BAC Information

Click to search

BAC

Clone NameB6Ng01-114E10
Chromosome1 (Build37)
Map Location 117,360,202 - 117,361,092
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227506
Downstream geneCntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114E10.bB6Ng01-114E10.g
ACCDH919836DH919837
length894601
definitionDH919836|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E10, 5' end.DH919837|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatggtaaaatctatcacagtatcgcctaacactataacatgat
atgattttggggggctcctcttccccaaaacataaaaataataaacagaa
tctaagacaacaaaaaaccaaaaatctcatcatgaaagctgcagtgtgtc
ttttattataattttaagaacactaaggaaataggaggtgcaacaaatct
gtgactggtttagtggctgctcaaacatagcacactcttattactaaaag
ctctgaaatcctgcaaattatagcaacaatcatctagcattacacccaac
ttctaaaagggtagatttttatttttaggttgagctaaattctattgaac
ttttacagaaaaaatggactgtaaagtattcctgtaagcagaacatgaaa
tgattctgaattataggttattgaagattactgtgaccacagtggtacat
ccttcttctaaaatcaggtgttattgaactcactttggtgaagatcattt
ttgaccacgataacaatgattaaatgtattttatgaacattatgctttta
ataatctggtgaatgattgaatataaatgcagcataacaaataaatgctt
cagtagaaacacagctctaaatcgtatgtgcaccatattcagggtgtgag
tacaagggtgtaatggatattgcttattgtgatcttgacaagatctagag
ctgccacaggaattaagcctcttggtatgtctatgcacagacatgggtta
aattgctgagggaaggcacactctaattatggggtatcaccattttcact
ttcttcaatcctaggctaatgaaagggaaaaaacaaggagagaaccatct
ttcacctttcaagttgcttttgtccttgcgtgttcatagtaaaa

gaattcatgagatgctgagaaaaataaattttcttttgagtttgggtgaa
tgattctatagctgtctattaattccatttgtttcataatgtctgttagt
tttgtttttctcagtttagtttaagtcttttcaattggtgacagtggagt
gttgaagtttccctttattgatgtgtggggtgcaatgtgcaagttatgtt
ttagcaatgtttcttttacaaacatggatgcctgggtatttgttgcatag
atgttcataattaacataacatcttgatagatttttcttttgatgagaat
gaagcatgaagtccttccctgtctcttttgattaattttgattgaaaatc
tattttattagaatggcaactccagcttgctttttgggtttttcttgaga
aatatttttctagccctttcctcctaggtaatgtctatatttatgatttc
ttgtatacaacagaatgatggatcctgttttcacatccattctgttagct
tatgtctttttattggggaattaaatccattaaagttgagggctactaat
gaccagtgattgttattttctgtcatttggatggtggtggttgtggtggt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_117360202_117361092
seq2: B6Ng01-114E10.b_37_930 (reverse)

seq1  TTTTACTGTGGAACACGCAGGGAC-AAAGCAACTTGAAAGGTGAATGATG  49
      ||||||| | ||||||||| |||| |||||||||||||||||||| ||||
seq2  TTTTACTAT-GAACACGCAAGGACAAAAGCAACTTGAAAGGTGAAAGATG  49

seq1  GTTCTCTCCTTGTTTTTTCCCTTTCATTTAGCCTAGGATTGAAGTGAGTG  99
      |||||||||||||||||||||||||| |||||||||||||||||  ||||
seq2  GTTCTCTCCTTGTTTTTTCCCTTTCA-TTAGCCTAGGATTGAAGAAAGTG  98

seq1  -AAATGGTGATACCCCATAATTAGAGTGTGCCTTCCCTCAGC-ATTTAAC  147
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAATGGTGATACCCCATAATTAGAGTGTGCCTTCCCTCAGCAATTTAAC  148

seq1  CCATGTCTGCTGCATAGACATACCAAGAGGCTT-ATTCCTGTGGCAGCTC  196
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  CCATGTCTG-TGCATAGACATACCAAGAGGCTTAATTCCTGTGGCAGCTC  197

seq1  TAGATCTTGTCAAGATCACAATAAGCAATATCCATTACACCCTTGTACTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTTGTCAAGATCACAATAAGCAATATCCATTACACCCTTGTACTC  247

seq1  ACACCCTGAATATGGTGCACATACGATTTAGAGCTGTGTTTCTACTG-AG  295
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACACCCTGAATATGGTGCACATACGATTTAGAGCTGTGTTTCTACTGAAG  297

seq1  CATTTATTTGTTATGCTGCATTTATATTCAATCATTCACCAGATTATTAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTGTTATGCTGCATTTATATTCAATCATTCACCAGATTATTAA  347

seq1  AAGCATAATGTTCATAAAATACATTTAATCATTGTTATCGTGGTCAAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAATGTTCATAAAATACATTTAATCATTGTTATCGTGGTCAAAAA  397

seq1  TGATCTTCACCAAAGTGAGTTCAATAACACCTGATTTTAGAAGAAGGATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTCACCAAAGTGAGTTCAATAACACCTGATTTTAGAAGAAGGATG  447

seq1  TACCACTGTGGTCACAGTAATCTTCAATAACCTATAATTCAGAATCATTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGTGGTCACAGTAATCTTCAATAACCTATAATTCAGAATCATTT  497

seq1  CATGTTCTGCTTACAGGAATACTTTACAGTCCATTTTTTCTGTAAAAGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTGCTTACAGGAATACTTTACAGTCCATTTTTTCTGTAAAAGTT  547

seq1  CAATAGAATTTAGCTCAACCTAAAAATAAAAATCTACCCTTTTAGAAGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAATTTAGCTCAACCTAAAAATAAAAATCTACCCTTTTAGAAGTT  597

seq1  GGGTGTAATGCTAGATGATTGTTGCTATAATTTGCAGGATTTCAGAGCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAATGCTAGATGATTGTTGCTATAATTTGCAGGATTTCAGAGCTT  647

seq1  TTAGTAATAAGAGTGTGCTATGTTTGAGCAGCCACTAAACCAGTCACAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAATAAGAGTGTGCTATGTTTGAGCAGCCACTAAACCAGTCACAGA  697

seq1  TTTGTTGCACCTCCTATTTCCTTAGTGTTCTTAAAATTATAATAAAAGAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCACCTCCTATTTCCTTAGTGTTCTTAAAATTATAATAAAAGAC  747

seq1  ACACTGCAGCTTTCATGATGAGATTTTTGGTTTTTTGTTGTCTTAGATTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCAGCTTTCATGATGAGATTTTTGGTTTTTTGTTGTCTTAGATTC  797

seq1  TGTTTATTATTTTTATGTTTTGGGGAAGAGGAGCCCCCCAAAATCATATC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTATTTTTATGTTTTGGGGAAGAGGAGCCCCCCAAAATCATATC  847

seq1  ATGTTATAGTGTTAGGC-ATACTGTGATAGATTTTACCATTGAATTC  891
      ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGTTATAGTGTTAGGCGATACTGTGATAGATTTTACCATTGAATTC  894


| Home | SequenceCutter | Blast | Download |