BAC Information

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BAC

Clone NameB6Ng01-113J05
Chromosome1 (Build37)
Map Location 71,076,929 - 71,290,406
singlet/doubletdoublet
Overlap geneBard1, LOC667900, Abca12
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809
Downstream geneLOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113J05.bB6Ng01-113J05.g
ACCDH919336DH919337
length1,1201,083
definitionDH919336|Mus musculus domesticus DNA, BAC clone: B6Ng01-113J05, 5' end.DH919337|Mus musculus domesticus DNA, BAC clone: B6Ng01-113J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,076,929 - 71,078,049)(71,289,316 - 71,290,406)
sequence
gaattcctaatctactatcaattgttttattttgcaattcaaagggggaa
gaaatatgaatggttctacctattcataaaaacatgaatgaccagaaata
tcacaatggccgttgttcttacaaaccatgcatgtccaacttaaaatgtt
cacctggtatgacattcagctgtcaagaggaagcaattcaaaggccatta
tacagctgataagccaggtggacggagccatccagactttgccctgccga
accctctctgggtgacagttaaacaggtcttcgtagacgatgtactgcgt
acagaagcgctgatccgactcaggcttggcatggtatgcaaccgtgttga
tggtctgagtcacatcactgtctggcttgggcttgcgactcaggactttg
cctcctgctgcagcaatgagcttaaggaggtcatcccttggatgatgctt
gaagtttccccccaaaaagaagtagcatccatcaaacagctttggcaact
gaaataacaagaaagtaactgttaaaagaagatcaaaatattttcaaaca
ctgtctatgaatgaaggacataagaacaatagtcacgtgtcagaaagagc
caattagaaactgtctttgtcatttctactatagttacatatatcaacag
aataatggaatattgtccattaaaagctgcagtatgtggcaataaagaca
tatggtaactaaatccgagcagcagctgtaagtcttctttcaagctactt
cctgtatctgagatttacctcagattctgaaagctttatgggaatgttca
agatgccaaaaatccattaacagtatgaaattattaccttctggatttta
ctgcgcaccgtgatcatctttcagaatcaagtgcttgaaataagcacaat
taaaatttaatcagtcacctgaactggatgagagggcaaagttttcccga
tgatgattatgacacgaagccctagaacaagcaagtatgtaaaaggaaaa
taccagctgcctctctgttgagcctgctctctgtgggacctcaggaactt
catactttcttcctgctcacgtacctttgctgcccagacagctttcaccc
cttgaacaaaaaaaaggtag
gaattctctcctgacatttctatttaaacatttgatagagcaccagactc
attgatacatgataaagatatcaattcaaatcatatggattacatatatg
tggcaatagctttaaatttagactatgacaaaaatatagtcatattcaca
gaaatgggcattatttttaaagtccagttgaggttgactgtatagaggac
ttctagagaggatatgcctaagcatgtgatcatatcttgatgaaatcttg
ctttcgtaatttgttagagtgtaaatgtatgaaggaagaaaaggagacag
ggaaagaaggagagcaagaggtggcaaagggagaaggaggaagaggcagg
gataatggggataattaaactttatttcttcttttgtaaaccggcactaa
tgtatttcatttccttgaaaaaactcaggttttcatcaactttgccaaag
accaaaaatcctacgaaaatgttgataccagtagccaaggttccaccata
agtgtagactcacaggaagatcaactagattcttagcacctgcagcagat
tcaacttcagcaacaactgacggatgctttctgaagaagacatcgatttt
aaacatctcttccttataaagtgttatactgcacggcaagggtacagcgt
aagactgacaaatgataatggacatccgtgaatgttactgttcccaaaat
gattccctgtattcaacacagtgagcacgcaacgtatatgctggtgatcc
tttagggaaaaggtgaaccacacacctcacgatgaatgtcttaacttatt
actttcaataaaaggacagattaaaaggcatggatgttagtagttgaaag
tagggccagagaagaaaagtaaagtgaacttgggaagacagagttaggtg
atccaacggtgtacttattttctagaaaataacatgaatttagtgtgttg
tatgaagtgctaagctcaataacagaaaacatggagcacactgcacactt
gtctacaaagtatgtgtgtggtttcaggcttgtgaatacttggggattta
gggagcccccatggtgcttatgatacaatatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_71076929_71078049
seq2: B6Ng01-113J05.b_48_1167

seq1  GAATTCCTAATCTACTATCAATTGTTTTATTTTGCAATTCAAAGGGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATCTACTATCAATTGTTTTATTTTGCAATTCAAAGGGGGAA  50

seq1  GAAATATGAATGGTTCTACCTATTCATAAAAACATGAATGACCAGAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGAATGGTTCTACCTATTCATAAAAACATGAATGACCAGAAATA  100

seq1  TCACAATGGCCGTTGTTCTTACAAACCATGCATGTCCAACTTAAAATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGGCCGTTGTTCTTACAAACCATGCATGTCCAACTTAAAATGTT  150

