BAC Information

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BAC

Clone NameB6Ng01-114A12
Chromosome1 (Build37)
Map Location 40,727,171 - 40,832,660
singlet/doubletdoublet
Overlap geneSlc9a2, Mfsd9
Upstream gene4933400N17Rik, LOC100042065, Map4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4
Downstream geneTmem182, Ppia-ps1_352.1, LOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114A12.bB6Ng01-114A12.g
ACCDH919660DH919661
length1,066287
definitionDH919660|Mus musculus domesticus DNA, BAC clone: B6Ng01-114A12, 5' end.DH919661|Mus musculus domesticus DNA, BAC clone: B6Ng01-114A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,831,571 - 40,832,660)(40,727,171 - 40,727,457)
sequence
gaattcctgtgcgtggacacagcttctctgatgaaggtggtggttgtatt
acttagagaacaaccaactgcatcattagatcccagtcacggcactgttt
ggtttagtgcctcagcctgagcctgtgatgttgggtgtattagggatata
caattagttgcatgtgttcctggttacactggctaaataatagagatctc
tttctcccattttagatatctgggcagtcctgaggcaaggtggagcatac
cagaggggtgggagaaggattcagctaggtgcagagtcctagtcttcccg
gtggtcctcggccaggtagcgagcatgagtgagaagcctctgattttctc
atcctagtgctccatcatgcccttctctctgtgtttctcctggtaagaaa
ttagacttcagtgtctcatagacttaagctcatttcctgccttgctgtat
atccgtgtgagccatgagaacgtctcttctgtcttccgtctgctagtcta
atgtgtgttagcaaagcttgtggcctggctacaggaaccagggagaattt
acacagaagcagttttacccaaatgtcattgtagcccaggttagcctcca
aatttttaagtagctgaaggtgactttggacctcttgcccctgtcctctc
taagcctatttttaggtctgggttttatgagggcagattttttttcactg
ggctttgacttatttacttgtgtatttctggtgtcattagcacattggaa
aagcactctgggaaccgtgtatgctcgcagatggatagatgagtggacag
gtagtaaggtagttagaaagcttgttgagcaactttctcatggatacatt
taatgaccatggatactttagaaggatacgttggtgaatgtagagtgtag
ctaggaagtgcctcacagagcagccagcacacagtgagaatacagtgact
agttcatattgtagtttcatagctttatagagctcagttattgtgggatc
tgagacaaagcgaccacgggatggtggaaagctgtctcacaacagtaaat
ctggtctaaacagata
ctggcacattgagctgttaactcctgagattagcaactgtgtcgcagctc
tctggttgctagaagtgaatttgagtagatatgaatttactctaaagcta
aagcctaaacagccctaactttaaaacccaagtagatccaaatccactct
tggaggactgaaattaaattctgtgtgacaatgtgtatctgtgtgtgttg
tgtttgtgcagtgtatatgtgtgtgaaagaaagtgtgtgtgcatttatgt
gttgtatatgtaaagtatgtgtttgtgagagtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_40831571_40832660
seq2: B6Ng01-114A12.b_47_1112 (reverse)

seq1  TATCTGTGTTTTAGACCAGATTTACTTGGTTGTGTTGAGACCAGCTTTCC  50
      ||||||   |||||||||||||||||  ||||   ||||| ||||||| |
seq2  TATCTG---TTTAGACCAGATTTACT--GTTG---TGAGA-CAGCTTT-C  40

seq1  CACCATTCCCGTGGTTCTGCTGTGGTCTCAGGATCCCAACAATAGACCTT  100
      ||||| |||||||||   ||| | |||||| |||||| |||||| ||  |
seq2  CACCA-TCCCGTGGT--CGCT-TTGTCTCA-GATCCC-ACAATA-AC--T  81

seq1  GAGCTCTATTAAAGCTATTGAAACTAC-ATATGAACTAGTCACTGTATTC  149
      |||||||| |||||||| ||||||||| ||||||||||||||||||||||
seq2  GAGCTCTA-TAAAGCTA-TGAAACTACAATATGAACTAGTCACTGTATTC  129

seq1  TCACTGTGTGCTGGCTGCTCTTGTGGGGCCACTTCCTAGCTACACTCTTA  199
      |||||||||||||||||||| |||| || |||||||||||||||||| ||
seq2  TCACTGTGTGCTGGCTGCTC-TGTGAGG-CACTTCCTAGCTACACTC-TA  176

seq1  CATTCACCAACGTATCCTTCTAAAGTATCCATGGTCATTAAATGTATCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACCAACGTATCCTTCTAAAGTATCCATGGTCATTAAATGTATCCA  226

seq1  TGAGAAAGTTGCTCAACAAGCTTTCTAACTACCTTACTACCTGTCCACTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGTTGCTCAACAAGCTTTCTAACTACCTTACTACCTGTCCACTC  276

