BAC Information

Click to search

BAC

Clone NameB6Ng01-114B19
Chromosome1 (Build37)
Map Location 24,371,757 - 24,555,951
singlet/doubletdoublet
Overlap geneCol19a1
Upstream geneOgfrl1, LOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1
Downstream geneLOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171, Bai3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114B19.bB6Ng01-114B19.g
ACCDH919719DH919720
length863971
definitionDH919719|Mus musculus domesticus DNA, BAC clone: B6Ng01-114B19, 5' end.DH919720|Mus musculus domesticus DNA, BAC clone: B6Ng01-114B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,555,090 - 24,555,951)(24,371,757 - 24,372,729)
sequence
gaattcagtggacgaacggaacagaatagacactgatctgcatgtgggat
ctctccaaagggttctcctttctatcattattcaaaatcatcatatttat
gatcattccttttatgtcttaaagagctgctccccacctccccatgttct
ggcaatcacacagatccagcgtgtgcttggcacacttttgtagcagagag
aaaatggccccccaatgcccagcagacctgccccaaagtggcttctttgt
tgttcctaggagtttcacagctcctaggtgggaagtatttctatcttttt
aaaaaaagccactaagcctttggctgttatcaccaagacctacagctaac
tgagccctgctctttggactgtgttcaacatgtttcttgtttcttcatca
ggaactcactatcctgtgaaaacccaaaccaactctctgttcagataacc
caagctccagacattgcttccacatgaggaagggcagggggaaaggaatt
atgtttatctttttttaaagaaaagaattattcatctttttagttaggta
tcattctattagttttctccctaaggtgttaaaatctcaacctagtggtt
ttcttttataagacacacaggcacttctcatgaaaactcttcagcacttt
ttgtctcactgtggtatatatatatatatatatgtatatatatatatata
tatatttgctaactgctcttaagatcttactcctgcttgaaaactgagtt
aatattaaagaagtacttgtccaaataaataactaatctctaaggtgtat
aagggaaatatttcctgattttacccttttagaatgactggtgtgttttg
ggatacttcctgg
gaattctcagtctgatcccagctgtttcacacgcgtgcctgcttactccg
tggcctcaaggtgacactggaattttagcaatgttgacaacagctgtttt
gtctggaaccatgaccccaataatgcacaagtggcagtaaaaataattca
tggatcatctctctctctctcccccctccctctcctcctccctctctccc
cttgcatactatgtgaatgtgtttttaaattcatggatgtcatcatattt
ttcaatcagagatgaaactgctatcccattggctcaaatagatggttagg
tttattttctttttgatattgtcattagagtgtgtggcctctagtcagtt
ggtacagaggcagagggtcactgatgaaatgaacatttggaagggcattg
atgagttcaaggcttgcaagtgaatcaggttcttattgaaacatcatgag
cctcaaaatgcacacagttatacatatgatattttaatagggaatgatgt
tgcagtgaaatgtcttgtcacctacctcattcagcagcccaagtgtattt
tagggtgtcaggttgctttgagaggtagtcaggctttgtattgcatacag
tggcatcttacttttgctctttgtaacagagcgagagatggagacataca
agagaaggactggaatagactaggggggtcaaatgcagtagttctgagtt
tctgtgatgctttgagggtggtcatttgcctgttatgactgccatctgac
ttaacctgtagcctattagcaggaaaacatcagggttgggaggtagggga
aaaagactgaattatatgtgagaggatttccatcttcaatgaaaaaatgt
actttgtgttcacagcatggttgaaattgagcagtcaacaatcaatcaag
ctttttttcccctccctcttggcaaacaagtctacagtcttgcctaatta
agactaaaaatgatagactaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_24555090_24555951
seq2: B6Ng01-114B19.b_45_907 (reverse)

seq1  CCAGGAAGTATCACAAAACACA-CAGTCATACTAAAAAGGTAAAATCA-G  48
      |||||||||||| ||||||||| ||||||| |||||| |||||||||| |
seq2  CCAGGAAGTATCCCAAAACACACCAGTCATTCTAAAAGGGTAAAATCAGG  50

