTTCTTAGTGTTGCATCTATATGATCCTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTATTCCTTTTTCTGTTCTTAGTGTTGCATCTATATGATCCTAGC  200

seq1  AGTCTTGCCTCTCAGTTAAACTAACAAGGGTTTCAACTGACTTCTTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGCCTCTCAGTTAAACTAACAAGGGTTTCAACTGACTTCTTATTG  250

seq1  AGATGGTTGGGTACCACATCAAACCCAAACAGGCTACGTGTTGGGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTGGGTACCACATCAAACCCAAACAGGCTACGTGTTGGGGAAAG  300

seq1  GATCCTGCCAGGGTGATGCCTGATTGGCACTTTCTTGTCAAGGACCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGCCAGGGTGATGCCTGATTGGCACTTTCTTGTCAAGGACCCAGT  350

seq1  GCTCCCATGCAGCTGTAAGGGAGTCCCACCCATAGGCCAGAGTCAGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCATGCAGCTGTAAGGGAGTCCCACCCATAGGCCAGAGTCAGCCTC  400

seq1  CTGGTCTACCACAGCCTGGCTTTCAGAGCTCACCACAGCCCTGCCTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACCACAGCCTGGCTTTCAGAGCTCACCACAGCCCTGCCTGGGA  450

seq1  CTAAGCTCAAATACTGACCAGCCAGGACCAGATGCTCCCGACAAGTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTCAAATACTGACCAGCCAGGACCAGATGCTCCCGACAAGTCTGG  500

seq1  TTCTCTTATTTCTCTGAGATGATGCCTTGGGTGGCACTGTGAATGACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTATTTCTCTGAGATGATGCCTTGGGTGGCACTGTGAATGACAAA  550

seq1  GTTTCCTATACAAGATGCCCTGGTCCTGTTGAAGAGCCACCGCCTGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTATACAAGATGCCCTGGTCCTGTTGAAGAGCCACCGCCTGCTTA  600

seq1  GCTGGTGGTCACTGCTCTCAGCAGGTATCCCTGCTCTGGTTTCAGAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGTCACTGCTCTCAGCAGGTATCCCTGCTCTGGTTTCAGAATCA  650

seq1  TTTCTCCCATTTCCAGGGCCCGTGAGCCTGGATGCTAGTACCAATGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCATTTCCAGGGCCCGTGAGCCTGGATGCTAGTACCAATGTCTG  700

seq1  TTTTGTTTTGTTTTGTGCTTGGATTCTCTTGATTGACTATTTGTAATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTGCTTGGATTCTCTTGATTGACTATTTGTAATTCA  750

seq1  -TTTAGCTTCTAGACTATATTTGTCAAAATTTCTCAAGCAATTCCTTCTA  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTTCTAGACTATATTTGTCAAAATTTCTCAAGCAATTCCTTCTA  800

seq1  ATTATATTTCTTGGGAGTCCCCCTCACTATGGAAATCGAGTGCTTAGTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTCTTGGGAGTCCCCCTCACTATGGAAATCGAGTGCTTAGTTA  850

seq1  ACTGACTTTTACTATTGCTTTTAAAAAAAAACAAATAGAAAGTATTCAAG  899
      ||||||||||||||||||||||||||||||   |||||||||||||| ||
seq2  ACTGACTTTTACTATTGCTTTTAAAAAAAA--CAATAGAAAGTATTC-AG  897

seq1  GCATGAATTTAATTCTGTTTGTATCTGTAGTCATGACTATAGGTTTTGAT  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCATGAATTTAATTCTGTTTGTATCTGTAGTCATGACTATA-GTTTTGAT  946

seq1  ATTCTCATTATTTTCTAGACCTCTCAGAAATGAAAC-TACT-CTTGTAGT  997
      | ||||||||||||||||| ||||||| |||||||| |||| ||||||||
seq2  A-TCTCATTATTTTCTAGAACTCTCAG-AATGAAACTTACTCCTTGTAGT  994

seq1  CTAAAAA-TTATTTCT-AGACTACAAATACAAATTACATTTGTGGTAAGG  1045
      ||||||| |||||||| ||||||||||||| ||||||||||   ||||||
seq2  CTAAAAATTTATTTCTAAGACTACAAATAC-AATTACATTTTGTGTAAGG  1043

seq1  CTGTGAATTCTACTTTTGACATTTATTTTTAATTTCAATTCATTTTTTCC  1095
      ||||||| ||||| |||||||||||||||    ||||||||| |||||||
seq2  CTGTGAA-TCTAC-TTTGACATTTATTTT---ATTCAATTCA-TTTTTCC  1087

seq1  AAATTATGTAGACTATACTATTTTTATTG  1124
      ||  ||||| ||||| |||| ||||||||
seq2  AA--TATGT-GACTA-ACTA-TTTTATTG  1111