BAC Information

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BAC

Clone NameB6Ng01-114I05
Chromosome1 (Build37)
Map Location 106,743,406 - 106,744,076
singlet/doubletsinglet
Overlap geneCdh20
Upstream geneLOC383546, LOC100041134
Downstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114I05.bB6Ng01-114I05.g
ACCDH920015DH920016
length9871,081
definitionDH920015|Mus musculus domesticus DNA, BAC clone: B6Ng01-114I05, 5' end.DH920016|Mus musculus domesticus DNA, BAC clone: B6Ng01-114I05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgggatctagactcaggtcattgtgcttctgtgccaggcaactc
atgaaatctgtttcttcttaatggcataaagtatgactttgtacatttct
tctgaaggtttaatactcactgaactatttctttttattttccatctttg
tgtcactaatcattatatcaacttaatatcctacatggatatatataccg
gaaaagaagaaaggcattacttattttcccagagtaagtggtgtgtcaga
tgctttgcctatatatgtctatttcatgaattgactgatatttctaagct
ttccaatttgacctgtgaatagaaatatctcaaaatatttactttattaa
ttcctttaataaagtaaatacatattacttatatataatatataataagt
gaacaaatcaataagaaataaaaaagtgttgaactaggttgtcactcttt
agtacaaacaggtcttgaacatacggctatgcttctgccttctgcacaag
agaaatatgtcctcgcatttctggtgatccccttcctcttgccaactagc
ttttcactgtttttaatttgcttgtgttttcatgatacagagagctgaat
taggtttgtttgtatgactatgagtgtgagggttatcagaaaatgcatgg
aaagtgtactaagaactatatatctaaaggaaatgtctcagcatctggta
gcaaacattaactcccaatacatcttaaggaggccttgtgagcacctacc
actactctcagaaactattaaagtctttaaatcctcagagagggcctggt
aagctccctctcatccaagatggactgttgactggtccagtctcatgcag
ttttgttgaagttatcagagctggtatgaattcttgagtgcaattgctat
gccatgtctccaatctgacacactcaacattcctcttccagctcttatag
cttttggactttctgttccatgatatgccatgatatt
gaattcttattcgctgttaatagggatgcaaattggtgcagccactctgg
aaatcagtgtggagaattttctgaaaagaaagaaaatttattatatgagc
cagttatacctctccttcatatatgccccaaaaacttgacatcttattcc
atagatatttgctcagcagtgctcatcctggctctcttcacaacaggtag
gaaatgacatcaatctaaatgcacttcaacaaggaaatggataattaaaa
tgtgttacttttacacagtggaattctatttggctgtaaagaaaaatgaa
acctggaagatgagagaatctcaagactcaaaattcatcttagatgaatt
gctcagcaatggtgagagggaacttgtagagtccacctccagtagaaaga
cagggcatcaagtgtgattgcatctcacagtcaaaagctctgacccagaa
ttgttcctgtctaaaagaactacagtgacaaaaatggagaagaaaccgag
gaaaaggggggtccagtgactggcccaaattggaacccatctcaaggaga
agctccaagcctgacactattactgaagctatgatgtacttacagacagg
aggctagcatcactgtcctttaagaggcccaacatgcagctgacgaagac
agaattggacaaaaggtagggacctctgtgattgaattagggaaaggctg
taagaagttgaagcagagggtgacaacatagaaagatcagcagtcttggc
aaacctagacccctgagatctctcagacactgacccacaaaccaggcaga
atatgctagctggtctgagattcctgacacaaatacagcagagtactacc
tggtctggcctcaatgaaagaagatgcaccctaactcttgagagacatga
gaccccaggaaatgggagtcctggtggggtgttggagggtgtggcattgt
ggagacatgcagtttggagtggaacattaattttattaataaaatgggta
taggaaactgaaccgtgatatttcaatgaattagtggatctagaaaatat
attccacatgcgaaaagagaatgcttatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_106743406_106744076
seq2: B6Ng01-114I05.b_47_717 (reverse)

seq1  ATATAGTTCTTAGTACACTTTCCATGCATTTTCTGATAACCCTCACACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTCTTAGTACACTTTCCATGCATTTTCTGATAACCCTCACACTC  50

seq1  ATAGTCATACAAACAAACCTAATTCAGCTCTCTGTATCATGAAAACACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCATACAAACAAACCTAATTCAGCTCTCTGTATCATGAAAACACAA  100

seq1  GCAAATTAAAAACAGTGAAAAGCTAGTTGGCAAGAGGAAGGGGATCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTAAAAACAGTGAAAAGCTAGTTGGCAAGAGGAAGGGGATCACCA  150

seq1  GAAATGCGAGGACATATTTCTCTTGTGCAGAAGGCAGAAGCATAGCCGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCGAGGACATATTTCTCTTGTGCAGAAGGCAGAAGCATAGCCGTA  200

seq1  TGTTCAAGACCTGTTTGTACTAAAGAGTGACAACCTAGTTCAACACTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAGACCTGTTTGTACTAAAGAGTGACAACCTAGTTCAACACTTTT  250

seq1  TTATTTCTTATTGATTTGTTCACTTATTATATATTATATATAAGTAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTATTGATTTGTTCACTTATTATATATTATATATAAGTAATAT  300

seq1  GTATTTACTTTATTAAAGGAATTAATAAAGTAAATATTTTGAGATATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTACTTTATTAAAGGAATTAATAAAGTAAATATTTTGAGATATTTC  350

seq1  TATTCACAGGTCAAATTGGAAAGCTTAGAAATATCAGTCAATTCATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACAGGTCAAATTGGAAAGCTTAGAAATATCAGTCAATTCATGAAA  400

seq1  TAGACATATATAGGCAAAGCATCTGACACACCACTTACTCTGGGAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATATATAGGCAAAGCATCTGACACACCACTTACTCTGGGAAAATA  450

seq1  AGTAATGCCTTTCTTCTTTTCCGGTATATATATCCATGTAGGATATTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGCCTTTCTTCTTTTCCGGTATATATATCCATGTAGGATATTAAG  500

seq1  TTGATATAATGATTAGTGACACAAAGATGGAAAATAAAAAGAAATAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATAATGATTAGTGACACAAAGATGGAAAATAAAAAGAAATAGTTC  550

seq1  AGTGAGTATTAAACCTTCAGAAGAAATGTACAAAGTCATACTTTATGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTATTAAACCTTCAGAAGAAATGTACAAAGTCATACTTTATGCCA  600

seq1  TTAAGAAGAAACAGATTTCATGAGTTGCCTGGCACAGAAGCACAATGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGAAACAGATTTCATGAGTTGCCTGGCACAGAAGCACAATGACC  650

seq1  TGAGTCTAGATCCCAGAATTC  671
      |||||||||||||||||||||
seq2  TGAGTCTAGATCCCAGAATTC  671