seq1  AAATATTTCCCTTATACACCTTAGAGATTAGTTATTTATTTTGGACAAGT  98
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAATATTTCCCTTATACACCTTAGAGATTAGTTATTTA-TTTGGACAAGT  99

seq1  ACTTCTTTAATATTAACTCAGTTTTCAAGCAGGAGTAAGATCTTAAGAGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTAATATTAACTCAGTTTTCAAGCAGGAGTAAGATCTTAAGAGC  149

seq1  AGTTAGCAAATATATATATATATATATATACATATATATATATATATATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCAAATATATATATATATATATATACATATATATATATATATATA  199

seq1  CCACAGTGAGACAAAAAGTGCTGAAGAGTTTTCATGAGAAGTGCCTGTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGAGACAAAAAGTGCTGAAGAGTTTTCATGAGAAGTGCCTGTGT  249

seq1  GTCTTATAAAAGAAAACCACTAGGTTGAGATTTTAACACCTTAGGGAGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATAAAAGAAAACCACTAGGTTGAGATTTTAACACCTTAGGGAGAA  299

seq1  AACTAATAGAATGATACCTAACTAAAAAGATGAATAATTCTTTTCTTTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATAGAATGATACCTAACTAAAAAGATGAATAATTCTTTTCTTTAA  349

seq1  AAAAAGATAAACATAATTCCTTTCCCCCTGCCCTTCCTCATGTGGAAGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATAAACATAATTCCTTTCCCCCTGCCCTTCCTCATGTGGAAGCA  399

seq1  ATGTCTGGAGCTTGGGTTATCTGAACAGAGAGTTGGTTTGGGTTTTCACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGGAGCTTGGGTTATCTGAACAGAGAGTTGGTTTGGGTTTTCACA  449

seq1  GGATAGTGAGTTCCTGATGAAGAAACAAGAAACATGTTGAACACAGTCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTGAGTTCCTGATGAAGAAACAAGAAACATGTTGAACACAGTCCA  499

seq1  AAGAGCAGGGCTCAGTTAGCTGTAGGTCTTGGTGATAACAGCCAAAGGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGGGCTCAGTTAGCTGTAGGTCTTGGTGATAACAGCCAAAGGCT  549

seq1  TAGTGGCTTTTTTTAAAAAGATAGAAATACTTCCCACCTAGGAGCTGTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGCTTTTTTTAAAAAGATAGAAATACTTCCCACCTAGGAGCTGTGA  599

seq1  AACTCCTAGGAACAACAAAGAAGCCACTTTGGGGCAGGTCTGCTGGGCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTAGGAACAACAAAGAAGCCACTTTGGGGCAGGTCTGCTGGGCAT  649

seq1  TGGGGGGCCATTTTCTCTCTGCTACAAAAGTGTGCCAAGCACACGCTGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGCCATTTTCTCTCTGCTACAAAAGTGTGCCAAGCACACGCTGGA  699

seq1  TCTGTGTGATTGCCAGAACATGGGGAGGTGGGGAGCAGCTCTTTAAGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGATTGCCAGAACATGGGGAGGTGGGGAGCAGCTCTTTAAGACA  749

seq1  TAAAAGGAATGATCATAAATATGATGATTTTGAATAATGATAGAAAGGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAATGATCATAAATATGATGATTTTGAATAATGATAGAAAGGAG  799

seq1  AACCCTTTGGAGAGATCCCACATGCAGATCAGTGTCTATTCTGTTCCGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTGGAGAGATCCCACATGCAGATCAGTGTCTATTCTGTTCCGTT  849

seq1  CGTCCACTGAATTC  862
      ||||||||||||||
seq2  CGTCCACTGAATTC  863

seq1: chr1_24371757_24372729
seq2: B6Ng01-114B19.g_66_1036

seq1  GAATTCTCAGTCTGATCCCAGCTGTTTCACACGCGTGCCTGCTTACTCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTCTGATCCCAGCTGTTTCACACGCGTGCCTGCTTACTCCG  50

