BAC Information

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BAC

Clone NameB6Ng01-114H04
Chromosome1 (Build37)
Map Location 142,860,060 - 142,861,129
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545367, Cfh, Kcnt2
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114H04.bB6Ng01-114H04.g
ACCDH919965DH919966
length1,0721,218
definitionDH919965|Mus musculus domesticus DNA, BAC clone: B6Ng01-114H04, 5' end.DH919966|Mus musculus domesticus DNA, BAC clone: B6Ng01-114H04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaggcccatacctaaacatgataaaatcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttgtcagcatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atagaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccccaaaaattccactagagaacctgataaac
agcttcggtgaagtagctggatataaaataaactcaaacaagtcaatggc
ctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaa
cacccttctcaatagtcacaaataatataaaatatctcggcgtgactcta
actaaggaagtgaaatgaagaataaaaaaattactgaactcttcctcacc
ccagagctcgacccctcccagctagagagtgttcccagaacactcctgaa
ctcttcaccccagaatgcattcctgaactactcatcctagagttcgaacc
ctcccaactaaagactgttccaagaacatttttgagataagggcctcctg
gaacaacctcagaatgaaccgggtacattgccaaataataggacatgact
ccttagttacgtagaatcccttggcagaaccccttgtcccttggcagaac
cccttagttatgtaaacttgtactttccctaccccgctctccccccttga
gttttcctatataagcctgtgaaaaatttggctggtcatcgattctcctc
tacaccactaggtgtatgagtttcgaccccaggagctctggtctatgtgc
tttcatgctgctgctttattaaatcttgccttcaacattttaagttcggt
cctcagtgtcttcttgagtccgcggctgtcccgagagcttgagttgaggt
ctccttcaggggtcttccatttgggggctcgtctgggattcagcgcgaca
ccagaaaaccctagacccactt
gaattcctgctagtcctcttcatggatagtgttatcaagattttctctaa
aagcaccacatatgaaaaacagttttctcaattatcttagacttacataa
gtcaatagagatgcagaatgaagggtttttaacatttagcaccattcact
tattgtggctatcctttcgtgtcttttattctaaatttgcagtactcagt
tacacaaattagttatgattaaagtctgatacaccaagaatctagaaaaa
aataaataggaatgttattgtagggtttcctcttaaaggtgaatagaaat
acaagaagaaatatttgactcccctaagcagaatataacttatgatctac
tatgtgagaatataacagccattgtggaaaacttatcctctttcttgatt
ctgctgcacataaagtttgatattgtaaaagcaacactactggcttttta
ttgcgtcccactcgaccggcaagaaagacgcaacaaaccagaatcttcca
cagcaagagctttattgcttgcttctcaggaagatcacgaaccaggaaaa
tggcctgcttttataacccgcagcatgacgtttcagcacctgatatggcg
tgacagctcctgatttgttgcttgcccatcaccccactattataccccga
gaatgggagtgactaggagtgaattcactcttgcacctgcgtacaaggct
tgtttactagttaggcacagcggaggcccgaaccatcttataatggcgat
tgcccccggcacacacggctctcctcagagattactggcggcacacacgc
gattgcttgcagcacgtactggctctccacatctccccctttttatttta
ttaaaatttgaggctggtctaggcctgtgtaattatgcccatccgctgtg
gctcctgtcttagtcgttcctccaatgtcacagcctttcctgtcataggg
taaccctatcgccaccgggcccctgtctagatgatctgtgcatgagaaag
ttgcccgtcctggataccacagtgctatgtgacatactactaaatgacta
gggcgacctctataaagagccagccaccatgtcattattttgagcataga
ttcagatttcagggagccccttgctcgatggcagcagtgcttgatacaca
actggccagttgtgtccgacctgcacacgagcatgaccagtccagacggt
gcacgcccaaattaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142860060_142861129
seq2: B6Ng01-114H04.b_46_1117

seq1  GAATTCAAGGCCCATACCTAAACATGATAAAATCAATCTACAGCAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCCATACCTAAACATGATAAAATCAATCTACAGCAAACCA  50

seq1  GTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAA  100

seq1  ATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTGTCAGCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTGTCAGCATAG  150

seq1  TACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGG  200

seq1  ATAGAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATAT  250

seq1  GATAGTATATATAAGTGACCCCAAAAATTCCACTAGAGAACCTGATAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTATATATAAGTGACCCCAAAAATTCCACTAGAGAACCTGATAAAC  300

seq1  AGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGC  350

seq1  CTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAA  400

seq1  CACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTA  450

seq1  ACTAAGGAAGTGAAATGAAGAATAAAAAAATTACTGAACTCTTCCTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGAAGTGAAATGAAGAATAAAAAAATTACTGAACTCTTCCTCACC  500

seq1  CCAGAGCTCGACCCCTCCCAGCTAGAGAGTGTTCCCAGAACACTCCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTCGACCCCTCCCAGCTAGAGAGTGTTCCCAGAACACTCCTGAA  550

seq1  CTCTTCACCCCAGAATGCATTCCTGAACTACTCATCCTAGAGTTCGAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACCCCAGAATGCATTCCTGAACTACTCATCCTAGAGTTCGAACC  600

seq1  CTCCCAACTAAAGACTGTTCCAAGAACATTTTTGAGATAAGGGCCTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAACTAAAGACTGTTCCAAGAACATTTTTGAGATAAGGGCCTCCTG  650

seq1  GAACAACCTCAGAATGAACCGGGTACATTGCCAAATAATAGGACATGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACCTCAGAATGAACCGGGTACATTGCCAAATAATAGGACATGACT  700

seq1  CCTTAGTTACGTAGAATCCCTTGGCAGAACCCCTTGTCCCTTGGCAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTTACGTAGAATCCCTTGGCAGAACCCCTTGTCCCTTGGCAGAAC  750

seq1  CCCTTAGTTATGTAAACTTGTACTTTCCCTACCCCGCTCTCCCCCCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGTTATGTAAACTTGTACTTTCCCTACCCCGCTCTCCCCCCTTGA  800

seq1  GTTTTCCTATATAAGCCTGTGAAAAATTTGGCTGGTCATCGATTCTCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTATATAAGCCTGTGAAAAATTTGGCTGGTCATCGATTCTCCTC  850

seq1  TACACCACTAGGTGTATGAGTTTCGACCCCA-GAGCTCTGGTCTATGTGC  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TACACCACTAGGTGTATGAGTTTCGACCCCAGGAGCTCTGGTCTATGTGC  900

seq1  TTTCATGCTGCTGCTTTATTAAATCTTGCCTTCAACATTTTAAGTTCGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCTGCTGCTTTATTAAATCTTGCCTTCAACATTTTAAGTTCGGT  950

seq1  -CTCAGTGTCTTCTTGAGTCCGCGGCTGTCCCGAG-GCTTGAGTGAGGGT  997
       |||||||||||||||||||||||||||||||||| ||||||||   |||
seq2  CCTCAGTGTCTTCTTGAGTCCGCGGCTGTCCCGAGAGCTTGAGTTGAGGT  1000

seq1  CTCCCTTCAGGGGTCTTTCATTTGGGGGCTCGTCTGGGA-TCAGCGCGAC  1046
      || |||||||||||||| ||||||||||||||||||||| ||||||||| 
seq2  CT-CCTTCAGGGGTCTTCCATTTGGGGGCTCGTCTGGGATTCAGCGCGA-  1048

seq1  CACCCAGAGACCCTAGACCCACTT  1070
      ||||   | |||||||||||||||
seq2  CACCAGAAAACCCTAGACCCACTT  1072