seq1  CACCTGGTATGACATTCAGCTGTCAAGAGGAAGCAATTCAAAGGCCATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGTATGACATTCAGCTGTCAAGAGGAAGCAATTCAAAGGCCATTA  200

seq1  TACAGCTGATAAGCCAGGTGGACGGAGCCATCCAGACTTTGCCCTGCCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTGATAAGCCAGGTGGACGGAGCCATCCAGACTTTGCCCTGCCGA  250

seq1  ACCCTCTCTGGGTGACAGTTAAACAGGTCTTCGTAGACGATGTACTGCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTCTGGGTGACAGTTAAACAGGTCTTCGTAGACGATGTACTGCGT  300

seq1  ACAGAAGCGCTGATCCGACTCAGGCTTGGCATGGTATGCAACCGTGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCGCTGATCCGACTCAGGCTTGGCATGGTATGCAACCGTGTTGA  350

seq1  TGGTCTGAGTCACATCACTGTCTGGCTTGGGCTTGCGACTCAGGACTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGAGTCACATCACTGTCTGGCTTGGGCTTGCGACTCAGGACTTTG  400

seq1  CCTCCTGCTGCAGCAATGAGCTTAAGGAGGTCATCCCTTGGATGATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCTGCAGCAATGAGCTTAAGGAGGTCATCCCTTGGATGATGCTT  450

seq1  GAAGTTTCCCCCCAAAAAGAAGTAGCATCCATCAAACAGCTTTGGCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCCCCCCAAAAAGAAGTAGCATCCATCAAACAGCTTTGGCAACT  500

seq1  GAAATAACAAGAAAGTAACTGTTAAAAGAAGATCAAAATATTTTCAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAACAAGAAAGTAACTGTTAAAAGAAGATCAAAATATTTTCAAACA  550

seq1  CTGTCTATGAATGAAGGACATAAGAACAATAGTCACGTGTCAGAAAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTATGAATGAAGGACATAAGAACAATAGTCACGTGTCAGAAAGAGC  600

seq1  CAATTAGAAACTGTCTTTGTCATTTCTACTATAGTTACATATATCAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGAAACTGTCTTTGTCATTTCTACTATAGTTACATATATCAACAG  650

seq1  AATAATGGAATATTGTCCATT-AAAGCTGCAGTATGTGGCAATAAAGACA  699
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATAATGGAATATTGTCCATTAAAAGCTGCAGTATGTGGCAATAAAGACA  700

seq1  TATGGTAACTAAATCCGAGCAGCAGCTGTAAGTCTTCTTTCAAGCTACTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTAACTAAATCCGAGCAGCAGCTGTAAGTCTTCTTTCAAGCTACTT  750

seq1  CCTGTATCTGAGATTTACCTCAGATTCTGAAAGCTTTATGGGAATGTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATCTGAGATTTACCTCAGATTCTGAAAGCTTTATGGGAATGTTCA  800

seq1  AGATGCCAAAAATCCATTAACAGTATGAAATTATTACCTTCTGGATTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCAAAAATCCATTAACAGTATGAAATTATTACCTTCTGGATTTTA  850

seq1  CTGCGCACCGTGATCATCTTTCAGAATCAAGTGCTTGAAATAAGCACAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCACCGTGATCATCTTTCAGAATCAAGTGCTTGAAATAAGCACAAT  900

seq1  TAAAATTTTAATCAGTCACCTGAACTGGATGAGAGGGCAAAGTTTTCCCG  949
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAA-TTTAATCAGTCACCTGAACTGGATGAGAGGGCAAAGTTTTCCCG  949

seq1  ATGATGATAATGACACGAAGCCCTAAGAACAAGCAAGTATGTAAAAGGAA  999
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  ATGATGATTATGACACGAAGCCCT-AGAACAAGCAAGTATGTAAAAGGAA  998

seq1  AATACCAGCTG-CTCTCTGTTGAGCCTGCTCCTCTGT-GGACCTCCAGGA  1047
      ||||||||||| |||||||||||||||||| |||||| |||||| |||||
seq2  AATACCAGCTGCCTCTCTGTTGAGCCTGCT-CTCTGTGGGACCT-CAGGA  1046

seq1  ACTTCATACTTTTCTTCCTGCTCACGTA-CTTTGCTGTCCAGACAGGCTT  1096
      ||||||||| |||||||||||||||||| |||||||| ||||||| ||||
seq2  ACTTCATAC-TTTCTTCCTGCTCACGTACCTTTGCTGCCCAGACA-GCTT  1094

seq1  TCACCCC-TGACAAAAAATAAGGTAG  1121
      ||||||| |||  ||||| |||||||
seq2  TCACCCCTTGAACAAAAAAAAGGTAG  1120

seq1: chr1_71289316_71290406
seq2: B6Ng01-113J05.g_69_1151 (reverse)

