BAC Information

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BAC

Clone NameB6Ng01-114F14
Chromosome1 (Build37)
Map Location 166,402,680 - 166,497,070
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
Downstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114F14.bB6Ng01-114F14.g
ACCDH919889DH919890
length9391,188
definitionDH919889|Mus musculus domesticus DNA, BAC clone: B6Ng01-114F14, 5' end.DH919890|Mus musculus domesticus DNA, BAC clone: B6Ng01-114F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,402,680 - 166,403,611)(166,495,871 - 166,497,070)
sequence
gaattctcctggtgtcacattgtaaggcttctcagaacgaagtcctgtca
tgattaatgactgaatgaatctgttcccggtagtccccattcccgtcaag
gctcggtccacaaataaagaatataactgaaagccagacaatggtgtcca
acaccttaatcccagcacttgggaagcagaggcaggtagatctctgagtt
tgaggccagcctggtctacagagtgagtcctaggacagccagggctacag
agagaaaccctgtctcaaaaaaccaaaagttataaaatttttaaaaataa
gaaaaaaaaaaccatatataattaaaacaaggccacatgaacttttgttt
ttggctgagatacaatgatgagtggccctaacataagctactttactgat
atactgaaattaacttttgagcccaagctttaaaaaactagacaaacaga
ttctgacgcccacctcttagttattagtggcctgggcaattacttaggct
ttgtttttctctgttaattgctctccacttaatttgaagatagaaagcac
ctagcagtgcctcatatgtaacagccattcatctggtgatagcccctccc
ctaccgttccactcttcctttttcactgaaatattataaaattataattt
catctgtttcaccctattatttcactgaaacgtattaagtatagtgtggc
ttttctttaggggcgacataaaagaaacatctattcaccacagttagggg
tacccagcagttccagacctaaaaaaaaaagattattccacccaagttca
gcttggtggaccagtaatttcttggcattgcttacaagagtatgggcaac
tcaaaggctactgccaaaagccaccaaaaaaataccctacactattttgg
cgtgggcacaaaagctcattgccatggcacaaatttcac
gaattctctcaacaaatggacaaatgaatggtgcccattaagagatgttg
gctaaagaaaacacacagacacatttatgccacacacatccaaacacaca
catatatacgtgcaattgtatatatgagacatgcatacatttgcatgggt
agaactgtatatcatcatggtaaatgaaataatccaaacctaggaagaca
agggttacattttctctcaatatgtggaatttacatttaagtggaggggg
acaggaagaaatttaatgtagtcaagagattcttggattagggaggatat
tgccttagaacccagagcccatgtcaaagaactcagaggcacaaagggct
cttggaagggtggagagaaagaacatgggaataatgaacagagagagtat
atactgagtgccatttttatcaccaagggtgggtgactcttatttataat
tttcttttctctggtctgaatattttaagaggccttttcctatttgagga
ggaatcgtaaacacgcattttctccaagtcaaacatcccagtgattatat
gcttgtgggtagctgctgcacaggcttggagcatgaggaggagcatgaga
tgtggttgtatgacctgcaagcctgaagaactaaggaccctgatcatcca
aggattggtttagcagctgaggcttagtcgtagctcagctgtggctcttt
ttagaaagtaaggtgggcaaaggagaaaaagttctcccaagggtcaaagg
agatgatgtgacacttcaaagggaagctaccggagagccagtgtcaggct
tcccagctgcaatagcccgtccagaccttcaccacatctgcacttctgcc
agcatccacgccctgctccactgcctggaagagcattaccacttcattgg
ctgcagctgaaactttctttcccttcaaaccactccctcagtcacattga
ccgcacagtgacaccagcatctgcgttcttaaattttttccccccacttt
gtaccctgtatctgtgattgtctgtctatctggttgtctgctatggttat
ctcatcatatcaagaggtctacaaacgttttcagagtgctagttgccgtt
tggttttgattttgagttgtctaccaactgaccctcaacctccatacaac
tctgcatccagctcccaggttggaagggccaggtgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166402680_166403611
seq2: B6Ng01-114F14.b_34_972

seq1  GAATTCTCCTGGTGTCACATTGTAAGGCTTCTCAGAACGAAGTCCTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGGTGTCACATTGTAAGGCTTCTCAGAACGAAGTCCTGTCA  50

seq1  TGATTAATGACTGAATGAATCTGTTCCCGGTAGTCCCCATTCCCGTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAATGACTGAATGAATCTGTTCCCGGTAGTCCCCATTCCCGTCAAG  100

seq1  GCTCGGTCCACAAATAAAGAATATAACTGAAAGCCAGACAATGGTGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGTCCACAAATAAAGAATATAACTGAAAGCCAGACAATGGTGTCCA  150

seq1  ACACCTTAATCCCAGCACTTGGGAAGCAGAGGCAGGTAGATCTCTGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTAATCCCAGCACTTGGGAAGCAGAGGCAGGTAGATCTCTGAGTT  200

