BAC Information

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BAC

Clone NameB6Ng01-112P24
Chromosome1 (Build37)
Map Location 36,681,741 - 36,762,865
singlet/doubletdoublet
Overlap geneBC050210, Cox5b, Actr1b
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, EG623414
Downstream gene4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112P24.bB6Ng01-112P24.g
ACCDH918910DH918911
length3861,127
definitionDH918910|Mus musculus domesticus DNA, BAC clone: B6Ng01-112P24, 5' end.DH918911|Mus musculus domesticus DNA, BAC clone: B6Ng01-112P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,681,741 - 36,682,107)(36,761,740 - 36,762,865)
sequence
aattcccccctttccactttgggaggcagaggcaggcgtgatttctgagt
tcgaggccagcctggtcaacaaactgagttccaagacagccagggctaca
cagagaaaccctgtcttgaaaaacaaaattcaaggaaataagggtagccc
aggctgggttcatacttgctacgtggccaaggatgaccttgaacttgtga
gccacctactaagcactgagattacactcttttgtgctttgctggggatc
aaacccagggctttgtgtacgtgccacaagcactctgccaactgagcaac
gtctcaacctttctcttgtcttaagaagaaactttatgaacattgtctgg
gaggtgtgaagagctgctaaaagggagggaggaagt
gaattcttcccctgagtagatgtaaacagtggttctttctaaggccccag
tgagaaaccagactaggattccaccagagttcatcctggggaaccagaga
ctttactgacagagcatgggtgagagattagtgtgggatccagggaaacc
cacggcagccttaactctccagtagccttccccagactgtacaccaccac
ttctcaagaccttgagaccatatgcaggtagggtagagctccctgccaat
ggctgggaggtccaatgacccttcccacaacctctcctaagggaacctca
gcagggctgttcaaacggattctggcaagcaggtctagctgacctgagga
aaatggctcctcttttgcttggagtattgcattctataatgctgcacctc
ttcttccagctcttaaaggctttacacacacacacacacacacacacaca
cacacacacacacacacgctcccttcagcagtgttccccgggccttagag
ggggtgacgcgtatctggctattcagcagggtaccaagccctcatcttaa
ccatctctccatgtctatagacttgttgttatccttctcagaaacaagta
agaaaaggggagaaagaggaaacataaagacatccagtggaagctaacag
cagaaagaacctaagggtgtaaacacagatagttggaaggcaccttagcc
aggagcatcacatttgtttaatgaccatggttgtttcctggttagggtct
ataactttccccatccagggagcatttctgtctgagctcacagtagagga
tgaagttcccatctgtggagccggccatgtaagtctaatcagaaagttgg
gttgtacctataacggccaatatctcactaacggccacttcatggtgcag
catgcaagggctgccaccaggtagggctttgggccataattctcccggca
gcttccatagcaccctccagggctgtaaagctaaccagtggcaagggaat
gtctacagcaagctgatcttcatgctggcattcctcggatgaagtccctg
cttcaaaataacctctagcctgttcaagaagataaaagacttgcaagcac
cagggtgcatatcatctgtgcttcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_36681741_36682107
seq2: B6Ng01-112P24.b_19_386

seq1  TTGGGAGGCAGAGGCAGGCG-GATTTCTGAGTTCGAGGCCAGCCTGGTCA  49
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGGGAGGCAGAGGCAGGCGTGATTTCTGAGTTCGAGGCCAGCCTGGTCA  50

seq1  ACAAACTGAGTTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTCTTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGAGTTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTCTTG  100

seq1  AAAAACAAAATTCAAGGAAATAAGGGTAGCCCAGGCTGGGTTCAGACTTG  149
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAAACAAAATTCAAGGAAATAAGGGTAGCCCAGGCTGGGTTCATACTTG  150

seq1  CTACGTGGCCAAGGATGACCTTGAACTTGTGAGCCACCTACTAAGCACTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGTGGCCAAGGATGACCTTGAACTTGTGAGCCACCTACTAAGCACTG  200

seq1  AGATTACACTCTTTTGTGCTTTGCTGGGGATCAAACCCAGGGCTTTGTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACACTCTTTTGTGCTTTGCTGGGGATCAAACCCAGGGCTTTGTGT  250

seq1  ACGTGCCACAAGCACTCTGCCAACTGAGCAACGTCTCAACCTTTCTCTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCCACAAGCACTCTGCCAACTGAGCAACGTCTCAACCTTTCTCTTG  300

seq1  TCATAAGAAGAAACTTTATGAACATTGTCTGGGAGGTGTGAAGAGCTGCT  349
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGAAGAAACTTTATGAACATTGTCTGGGAGGTGTGAAGAGCTGCT  350

seq1  AAAAGGGAGGGAGGAAGT  367
      ||||||||||||||||||
seq2  AAAAGGGAGGGAGGAAGT  368

seq1: chr1_36761740_36762865
seq2: B6Ng01-112P24.g_69_1195 (reverse)

seq1  GGTGGAGCACAGATGATATGCAC---TGTGCTGGCAAGTCTTTTATCTTC  47
      |||| ||||||||||||||||||    ||||| |||||||||||||||||
seq2  GGTGAAGCACAGATGATATGCACCCTGGTGCTTGCAAGTCTTTTATCTTC  50