seq1  TGGCCTCAAGGTGACACTGGAATTTTAGCAATGTTGACAACAGCTGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCAAGGTGACACTGGAATTTTAGCAATGTTGACAACAGCTGTTTT  100

seq1  GTCTGGAACCATGACCCCAATAATGCACAAGTGGCAGTAAAAATAATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAACCATGACCCCAATAATGCACAAGTGGCAGTAAAAATAATTCA  150

seq1  TGGATCATCTCTCTCTCTCTCCCCCCTCCCTCTCCTCCTCCCTCTCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCATCTCTCTCTCTCTCCCCCCTCCCTCTCCTCCTCCCTCTCTCCC  200

seq1  CTTGCATACTATGTGAATGTGTTTTTAAATTCATGGATGTCATCATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATACTATGTGAATGTGTTTTTAAATTCATGGATGTCATCATATTT  250

seq1  TTCAATCAGAGATGAAACTGCTATCCCATTGGCTCAAATAGATGGTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCAGAGATGAAACTGCTATCCCATTGGCTCAAATAGATGGTTAGG  300

seq1  TTTATTTTCTTTTTGATATTGTCATTAGAGTGTGTGGCCTCTAGTCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCTTTTTGATATTGTCATTAGAGTGTGTGGCCTCTAGTCAGTT  350

seq1  GGTACAGAGGCAGAGGGTCACTGATGAAATGAACATTTGGAAGGGCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGAGGCAGAGGGTCACTGATGAAATGAACATTTGGAAGGGCATTG  400

seq1  ATGAGTTCAAGGCTTGCAAGTGAATCAGGTTCTTATTGAAACATCATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCAAGGCTTGCAAGTGAATCAGGTTCTTATTGAAACATCATGAG  450

seq1  CCTCAAAATGCACACAGTTATACATATGATATTTTAATAGGGAATGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAATGCACACAGTTATACATATGATATTTTAATAGGGAATGATGT  500

seq1  TGCAGTGAAATGTCTTGTCACCTACCTCATTCAGCAGCCCAAGTGTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGAAATGTCTTGTCACCTACCTCATTCAGCAGCCCAAGTGTATTT  550

seq1  TAGGGTGTCAGGTTGCTTTGAGAGGTAGTCAGGCTTTGTATTGCATACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGTCAGGTTGCTTTGAGAGGTAGTCAGGCTTTGTATTGCATACAG  600

seq1  TGGCATCTTACTTTTGCTCTTTGTAACAGAGCGAGAGATGGAGACATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTTACTTTTGCTCTTTGTAACAGAGCGAGAGATGGAGACATACA  650

seq1  AGAGAAGGACTGGAATAGACTAGGGGGGTCAAATGCAGTAGTTCTGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGACTGGAATAGACTAGGGGGGTCAAATGCAGTAGTTCTGAGTT  700

seq1  TCTGTGATGCTTTGAGGGTGGTCATTTGCCTGTTATGACTGCCATCTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATGCTTTGAGGGTGGTCATTTGCCTGTTATGACTGCCATCTGAC  750

seq1  TTAACCTGTAGCCTATTAGCAGGAAAACATCAGGGTT-GGAGGTAGGGGA  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAACCTGTAGCCTATTAGCAGGAAAACATCAGGGTTGGGAGGTAGGGGA  800

seq1  AAAAGACTGAATTATATGTGAGAGGATTTCCATCTTCAATGAAAAAAATG  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAAGACTGAATTATATGTGAGAGGATTTCCATCTTCAATG-AAAAAATG  849

seq1  TACTTTGTGTTCACAGCATGGTTGAAATTGAGCAGTCAACAATCAATCAA  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TACTTTGTGTTCACAGCATGGTTGAAATTGAGCAGTCAACAATCAATC-A  898

seq1  AGCTTTTTTTCCCCTCCCTCTTGGCAAACAAGTCTACAGTCTTGCCTAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTTTCCCCTCCCTCTTGGCAAACAAGTCTACAGTCTTGCCTAAT  948

seq1  TAAAGACTAAAAATGATAGACTAA  973
      | ||||||||||||||||||||||
seq2  T-AAGACTAAAAATGATAGACTAA  971