seq1  ATCTATCCATCCTGCGAGCATACACGGTTCCCAGAGTGCTTTTCCAATGT  349
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCCAT-CTGCGAGCATACACGGTTCCCAGAGTGCTTTTCCAATGT  325

seq1  GCTAATGACACCAGAAATACACAAGTAAATAAGTCAAAGCCCAGTGAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGACACCAGAAATACACAAGTAAATAAGTCAAAGCCCAGTGAAAA  375

seq1  AAAATCTGCCCTCATAAAACCCAGACCTAAAAATAGGCTTAGAGAGGACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGCCCTCATAAAACCCAGACCTAAAAATAGGCTTAGAGAGGACA  425

seq1  GGGGCAAGAGGTCCAAAGTCACCTTCAGCTACTTAAAAATTTGGAGGCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAGAGGTCCAAAGTCACCTTCAGCTACTTAAAAATTTGGAGGCTA  475

seq1  ACCTGGGCTACAATGACATTTGGGTAAAACTGCTTCTGTGTAAATTCTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGCTACAATGACATTTGGGTAAAACTGCTTCTGTGTAAATTCTCC  525

seq1  CTGGTTCCTGTAGCCAGGCCACAAGCTTTGCTAACACACATTAGACTAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCCTGTAGCCAGGCCACAAGCTTTGCTAACACACATTAGACTAGC  575

seq1  AGACGGAAGACAGAAGAGACGTTCTCATGGCTCACACGGATATACAGCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGAAGACAGAAGAGACGTTCTCATGGCTCACACGGATATACAGCAA  625

seq1  GGCAGGAAATGAGCTTAAGTCTATGAGACACTGAAGTCTAATTTCTTACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAAATGAGCTTAAGTCTATGAGACACTGAAGTCTAATTTCTTACC  675

seq1  AGGAGAAACACAGAGAGAAGGGCATGATGGAGCACTAGGATGAGAAAATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAACACAGAGAGAAGGGCATGATGGAGCACTAGGATGAGAAAATC  725

seq1  AGAGGCTTCTCACTCATGCTCGCTACCTGGCCGAGGACCACCGGGAAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTCTCACTCATGCTCGCTACCTGGCCGAGGACCACCGGGAAGAC  775

seq1  TAGGACTCTGCACCTAGCTGAATCCTTCTCCCACCCCTCTGGTATGCTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTCTGCACCTAGCTGAATCCTTCTCCCACCCCTCTGGTATGCTCC  825

seq1  ACCTTGCCTCAGGACTGCCCAGATATCTAAAATGGGAGAAAGAGATCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCCTCAGGACTGCCCAGATATCTAAAATGGGAGAAAGAGATCTCT  875

seq1  ATTATTTAGCCAGTGTAACCAGGAACACATGCAACTAATTGTATATCCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAGCCAGTGTAACCAGGAACACATGCAACTAATTGTATATCCCT  925

seq1  AATACACCCAACATCACAGGCTCAGGCTGAGGCACTAAACCAAACAGTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACCCAACATCACAGGCTCAGGCTGAGGCACTAAACCAAACAGTGC  975

seq1  CGTGACTGGGATCTAATGATGCAGTTGGTTGTTCTCTAAGTAATACAACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTGGGATCTAATGATGCAGTTGGTTGTTCTCTAAGTAATACAACC  1025

seq1  ACCACCTTCATCAGAGAAGCTGTGTCCACGCACAGGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTTCATCAGAGAAGCTGTGTCCACGCACAGGAATTC  1066

seq1: chr1_40727171_40727457
seq2: B6Ng01-114A12.g_75_361

seq1  CTGGCACATTGAGCTGTTAACTCCTGAGATTAGCAACTGTGTCGCAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACATTGAGCTGTTAACTCCTGAGATTAGCAACTGTGTCGCAGCTC  50

seq1  TCTGGTTGCTAGAAGTGAATTTGAGTAGATATGAATTTACTCTAAAGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTGCTAGAAGTGAATTTGAGTAGATATGAATTTACTCTAAAGCTA  100

seq1  AAGCCTAAACAGCCCTAACTTTAAAACCCAAGTAGATCCAAATCCACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAAACAGCCCTAACTTTAAAACCCAAGTAGATCCAAATCCACTCT  150

seq1  TGGAGGACTGAAATTAAATTCTGTGTGACAATGTGTATCTGTGTGTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGACTGAAATTAAATTCTGTGTGACAATGTGTATCTGTGTGTGTTG  200

seq1  TGTTTGTGCAGTGTATATGTGTGTGAAAGAAAGTGTGTGTGCATTTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGCAGTGTATATGTGTGTGAAAGAAAGTGTGTGTGCATTTATGT  250

seq1  GTTGTATATGTAAAGTATGTGTTTGTGAGAGTGTGTG  287
      |||||||||||||||||||||||||||||||||||||
seq2  GTTGTATATGTAAAGTATGTGTTTGTGAGAGTGTGTG  287