seq1  CTATATTGTTATCATAAGGCACCATGGGGGGCTCACTATATCCCCATGTA  50
      |||||||| |||||||| ||||||| |||||||| ||| ||||||| |||
seq2  CTATATTG-TATCATAA-GCACCAT-GGGGGCTCCCTAAATCCCCAAGTA  47

seq1  TTCACAGGCCCTGAAACCAACACACATACCTTTTGTAGAC-AGTGTGCAG  99
      |||||| | ||||||||| ||||||||||  ||||||||| |||||||||
seq2  TTCACAAG-CCTGAAACC-ACACACATAC--TTTGTAGACAAGTGTGCAG  93

seq1  TGTGCTCCATGTTTTCTGTTAATTGAGCCTTAGCACTTCATACAACACAC  149
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  TGTGCTCCATGTTTTCTGTT-ATTGAG-CTTAGCACTTCATACAACACAC  141

seq1  TAAATTCATGTTATTTTCTAG-AAATAAGTTACACCGTTGGATCACCTAA  198
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  TAAATTCATGTTATTTTCTAGAAAATAAG-TACACCGTTGGATCACCTAA  190

seq1  CTCTGTCTTCCCAAGTTCACCTTACTTTTCTTCTCTGGCCCTACTTTTCA  248
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  CTCTGTCTTCCCAAGTTCACTTTACTTTTCTTCTCTGGCCCTAC-TTTCA  239

seq1  ACTACTAACATCCATGCCTTTTAATCTGTCCTTTTATTGAAAGTAATAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAACATCCATGCCTTTTAATCTGTCCTTTTATTGAAAGTAATAAG  289

seq1  TTAAGACATTCATCGTGAGGTGTGTGGTTCACCTTTTCCCT-AAGGATCA  347
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTAAGACATTCATCGTGAGGTGTGTGGTTCACCTTTTCCCTAAAGGATCA  339

seq1  CCAGCATATACGTTGCGTGCTCACTGTGTTGAATACAGGGAATCATTTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATATACGTTGCGTGCTCACTGTGTTGAATACAGGGAATCATTTTG  389

seq1  GGAACAGTAACATTCACGGATGTCCATTATCATTTGTCAGTCTTACGCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGTAACATTCACGGATGTCCATTATCATTTGTCAGTCTTACGCTG  439

seq1  TACCCTTGCCGTGCAGTATAACACTTTATAAGGAAGAGATGTTTAAAATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTGCCGTGCAGTATAACACTTTATAAGGAAGAGATGTTTAAAATC  489

seq1  GATGTCTTCTTCAGAAAGCATCCGTCAGTTGTTGCTGAAGTTGAATCTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTCTTCAGAAAGCATCCGTCAGTTGTTGCTGAAGTTGAATCTGC  539

seq1  TGCAGGTGCTAAGAATCTAGTTGATCTTCCTGTGAGTCTACACTTATGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTGCTAAGAATCTAGTTGATCTTCCTGTGAGTCTACACTTATGGT  589

seq1  GGAACCTTGGCTACTGGTATCAACATTTTCGTAGGATTTTTGGTCTTTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTTGGCTACTGGTATCAACATTTTCGTAGGATTTTTGGTCTTTGG  639

seq1  CAAAGTTGATGAAAACCTGAGTTTTTTCAAGGAAATGAAATACATTAGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGATGAAAACCTGAGTTTTTTCAAGGAAATGAAATACATTAGTG  689

seq1  CCGGTTTACAAAAGAAGAAATAAAGTTTAATTATCCCCATTATCCCTGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTTTACAAAAGAAGAAATAAAGTTTAATTATCCCCATTATCCCTGCC  739

seq1  TCTTCCTCCTTCTCCCTTTGCCACCTCTTGCTCTCCTTCTTTCCCTGTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCTTCTCCCTTTGCCACCTCTTGCTCTCCTTCTTTCCCTGTCT  789

seq1  CCTTTTCTTCCTTCATACATTTACACTCTAACAAATTACGAAAGCAAGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTTCCTTCATACATTTACACTCTAACAAATTACGAAAGCAAGAT  839

seq1  TTCATCAAGATATGATCACATGCTTAGGCATATCCTCTCTAGAAGTCCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAAGATATGATCACATGCTTAGGCATATCCTCTCTAGAAGTCCTC  889

seq1  TATACAGTCAACCTCAACTGGACTTTAAAAATAATGCCCATTTCTGTGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTCAACCTCAACTGGACTTTAAAAATAATGCCCATTTCTGTGAA  939

seq1  TATGACTATATTTTTGTCATAGTCTAAATTTAAAGCTATTGCCACATATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTATATTTTTGTCATAGTCTAAATTTAAAGCTATTGCCACATATA  989

seq1  TGTAATCCATATGATTTGAATTGATATCTTTATCATGTATCAATGAGTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCCATATGATTTGAATTGATATCTTTATCATGTATCAATGAGTCT  1039

seq1  GGTGCTCTATCAAATGTTTAAATAGAAATGTCAGGAGAGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCTATCAAATGTTTAAATAGAAATGTCAGGAGAGAATTC  1083