seq1  TGAGGCCAGCCTGGTCTACAGAGTGAGTCCTAGGACAGCCAGGGCTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCAGCCTGGTCTACAGAGTGAGTCCTAGGACAGCCAGGGCTACAG  250

seq1  AGAGAAACCCTGTCTCAAAAAACCAAAAGTTATAAAATTTTTAAAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTCAAAAAACCAAAAGTTATAAAATTTTTAAAAATAA  300

seq1  GAAAAAAAAAACCATATATAATTAAAACAAGGCCACATGAACTTTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAACCATATATAATTAAAACAAGGCCACATGAACTTTTGTTT  350

seq1  TTGGCTGAGATACAATGATGAGTGGCCCTAACATAAGCTACTTTACTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGAGATACAATGATGAGTGGCCCTAACATAAGCTACTTTACTGAT  400

seq1  ATACTGAAATTAACTTTTGAGCCCAAGCTTTAAAAAACTAGACAAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAAATTAACTTTTGAGCCCAAGCTTTAAAAAACTAGACAAACAGA  450

seq1  TTCTGACGCCCACCTCTTAGTTATTAGTGGCCTGGGCAATTACTTAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACGCCCACCTCTTAGTTATTAGTGGCCTGGGCAATTACTTAGGCT  500

seq1  TTGTTTTTCTCTGTTAATTGCTCTCCACTTAATTTGAAGATAGAAAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCTCTGTTAATTGCTCTCCACTTAATTTGAAGATAGAAAGCAC  550

seq1  CTAGCAGTGCCTCATATGTAACAGCCATTCATCTGGTGATAGCCCCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGTGCCTCATATGTAACAGCCATTCATCTGGTGATAGCCCCTCCC  600

seq1  CTACCGTTCCACTCTTCCTTTTTCACTG-AATATTATAAAATTATAATTT  649
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTACCGTTCCACTCTTCCTTTTTCACTGAAATATTATAAAATTATAATTT  650

seq1  CATCTGTTTCACCCTATTATTTCACTGAAACGTATTAAGTATAGTGTGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTTCACCCTATTATTTCACTGAAACGTATTAAGTATAGTGTGGC  700

seq1  TTTTCTT--AGGGCGACAT-AAAGAAACATCTATTCACCACAGTTA-GGG  745
      |||||||   ||||||||| |||||||||||||||||||||||||| |||
seq2  TTTTCTTTAGGGGCGACATAAAAGAAACATCTATTCACCACAGTTAGGGG  750

seq1  TA-CCAGCAG-TCCAGACC-AAAAAAAAAAGATTATTCCACCCAAGTTCA  792
      || ||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  TACCCAGCAGTTCCAGACCTAAAAAAAAAAGATTATTCCACCCAAGTTCA  800

seq1  GCTTGGTGGACCAGTAGTTTCTTGGCATTGCTTACAAGAGTATGGCCAAC  842
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  GCTTGGTGGACCAGTAATTTCTTGGCATTGCTTACAAGAGTATGGGCAAC  850

seq1  TCAAAGGCCACTGCCAAAAGCCACC-AAAAAACACCCTACACTAGTATGG  891
      |||||||| |||||||||||||||| |||||| ||||||||||| | |||
seq2  TCAAAGGCTACTGCCAAAAGCCACCAAAAAAATACCCTACACTATTTTGG  900

seq1  CCGTGGGTCACAAAAGCTCATTGCCATGGCAACAATTTCAC  932
       |||||| |||||||||||||||||||||||  ||||||||
seq2  -CGTGGG-CACAAAAGCTCATTGCCATGGCACAAATTTCAC  939

seq1: chr1_166495871_166497070
seq2: B6Ng01-114F14.g_68_1255 (reverse)

seq1  ACCCACCTGGTCTCTCAATACTTGAGAGCT-GATGCAGGAGTCGTAT-GA  48
      |||||||||| |  || | || || ||||| |||||| |||| |||| ||
seq2  ACCCACCTGGCCCTTCCA-ACCTGGGAGCTGGATGCA-GAGTTGTATGGA  48

seq1  GTTTGA-GGTCAGTTTGGTACGACACACTTCAAAATCAAAACCAACCGGC  97
      | |||| |||||| |||||| |||| || |||||||||||||||| ||||
seq2  GGTTGAGGGTCAG-TTGGTA-GACA-AC-TCAAAATCAAAACCAAACGGC  94

seq1  AAACTAGCAACTTCTGAAAACGTTTGTAGA-CTCCTGATATGATGAGATA  146
       ||||||||   |||||||||||||||||| ||| |||||||||||||||
seq2  -AACTAGCA--CTCTGAAAACGTTTGTAGACCTCTTGATATGATGAGATA  141