seq1  TTGAAACAAGCTAGA-GTTATTTGAAAGCAGGGGACCTCAATCGAGGAAA  96
      ||| |||| |||||| |||||||  ||||| ||||| |||  ||||| ||
seq2  TTG-AACAGGCTAGAGGTTATTTTGAAGCA-GGGACTTCATCCGAGG-AA  97

seq1  TGCCAGCATG-AGATCAGCTGGCTGTAAGACATTCCCTTGCCACTGGTTA  145
      |||||||||| ||||||||| ||||| |||||||||||||||||||||||
seq2  TGCCAGCATGAAGATCAGCTTGCTGT-AGACATTCCCTTGCCACTGGTTA  146

seq1  GCTTTTACAGCCCTGGAGGGTGCTATGGAAGCTGCCGGGAGAATTATGGC  195
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-TTTACAGCCCTGGAGGGTGCTATGGAAGCTGCCGGGAGAATTATGGC  195

seq1  CCAAAGCCCTACCTGGTGGCAGCCCTTGCATGCTGCACCATGAAGTGGCC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCCCTACCTGGTGGCAGCCCTTGCATGCTGCACCATGAAGTGGCC  245

seq1  GTTAGTGAGATATTGGCCGTTATAGGTACAA-CCAACTTTCTGATTAGAC  294
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTTAGTGAGATATTGGCCGTTATAGGTACAACCCAACTTTCTGATTAGAC  295

seq1  TTACATGGCCGGCTCCACAGATGGGAACTTCATCCTCTACTGTGAGCTCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGGCCGGCTCCACAGATGGGAACTTCATCCTCTACTGTGAGCTCA  345

seq1  GACAGAAATGCTCCCTGGATGGGGAAAGTTATAGACCCTAACCAGGAAAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAATGCTCCCTGGATGGGGAAAGTTATAGACCCTAACCAGGAAAC  395

seq1  AACCATGGTCATTAAACAAATGTGATGCTCCTGGCTAAGGTGCCTTCCAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGGTCATTAAACAAATGTGATGCTCCTGGCTAAGGTGCCTTCCAA  445

seq1  CTATCTGTGTTTACACCCTTAGGTTCTTTCTGCTGTTAGCTTCCACTGGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTGTTTACACCCTTAGGTTCTTTCTGCTGTTAGCTTCCACTGGA  495

seq1  TGTCTTTATGTTTCCTCTTTCTCCCCTTTTCTTACTTGTTTCTGAGAAGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTATGTTTCCTCTTTCTCCCCTTTTCTTACTTGTTTCTGAGAAGG  545

seq1  ATAACAACAAGTCTATAGACATGGAGAGATGGTTAAGATGAGGGCTTGGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAACAAGTCTATAGACATGGAGAGATGGTTAAGATGAGGGCTTGGT  595

seq1  ACCCTGCTGAATAGCCAGATACGCGTCACCCCCTCTAAGGCCCGGGGAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCTGAATAGCCAGATACGCGTCACCCCCTCTAAGGCCCGGGGAAC  645

seq1  ACTGCTGAAGGGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAAGGGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  695

seq1  TGTGTGTGTAAAGCCTTTAAGAGCTGGAAGAAGAGGTGCAGCATTATAGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTAAAGCCTTTAAGAGCTGGAAGAAGAGGTGCAGCATTATAGA  745

seq1  ATGCAATACTCCAAGCAAAAGAGGAGCCATTTTCCTCAGGTCAGCTAGAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATACTCCAAGCAAAAGAGGAGCCATTTTCCTCAGGTCAGCTAGAC  795

seq1  CTGCTTGCCAGAATCCGTTTGAACAGCCCTGCTGAGGTTCCCTTAGGAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCCAGAATCCGTTTGAACAGCCCTGCTGAGGTTCCCTTAGGAGA  845

seq1  GGTTGTGGGAAGGGTCATTGGACCTCCCAGCCATTGGCAGGGAGCTCTAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGGGAAGGGTCATTGGACCTCCCAGCCATTGGCAGGGAGCTCTAC  895

seq1  CCTACCTGCATATGGTCTCAAGGTCTTGAGAAGTGGTGGTGTACAGTCTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTGCATATGGTCTCAAGGTCTTGAGAAGTGGTGGTGTACAGTCTG  945

seq1  GGGAAGGCTACTGGAGAGTTAAGGCTGCCGTGGGTTTCCCTGGATCCCAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCTACTGGAGAGTTAAGGCTGCCGTGGGTTTCCCTGGATCCCAC  995

seq1  ACTAATCTCTCACCCATGCTCTGTCAGTAAAGTCTCTGGTTCCCCAGGAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCTCTCACCCATGCTCTGTCAGTAAAGTCTCTGGTTCCCCAGGAT  1045

seq1  GAACTCTGGTGGAATCCTAGTCTGGTTTCTCACTGGGGCCTTAGAAAGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTGGTGGAATCCTAGTCTGGTTTCTCACTGGGGCCTTAGAAAGAA  1095

seq1  CCACTGTTTACATCTACTCAGGGGAAGAATTC  1126
      ||||||||||||||||||||||||||||||||
seq2  CCACTGTTTACATCTACTCAGGGGAAGAATTC  1127