seq1  GACAATAAGCAGACAGACAGATAGACAGACAATCACAGATACAAGGGTTA  196
       || || ||||||||  ||||||||||||||||||||||||||  || ||
seq2  -ACCAT-AGCAGACAACCAGATAGACAGACAATCACAGATACA--GGGTA  187

seq1  CAAAGTGAGGGGGAAAAAATTTAAGAACGCAGATGCTGGTGTCACCTGTG  246
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  CAAAGTG-GGGGGAAAAAATTTAAGAACGCAGATGCTGGTGTCA-CTGTG  235

seq1  CGGTCAATGTGACTGAGGGAGTGGTTTGAAGGGAAAGAAAGTTTCAGCTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCAATGTGACTGAGGGAGTGGTTTGAAGGGAAAGAAAGTTTCAGCTG  285

seq1  CAGCCAATGAAGTGGTAATGCTCTTCCAGGCAGTGGAGCAGGGCGTGGAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAATGAAGTGGTAATGCTCTTCCAGGCAGTGGAGCAGGGCGTGGAT  335

seq1  GCTGGCAGAAGTGCAGATGTGGTGAAGGTCTGGACGGGCTATTGCAGCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAGAAGTGCAGATGTGGTGAAGGTCTGGACGGGCTATTGCAGCTG  385

seq1  GGAAGCCCTGACACTGGCTCTCCGGTAGCTTCCCTTTGAAGTGTCACATC  446
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAG-CCTGACACTGGCTCTCCGGTAGCTTCCCTTTGAAGTGTCACATC  434

seq1  ATCTCCTTTGACCCTTGGGAGAACTTTTTCTCCTTTGCCCACCTTACTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTTTGACCCTTGGGAGAACTTTTTCTCCTTTGCCCACCTTACTTT  484

seq1  CTAAAAAGAGCCACAGCTGAGCTACGACTAAGCCTCAGCTGCTAAACCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAGAGCCACAGCTGAGCTACGACTAAGCCTCAGCTGCTAAACCAA  534

seq1  TCCTTGGATGATCAGGGTCCTTAGTTCTTCAGGCTTGCAGGTCATACAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGATGATCAGGGTCCTTAGTTCTTCAGGCTTGCAGGTCATACAAC  584

seq1  CACATCTCATGCTCCTCCTCATGCTCCAAGCCTGTGCAGCAGCTACCCAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCATGCTCCTCCTCATGCTCCAAGCCTGTGCAGCAGCTACCCAC  634

seq1  AAGCATATAATCACTGGGATGTTTGACTTGGAGAAAATGCGTGTTTACGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATAATCACTGGGATGTTTGACTTGGAGAAAATGCGTGTTTACGA  684

seq1  TTCCTCCTCAAATAGGAAAAGGCCTCTTAAAATATTCAGACCAGAGAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTCAAATAGGAAAAGGCCTCTTAAAATATTCAGACCAGAGAAAA  734

seq1  GAAAATTATAAATAAGAGTCACCCACCCTTGGTGATAAAAATGGCACTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTATAAATAAGAGTCACCCACCCTTGGTGATAAAAATGGCACTCA  784

seq1  GTATATACTCTCTCTGTTCATTATTCCCATGTTCTTTCTCTCCACCCTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATACTCTCTCTGTTCATTATTCCCATGTTCTTTCTCTCCACCCTTC  834

seq1  CAAGAGCCCTTTGTGCCTCTGAGTTCTTTGACATGGGCTCTGGGTTCTAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCCCTTTGTGCCTCTGAGTTCTTTGACATGGGCTCTGGGTTCTAA  884

seq1  GGCAATATCCTCCCTAATCCAAGAATCTCTTGACTACATTAAATTTCTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATATCCTCCCTAATCCAAGAATCTCTTGACTACATTAAATTTCTTC  934

seq1  CTGTCCCCCTCCACTTAAATGTAAATTCCACATATTGAGAGAAAATGTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCCCTCCACTTAAATGTAAATTCCACATATTGAGAGAAAATGTAA  984

seq1  CCCTTGTCTTCCTAGGTTTGGATTATTTCATTTACCATGATGATATACAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTCTTCCTAGGTTTGGATTATTTCATTTACCATGATGATATACAG  1034

seq1  TTCTACCCATGCAAATGTATGCATGTCTCATATATACAATTGCACGTATA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCCATGCAAATGTATGCATGTCTCATATATACAATTGCACGTATA  1084

seq1  TATGTGTGTGTTTGGATGTGTGTGGCATAAATGTGTCTGTGTGTTTTCTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTGTTTGGATGTGTGTGGCATAAATGTGTCTGTGTGTTTTCTT  1134

seq1  TAGCCAACATCTCTTAATGGGCACCATTCATTTGTCCATTTGTTGAGAGA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAACATCTCTTAATGGGCACCATTCATTTGTCCATTTGTTGAGAGA  1184

seq1  ATTC  1200
      ||||
seq2  ATTC  1188